Submissions from 2009
Sphingosine-1-phosphate elicits receptor-dependent calcium signaling in retinal amacrine cells, Scott Crousillac, Jeremy Colonna, Emily McMains, Jill Sayes Dewey, and Evanna Gleason
5́-Transducing SVA retrotransposon groups spread efficiently throughout the human genome, Annette Damert, Julija Raiz, Axel V. Horn, Johannes Löwer, Hui Wang, Jinchuan Xing, Mark A. Batzer, Roswitha Löwer, and Gerald G. Schumann
Shedding light on an extremophile lifestyle through transcriptomics, M. Dassanayake, J. S. Haas, H. J. Bohnert, and J. M. Cheeseman
Local conformations and competitive binding affinities of single-and double-stranded primer-template DNA at the polymerization and editing active sites of DNA polymerases, Kausiki Datta, Neil P. Johnson, Vince J. LiCata, and Peter H. von Hippel
Covariance structure in the skull of Catarrhini: a case of pattern stasis and magnitude evolution, Felipe Bandoni de Oliveira, Arthur Porto, and Gabriel Marroig
Patch dynamics of a native grass in relation to the spread of invasive smooth brome (Bromus inermis), Forrest P. Dillemuth, Erick A. Rietschier, and James T. Cronin
Reactivity of nitric oxide with the [4Fe-4S] cluster of dihydroxyacid dehydratase from Escherichia coli, Xuewu Duan, Juanjuan Yang, Binbin Ren, Guoqiang Tan, and Huangen Ding
Environmentally Persistent Free Radicals are Redox Active and More Cytotoxic than the Average Ultrafine Particle, T. R. Dugas, V. Y. Hebert, B. Dellinger, S. Lomnicki, S. A. Cormier, and K. J. Varner
Effects of Tissue Collection Methods on Morphometrics and Survival of Captive Neonatal Northern Bobwhite, Kristine O. Evans, Loren W. Burger, Brant C. Faircloth, William E. Palmer, and John P. Carroll
Nuclear sequences reveal mid-range isolation of an imperilled deep-water coral population, Ron I. Eytan, Marshall Hayes, Patricia Arbour-Reily, Margaret Miller, and Michael E. Hellberg
Copper oxide nanoparticles induce oxidative stress and cytotoxicity in airway epithelial cells, Baher Fahmy and Stephania A. Cormier
Isolation and characterization of microsatellite loci from blue-footed boobies (Sula nebouxii), Brant C. Faircloth, Alejandra Ramos, Hugh Drummond, and Patricia Adair Gowaty
Ten microsatellite loci from Northern Bobwhite (Colinus virginianus), Brant C. Faircloth, Theron M. Terhune, Nancy A. Schable, Travis C. Glenn, William E. Palmer, and John P. Carroll
YY1's DNA-Binding motifs in mammalian olfactory receptor genes, Christopher D. Faulk and Joomyeong Kim
Position-based clustering of microarray expression data, Christopher Faulk and Joomyeong Kim
Variable temperature sensitivity of soil organic carbon in North American forests, Cinzia Fissore, Christian P. Giardina, Christopher W. Swanston, Gary M. King, and Randall K. Kolka
Recent relaxation of purifying selection on the tandem-repetitive early-stage histone H3 gene in brooding sea stars, David W. Foltz and Christopher L. Mah
Inhibition of DNA methyltransferase 1 expression in bovine fibroblast cells used for nuclear transfer, Angelica M. Giraldo, John W. Lynn, Megan N. Purpera, Todd D. Vaught, David L. Ayares, Robert A. Godke, and Kenneth R. Bondioli
Intergeneric conjugal gene transfer from Escherichia coli to the sweet potato pathogen Streptomyces ipomoeae, D. Guan and G. S. Pettis
Island area and species diversity in the southwest Pacific Ocean: Is the lizard fauna of Vanuatu depauperate?, Alison M. Hamilton, Joseph H. Hartman, and Christopher C. Austin
Gene flow and isolation among populations of marine animals, Michael E. Hellberg
Metabolic depression is delayed and mitochondrial impairment averted during prolonged anoxia in the ghost shrimp, Lepidophthalmus louisianensis (Schmitt, 1935), Jeremy D. Holman and Steven C. Hand
The structure of the cornified claw sheath in the domesticated cat (Felis catus): Implications for the claw-shedding mechanism and the evolution of cornified digital end organs, Dominique G. Homberger, Kyungmin Ham, Tolulope Ogunbakin, Jonathan A. Bonin, Brooke A. Hopkins, Michelle L. Osborn, Imtiaz Hossain, Heath A. Barnett, Kenneth L. Matthews, Leslie G. Butler, et al.
