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Submissions from 2006

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STAT5 activators modulate acyl CoA oxidase (AOX) expression in adipocytes and STAT5A binds to the AOX promoter in vitro, Ann A. Coulter and Jacqueline M. Stephens

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Stereoselectivity of 8-OH-DPAT toward the serotonin 5-HT1A receptor: Biochemical and molecular modeling study, Joanna Dabrowska and Michal Brylinski

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Temperature dependence and thermodynamics of klenow polymerase binding to primed-template DNA, Kausiki Datta, Andy J. Wowor, Allison J. Richard, and Vince J. LiCata

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Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity, Maria Del Carmen Seleme, Melissa R. Vetter, Richard Cordaux, Laurel Bastone, Mark A. Batzer, and Haig H. Kazazian

Non-additive counteraction of KCl-perturbation of lactate dehydrogenase by trimethylamine N-oxide, Matthew K. Desmond and Joseph F. Siebenaller

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Liana habitat associations and community structure in a Bornean lowland tropical forest, Saara J. DeWalt, Kalan Ickes, Reuben Nilus, Kyle E. Harms, and David F.R.P. Burslem

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Lipid trafficking to the outer membrane of Gram-negative bacteria, William T. Doerrler

An in vivo assay for conjugation-mediated recombination yields novel results for Streptomyces plasmid pIJ101, Matthew J. Ducote and Gregg S. Pettis

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Disturbance-mediated trophic interactions and plant performance, Bret D. Elderd

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Comparing the direct and community-mediated effects of disturbance on plant population dynamics: Flooding, herbivory and Mimulus guttatus, Bret D. Elderd and Dan F. Doak

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Uncertainty in predictions of disease spread and public health responses to bioterrorism and emerging diseases, Bret D. Elderd, Vanja M. Dukic, and Greg Dwyer

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Trehalose uptake through P2X7 purinergic channels provides dehydration protection, Gloria D. Elliott, Xiang Hong Liu, Jennifer L. Cusick, Michael Menze, Jill Vincent, Trudy Witt, Steve Hand, and Mehmet Toner

GMCONVERT: File conversion for GENEMAPPER output files, B.C. Faircloth

Tetranucleotide microsatellite loci from eastern bluebirds Sialia sialis, BRANT C. FAIRCLOTH, GWEN P. KELLER, C. JOSEPH NAIRN, WILLIAM E. PALMER, JOHN P. CARROLL, and PATRICIA ADAIR GOWATY

Stable Isotope Ecology, Brian Fry

The Deinococcus radiodurans-encoded HU protein has two DNA-binding domains, S. Ghosh and A. Grove

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The drosophila boundary element-associated factors BEAF-32A and BEAF-32B affect chromatin structure, Matthew K. Gilbert, Yian Yee Tan, and Craig M. Hart

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Conservation and restoration of the Pinus palustris ecosystem, Frank S. Gilliam and William J. Platt

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Natural disturbances and the physiognomy of pine savannas: A phenomenological model, Frank S. Gilliam, William J. Platt, and Robert K. Peet

Proliferative characteristics and chromosomal stability of bovine donor cells for nuclear transfer, Angelica M. Giraldo, John W. Lynn, Robert A. Godke, and Kenneth R. Bondioli

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Species-habitat associations in a Sri Lankan dipterocarp forest, C. V.S. Gunatilleke, I. A.U.N. Gunatilleke, S. Esufali, K. E. Harms, P. M.S. Ashton, D. F.R.P. Burslem, and P. S. Ashton

Exposure to cadmium-phenanthrene mixtures elicits complex toxic responses in the freshwater tubificid oligochaete, Ilyodrilus templetoni, Kurt A. Gust and John W. Fleeger

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Induction of SOCS-3 is insufficient to confer IRS-1 protein degradation in 3T3-L1 adipocytes, Fang He and Jacqueline M. Stephens

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No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation, Michael E. Hellberg

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Nitric oxide transiently converts synaptic inhibition to excitation in retinal amacrine cells, Brian Hoffpauir, Emily McMains, and Evanna Gleason

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Antagonisms, mutualisms and commensalisms affect outbreak dynamics of the southern pine beetle, Richard W. Hofstetter, James T. Cronin, Kier D. Klepzig, John C. Moser, and Matthew P. Ayres

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An improved cloning strategy for chromatin-immunoprecipitation-derived DNA fragments, Jennifer M. Huang, Jeong Do Kim, Hana Kim, and Joomyeong Kim

Relative importance of hydrocarbon pollutants, salinity and tidal height in colonization of oyster reefs, Yasoma D. Hulathduwa and Kenneth M. Brown