DNA methylation analysis of the mammalian PEG3 imprinted domain, Jennifer M. Huang and Joomyeong Kim
Identification of an antisense transcript to ZIM2 in the primate lineage, Jennifer M. Huang, Sungryul Yu, and Joomyeong Kim
Increased gene expression of a facilitated diffusion urea transporter in the skin of the African lungfish (Protopterus annectens) during massively elevated post-terrestrialization urea excretion, Carrie Y.C. Hung, Fernando Galvez, Yuen K. Ip, and Chris M. Wood
Thalidomide suppressed the growth of 4T1 cells into solid tumors in Balb/c mice in a combination therapy with the oncolytic fusogenic HSV-1 OncdSyn, Anna Israyelyan, Edward John Shannon, Abolghasem Baghian, Michael T. Kearney, and Konstantin G. Kousoulas
Complete genome analysis and virulence characteristics of the Louisiana West Nile virus strain LSU-AR01, Arun V. Iyer, Marc J. Boudreaux, Nobuko Wakamatsu, Alma F. Roy, Abolghasem Baghian, Vladimir N. Chouljenko, and Konstantin G. Kousoulas
Recombinant vesicular stomatitis virus-based west Nile vaccine elicits strong humoral and cellular immune responses and protects mice against lethal challenge with the virulent west Nile virus strain LSU-AR01, Arun V. Iyer, Bapi Pahar, Marc J. Boudreaux, Nobuko Wakamatsu, Alma F. Roy, Vladimir N. Chouljenko, Abolghasem Baghian, and Cristian Apetrei
Variations in the composition of gelling agents affect morphophysiological and molecular responses to deficiencies of phosphate and other nutrients 1[c]w[OA], Ajay Jain, Michael D. Poling, Aaron P. Smith, Vinay K. Nagarajan, Brett Lahner, Richard B. Meagher, and Kashchandra G. Raghothama
A functional type I topoisomerase from Pseudomonas aeruginosa, Teesta Jain, Benjamin J. Roper, and Anne Grove
Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription, Nan Jiang, Eldon Emberly, Olivier Cuvier, and Craig M. Hart
Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair, Muthugapatti K. Kandasamy, Elizabeth C. McKinney, Roger B. Deal, Aaron P. Smith, and Richard B. Meagher
Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites, Keunsoo Kang, Jae Hoon Chung, and Joomyeong Kim
High efficiency lipid-based siRNA transfection of adipocytes in suspension, Gail Kilroy, David H. Burk, and Z. Elizabeth Floyd
AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2, Hana Kim, Keunsoo Kang, and Joomyeong Kim
YY1's role in DNA methylation of Peg3 and Xist, Jeong Do Kim, Keunsoo Kang, and Joomyeong Kim
YY1's longer DNA-binding motifs, Jeong do Kim and Joomyeong Kim
YY1 is autoregulated through its own DNA-binding sites, Jeong D. Kim, Sungryul Yu, and Joomyeong Kim
Integrating ELF4 into the circadian system through combined structural and functional studies, Elsebeth Kolmos, Monika Nowak, Maria Werner, Katrin Fischer, Guenter Schwarz, Sarah Mathews, Heiko Schoof, Ferenc Nagy, Janusz M. Bujnicki, and Seth J. Davis
Fifteen polymorphic microsatellite loci from Jamaican streamertail hummingbirds (Trochilus), Stacey L. Lance, Cris Hagen, Travis C. Glenn, Robb T. Brumfield, Katherine Faust Stryjewski, and Gary R. Graves
Morphological Evolution: By Any Means Necessary?, John C. Larkin
Intra- and intersexual functions of singing by male blue Grosbeaks: The role of within-Song Variation, C. Lattin and G. Ritchison
Yeast Elc1 plays an important role in global genomic repair but not in transcription coupled repair, Danielle Lejeune, Xuefeng Chen, Christine Ruggiero, Shannon Berryhill, Baojin Ding, and Shisheng Li
The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and bayesian inference, Alan R. Lemmon, Jeremy M. Brown, Kathrin Stanger-Hall, and Emily Moriarty Lemmon
Cocktail: A Play About the Life and HIV Drug Development Work of Dr. Krisana Kraisintu, Vincent J. LiCata
Research progress on Merremia boisiana, Daijiang Li
Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements, Jing Li, Kyudong Han, Jinchuan Xing, Heui Soo Kim, Jeffrey Rogers, Oliver A. Ryder, Todd Disotell, Bisong Yue, and Mark A. Batzer
Functional complementation of the Arabidopsis thaliana psbo1 mutant phenotype with an N-terminally His6-tagged PsbO-1 protein in photosystem II, Haijun Liu, Laurie K. Frankel, and Terry M. Bricker
Characterization and complementation of a psbR mutant in Arabidopsis thaliana, Haijun Liu, Laurie K. Frankel, and Terry M. Bricker
Rationally designed integrin β3 mutants stabilized in the high affinity conformation, Bing Hao Luo, John Karanicolas, Laura D. Harmacek, David Baker, and Timothy A. Springer
An RIG-I-like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans, Rui Lu, Erbay Yigit, Wan Xiang Li, and Shou Wei Ding
The Evolution of Modularity in the Mammalian Skull II: Evolutionary Consequences, Gabriel Marroig, Leila T. Shirai, Arthur Porto, Felipe B. de Oliveira, and Valderes De Conto
Encoding properties of auditory neurons in the brain of a soniferous damselfish: Response to simple tones and complex conspecific signals, Karen P. Maruska and Timothy C. Tricas
Innate immune responses to Encephalitozoon species infections, Amber Mathews, Anne Hotard, and Hollie Hale-Donze
Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data, Sarah Mathews
A tale of two functions: Enzymatic activity and translational repression by carboxyltransferase, Glen Meades, Brian K. Benson, Anne Grove, and Grover L. Waldrop
Occurrence of mitochondria-targeted late embryogenesis abundant (LEA) gene in animals increases organelle resistance to water stress, Michael A. Menze, Leaf Boswell, Mehmet Toner, and Steven C. Hand
How do animal mitochondria tolerate water stress?, Michael A. Menze and Steven C. Hand
Polyubiquitination of the demethylase Jhd2 controls histone methylation and gene expression, Douglas P. Mersman, Hai Ning Du, Ian M. Fingerman, Paul F. South, and Scott D. Briggs
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008, Mayako Michino, Enrique Abola, Charles L. Brooks, J. Scott Dixon, John Moult, Raymond C. Stevens, Arthur Olson, Wiktor Jurkowski, Arne Elofsson, Slawomir Filipek, et al.