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A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors, Stuart Huntley, Daniel M. Baggott, Aaron T. Hamilton, Mary Tran-Gyamfi, Shan Yang, Joomyeong Kim, Laurie Gordon, Elbert Branscomb, and Lisa Stubbs

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Epinecrophylla, a new genus of antwrens (Aves: Passeriformes: Thamnophilidae), Morton L. Isler, Daniela Rodrigues Lacerda, Phyllis R. Isler, Shannon J. Hackett, Kenneth V. Rosenberg, and Robb T. Brumfield

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Do geese fully develop brood patches? A histological analysis of lesser snow geese (Chen caerulescens caerulescens) and Ross's geese (C. rossii), Jón Einar Jónsson, Alan D. Afton, Dominique G. Homberger, William G. Henk, and Ray T. Alisauskas

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Absence of the PsbQ protein results in destabilization of the PsbV protein and decreased oxygen evolution activity in cyanobacterial photosystem II, Yasuhiro Kashino, Natsuko Inoue-Kashino, Johnna L. Roose, and Himadri B. Pakrasi

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Identification of clustered YY1 binding sites in imprinting control regions, Jeong Do Kim, Angela K. Hinz, Anne Bergmann, Jennifer M. Huang, Ivan Ovcharenko, Lisa Stubbs, and Joomyeong Kim

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Crystal Structure of Dps-1, a Functionally Distinct Dps Protein from Deinococcus radiodurans, Song Gun Kim, Gargi Bhattacharyya, Anne Grove, and Yong Hwan Lee

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Crystal structure of the hypoxia-inducible form of 6-phosphofructo-2- kinase/fructose-2,6-bisphosphatase (PFKFB3): A possible new target for cancer therapy, Song Gun Kim, Nathan P. Manes, M. Raafat El-Maghrabi, and Yong Hwan Lee

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Nitrate-dependent anaerobic carbon monoxide oxidation by aerobic CO-oxidizing bacteria, G. M. King

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A molecular phylogenetic analysis of strombid gastropod morphological diversity, Jared M. Latiolais, Michael S. Taylor, Kaustuv Roy, and Michael E. Hellberg

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Rapid decay of tree-community composition in Amazonian forest fragments, William F. Laurance, Henrique E.M. Nascimento, Susan G. Laurance, Ana Andrade, José E.L.S. Ribeiro, Juan Pablo Giraldo, Thomas E. Lovejoy, Richard Condit, Jerome Chave, Kyle E. Harms, et al.

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Proteomic and genetic approaches to identifying defence-related proteins in rice challenged with the fungal pathogen Rhizoctonia solani, Joohyun Lee, Terry M. Bricker, Michael Lefevre, Shannon R.M. Pinson, and James H. Oard

Modulation of Rad26- and Rpb9-mediated DNA repair by different promoter elements, Shisheng Li, Xuefeng Chen, Christine Ruggiero, Baojin Ding, and Michael J. Smerdon

Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae, Shisheng Li, Baojin Ding, Runqiang Chen, Christine Ruggiero, and Xuefeng Chen

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The shoot-specific expression of γ-glutamylcysteine synthetase directs the long-distance transport of thiol-peptides to roots conferring tolerance to mercury and arsenic, Yujing Li, Om Parkash Dankher, Laura Carreira, Aaron P. Smith, and Richard B. Meagher

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Integrin structures and conformational signaling, Bing Hao Luo and Timothy A. Springer

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Rapid evolution of a recently retroposed transcription factor YY2 in mammalian genomes, Chunqing Luo, Xiaochen Lu, Lisa Stubbs, and Joomyeong Kim

Vetiver oil and nootkatone effects on the growth of pea and citrus, Lixin Mao, Gregg Henderson, Wayne J. Bourgeois, J. Alan Vaughn, and Roger A. Laine

A rapid method for chloroplast isolation from the green alga Chlamydomonas reinhardtii, Catherine B. Mason, Terry M. Bricker, and James V. Moroney

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Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments, Sarah Mathews

Seeing the light, Sarah Mathews

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Testing metabolic ecology theory for allometric scaling of tree size, growth and mortality in tropical forests, Helene C. Muller-Landau, Richard S. Condit, Jerome Chave, Sean C. Thomas, Stephanie A. Bohlman, Sarayudh Bunyavejchewin, Stuart Davies, Robin Foster, Savitri Gunatilleke, Nimal Gunatilleke, et al.

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Comparing tropical forest tree size distributions with the predictions of metabolic ecology and equilibrium models, Helene C. Muller-Landau, Richard S. Condit, Kyle E. Harms, Christian O. Marks, Sean C. Thomas, Sarayudh Bunyavejchewin, George Chuyong, Leonardo Co, Stuart Davies, Robin Foster, et al.