Liquid chromatography-electrospray ionization-mass spectrometric quantitation of juvenile hormone III in whole body extracts of the Formosan subterranean termite., Miyazaki M, Mao L, Henderson G, and Laine RA
Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: Infraorder Furnariides), Robert G. Moyle, R. Terry Chesser, Robb T. Brumfield, Jose G. Tello, Daniel J. Marchese, and Joel Cracraft
Mycobacterium smegmatis histone-like protein Hlp is nucleoid associated: Research Letter, Anirban Mukherjee, Patrick J. DiMario, and Anne Grove
Local immigration, competition from dominant guilds, and the ecological assembly of high-diversity pine savannas, Jonathan A. Myers and Kyle E. Harms
Seed arrival, ecological filters, and plant species richness: a meta-analysis, Jonathan A. Myers and Kyle E. Harms
The 1.85 Å structure of an 8R-lipoxygenase suggests a general model for lipoxygenase product specificity, David B. Neau, Nathaniel C. Gilbert, Sue G. Bartlett, William Boeglin, Alan R. Brash, and Marcia E. Newcomer
Umbrella sampling simulations of biotin carboxylase: is a structure with an open ATP grasp domain stable in solution?, Brian R. Novak, Dorel Moldovan, Grover L. Waldrop, and Marcio S. de Queiroz
Loss of Halophytism by interference with SOS1 expression, Dong Ha Oh, Eduardo Leidi, Quan Zhang, Sung Min Hwang, Youzhi Li, Francisco J. Quintero, Xingyu Jiang, Matilde Paino D'urzo, Sang Yeol Lee, Yanxiu Zhao, et al.
SOS1 and halophytism., Dong Ha Oh, Ali Zahir, Dae Jin Yun, Ray A. Bressan, and Hans J. Bohnert
Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution, John K. Pace, Shurjo K. Sen, Mark A. Batzer, and Cédric Feschotte
Quantifying the effects of seed arrival and environmental conditions on tropical seedling community structure, C E. Paine and Kyle E. Harms
Supplemental irrigation increases seedling performance and diversity in a tropical forest, C. E.Timothy Paine, Kyle E. Harms, and Jess Ramos
The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis, Svetlana Pakhomova, Benlian Gao, William E. Boeglin, Alan R. Brash, and Marcia E. Newcomer
Adipose tissue collagen VI in obesity, Magdalena Pasarica, Barbara Gowronska-Kozak, David Burk, Isabel Remedios, David Hymel, Jeff Gimble, Eric Ravussin, George A. Bray, and Steven R. Smith
Reduced adipose tissue oxygenation in human obesity evidence for rarefaction, macrophage chemotaxis, and inflammation without an angiogenic response, Magdalena Pasarica, Olga R. Sereda, Leanne M. Redman, Diana C. Albarado, David T. Hymel, Laura E. Roan, Jennifer C. Rood, David H. Burk, and Steven R. Smith
The Evolution of Modularity in the Mammalian Skull I: Morphological Integration Patterns and Magnitudes, Arthur Porto, Felipe B. de Oliveira, Leila T. Shirai, Valderes De Conto, and Gabriel Marroig
Evolução da modularidade no crânio de mamíferos, Arthur Guimarães Carvalho Porto
Decomposition in tropical forests: A pan-tropical study of the effects of litter type, litter placement and mesofaunal exclusion across a precipitation gradient, Jennifer S. Powers, Rebecca A. Montgomery, E. Carol Adair, Francis Q. Brearley, Saara J. Dewalt, Camila T. Castanho, Jerome Chave, Erika Deinert, Jörg U. Ganzhorn, Matthew E. Gilbert, et al.
Reading between the LINEs to see into the past, David A. Ray, Roy N. Platt, and Mark A. Batzer
The yeast high mobility group protein HMO2, a subunit of the chromatin-remodeling complex INO80, binds DNA ends, Sreerupa Ray and Anne Grove
Redox control of the DNA damage-inducible protein DinG helicase activity via its iron-sulfur cluster, Binbin Ren, Xuewu Duan, and Huangen Ding
Decoupling development and energy flow during embryonic diapause in the cricket, Allonemobius socius, Julie A. Reynolds and Steven C. Hand
Embryonic diapause highlighted by differential expression of mRNAs for ecdysteroidogenesis, transcription and lipid sparing in the cricket Allonemobius socius, Julie A. Reynolds and Steven C. Hand
High-throughput single cell arrays as a novel tool in biopreservation, Kenneth L. Roach, Kevin R. King, Korkut Uygun, Steven C. Hand, Isaac S. Kohane, Martin L. Yarmush, and Mehmet Toner
Knockdown of the Drosophila GTPase nucleostemin 1 impairs large ribosomal subunit biogenesis, cell growth, and midgut precursor cell maintenance, Raphyel Rosby, Cui Zhengfang, Emily Rogers, Megan A. DeLivron, Victoria L. Robinson, and Patrick J. DiMario
High frequency of the D allele of the angiotensin-converting enzyme gene in Arabic populations, Abdel Halim Salem and Mark A. Batzer
Distribution of four HIV type 1-resistance polymorphisms (CCR5-Δ32, CCR5-m303, CCR2-64I, and SDF1-3′A) in the Bahraini population, Abdel Halim Salem, Eman Farid, Raouf Fadel, Marwan Abu-Hijleh, Wassim Almawi, Kyudong Han, and Mark A. Batzer
Allele frequencies of the human platelet antigen-1 in the Egyptian population, Abdel Halim Salem, Kyudong Han, and Mark A. Batzer
Tetranucleotide microsatellite loci from the black bear (Ursus americanus), JAMIE SKVARLA SANDERLIN, BRANT C. FAIRCLOTH, BRIAN SHAMBLIN, and MICHAEL J. CONROY
An efficient and economic asymmetric synthesis of (+)-nootkatone, tetrahydronootkatone, and derivatives, Anne M. Sauer, William E. Crowe, Gregg Henderson, and Roger A. Laine
Tetranucleotide markers from the loggerhead sea turtle (Caretta caretta) and their cross-amplification in other marine turtle species, Brian M. Shamblin, Brant C. Faircloth, Mark G. Dodd, Dean A. Bagley, Llewellyn M. Ehrhart, Peter H. Dutton, Amy Frey, and Campbell J. Nairn
Effects of phenanthrene- and metal-contaminated sediment on the feeding activity of the Harpacticoid Copepod, Schizopera knabeni, Soraya J. Silva, Kevin R. Carman, John W. Fleeger, Tonya Marshall, and Sidney J. Marlborough
The continuity of protein structure space is an intrinsic property of proteins, Jeffrey Skolnick, Adrian K. Arakaki, Yup Lee Seung, and Michal Brylinski
FINDSITE: A combined evolution/structure-based approach to protein function prediction, Jeffrey Skolnick and Michal Brylinski
Reply to Zimmerman et al.: The space of single domain protein structures is continuous and highly connected, Jeffrey Skolnick, Michal Brylinski, and Seung Yup Lee
Internal priming: An opportunistic pathway for L1 and Alu retrotransposition in hominins, Deepa Srikanta, Shurjo K. Sen, Erin M. Conlin, and Mark A. Batzer
An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair, Deepa Srikanta, Shurjo K. Sen, Charles T. Huang, Erin M. Conlin, Ryan M. Rhodes, and Mark A. Batzer
Flow cytometric and immunohistochemical detection of in vivo BrdU-labeled cells in mouse fat depots, Jaroslaw Staszkiewicz, Jeffrey Gimble, Courtney Cain, Marilyn Dietrich, David Burk, Heather Kirk-Ballard, and Barbara Gawronska-Kozak
IscA/SufA paralogues are required for the [4Fe-4S] cluster assembly in enzymes of multiple physiological pathways in Escherichia coli under aerobic growth conditions, Guoqiang Tan, Jianxin Lu, Jacob P. Bitoun, Hao Huang, and Huangen Ding