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Aversive parenting in China: Associations with child physical and relational aggression, David A. Nelson, Craig H. Hart, Chongming Yang, Joseph A. Olsen, and Shenghua Jin

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Parenting and peer-group behavior in cultural context, David A. Nelson, Larry J. Nelson, Craig H. Hart, Chongming Yang, and Shenghua Jin

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Relations between Chinese mothers' parenting practices and social withdrawal in early childhood, Larry J. Nelson, Craig H. Hart, Bo Wu, Chongming Yang, Susanne Olsen Roper, and Shenghua Jin

Metschnikowia noctiluminum sp. nov., Metschnikowia corniflorae sp. nov., and Candida chrysomelidarum sp. nov., isolated from green lacewings and beetles, Nhu H. Nguyen, Sung-Oui Suh, Cennet K. Erbil, and Meredith Blackwell

Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov, Nhu H. Nguyen, Sung-Oui Suh, Christopher J. Marshall, and Meredith Blackwell

Evaluation of vetiver grass root growth, oil distribution, and repellency against formosan subterranean termites, K.E. Nix, G. Henderson, B.C.R. Zhu, and R.A. Laine

Erratum: Status, trends and management of sturgeon and paddlefish fisheries (Fish and Fisheries (2005) 6:3 (233-265)), E. K. Pikitch, P. Doukakis, L. Lauck, P. Chakrabarty, and D. L. Erickson

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Sauria SINEs: Novel short interspersed retroposable elements that are widespread in reptile genomes, Oliver Piskurek, Christopher C. Austin, and Norihiro Okada

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Pine savanna overstorey influences on ground-cover biodiversity, William J. Platt, Susan M. Carr, Matthew Reilly, and Jean Fahr

Methods in Microbiology, Volume 35: Extremophiles, Fred A. Rainey

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SINEs of a nearly perfect character, David A. Ray, Jinchuan Xing, Abdel Halim Salem, and Mark A. Batzer

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FGF2 binding, signaling, and angiogenesis are modulated by heparanase in metastatic melanoma cells, Jane Reiland, Doty Kempf, Madhuchhanda Roy, Yvonne Denkins, and Dario Marchetti

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Thermal stability landscape for Klenow DNA polymerase as a function of pH and salt concentration, Allison J. Richard, Chin Chi Liu, Alexandra L. Klinger, Matthew J. Todd, Tara M. Mezzasalma, and Vince J. LiCata

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Reproductive behavior of the Yellow-crowned parrot (Amazona ochrocephala) in Western Panama, Angélica M. Rodríguez Castillo and Jessica R. Eberhard

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Biocatalytic and antimetastatic studies of the marine cembranoids sarcophine and 2-epi-16-deoxysarcophine, Swapnali S. Sawant, Diaa T.A. Youssef, Jane Reiland, Melissa Ferniz, Dario Marchetti, and Khalid A. El Sayed

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Positive selection on nucleotide substitutions and indels in accessory gland proteins of the Drosophila pseudoobscura subgroup, Sheri Dixon Schully and Michael E. Hellberg

Immunolocalization of metabotropic glutamate receptors 1 and 5 in the synaptic layers of the chicken retina, Madhumita Sen and Evanna Gleason

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Human genomic deletions mediated by recombination between Alu elements, Shurjo K. Sen, Kyudong Han, Jianxin Wang, Jungnam Lee, Hui Wang, Pauline A. Callinan, Matthew Dyer, Richard Cordaux, Ping Liang, and Mark A. Batzer

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Characterization of a branchial epithelial calcium channel (ECaC) in freshwater rainbow trout (Oncorhynchus mykiss), A. Shahsavarani, B. McNeill, F. Galvez, C. M. Wood, G. G. Goss, P. P. Hwang, and S. F. Perry

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Phytochrome genes in higher plants: Structure,expression, and evolution, Robert A. Sharrock and Sarah Mathews

Identification of a zinc transporter gene in strawberry, Yanlin Shi and Ding S. Shih

Cloning and expression analysis of two beta-1,3-glucanase genes from strawberry, Yanlin Shi, Yuhua Zhang, and Ding S. Shih

An update on visfatin/pre-B cell colony-enhancing factor, an ubiquitously expressed, illusive cytokine that is regulated in obesity, Jacqueline M. Stephens and Antonio J. Vidal-Puig

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Modulation and lack of cross-talk between signal transducer and activator of transcription 5 and suppressor of cytokine signaling-3 in insulin and growth hormone signaling in 3T3-L1 adipocytes, David J. Story and Jacqueline M. Stephens

Three new asexual arthroconidial yeasts, Geotrichum carabidarum sp. nov., Geotrichum histeridarum sp. nov., and Geotrichum cucujoidarum sp. nov., isolated from the gut of insects, Sung-Oui Suh and Meredith Blackwell

Phylogenetics of Saccharomycetales, the ascomycete yeasts, Sung-Oui Suh, Meredith Blackwell, Cletus P. Kurtzman, and Marc-André Lachance

A yeast clade near Candida kruisii uncovered: nine novel Candida species associated with basidioma-feeding beetles, Sung-Oui Suh, Nhu H. Nguyen, and Meredith Blackwell

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Comparative phylogeography in a genus of coral reef fishes: Biogeographic and genetic concordance in the Caribbean, Michael S. Taylor and Michael E. Hellberg

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Small-scale fuel variation alters fire intensity and shrub abundance in a pine savanna, Jarrod M. Thaxton and William J. Platt

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The Saccharomyces cerevisiae RNA polymerase III recruitment factor subunits Brf1 and Bdp1 impose a strict sequence preference for the downstream half of the TATA box, Nick D. Tsihlis and Anne Grove

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The Prp19 U-box crystal structure suggests a common dimeric architecture for a class of oligomeric E3 ubiquitin ligases, Craig W. Vander Kooi, Melanie D. Ohi, Joshua A. Rosenberg, Michael L. Oldham, Marcia E. Newcomer, Kathleen L. Gould, and Walter J. Chazin

Electrogenerated chemiluminescence of the lithium salts of 8-hydroxyquinoline and 2-methyl-8-hydroxyquinoline, David J. Vinyard and Mark M. Richter

Electrogenerated chemiluminescence of the lithium salts of 8-hydroxyquinoline and 2-methyl-8-hydroxyquinoline, David J. Vinyard and Mark M. Richter

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Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms, Jianxin Wang, Lei Song, M. Katherine Gonder, Sami Azrak, David A. Ray, Mark A. Batzer, Sarah A. Tishkoff, and Ping Liang

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dbRIP: A highly integrated database of retrotransposon insertion polymorphisms in humans, Jianxin Wang, Lei Song, Deepak Grover, Sami Azrak, Mark A. Batzer, and Ping Liang

Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins, S.P. Wilkinson and A. Grove

Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins, Steven P. Wilkinson and Anne Grove

Response [5], Christopher Wills and Kyle Harms

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Nonrandom processes maintain diversity in tropical forests, Christopher Wills, Kyle E. Harms, Richard Condit, David King, Jill Thompson, Fangliang He, Helene C. Muller-Landau, Peter Ashton, Elizabeth Losos, Liza Comita, et al.

Human population genetic structure and diversity inferred from polymorphic L1 (LINE-1) and Alu insertions, David J. Witherspoon, E. E. Marchani, W. S. Watkins, C. T. Ostler, S. P. Wooding, B. A. Anders, J. D. Fowlkes, S. Boissinot, A. V. Furano, D. A. Ray, et al.

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Emergence of primate genes by retrotransposon-mediated sequence transduction, Jinchuan Xing, Hui Wang, Victoria P. Belancio, Richard Cordaux, Prescott L. Deininger, and Mark A. Batzer

A novel slow-tight binding serine protease inhibitor from eastern oyster (Crassostrea virginica) plasma inhibits perkinsin, the major extracellular protease of the oyster protozoan parasite Perkinsus marinus, Qing-Gang Xue, Grover L. Waldrop, Kevin L. Schey, Naoki Itoh, Masahiro Ogawa, Richard K. Cooper, Jack N. Losso, and Jerome F. La Peyre

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The northeastern Black Sea redox zone: Hydrochemical structure and its temporal variability, E. V. Yakushev, V. K. Chasovnikov, E. I. Debolskaya, A. V. Egorov, P. N. Makkaveev, S. V. Pakhomova, O. I. Podymov, and V. G. Yakubenko

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Erratum: "On the stability and interannual variability in the hydrochemical structure of the redox layer of the black sea" (Oceanology (2005) vol. 45 (S61)), E. V. Yakushev, O. I. Podymov, A. V. Egorov, T. P. Demidova, S. V. Pakhomova, V. K. Chasovnikov, and M. V. Chelysheva

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Interplay of IscA and IscU in biogenesis of iron-sulfur clusters, Juanjuan Yang, Jacob P. Bitoun, and Huangen Ding

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The PsbQ protein is required in Arabidopsis for photosystem II assembly/stability and photoautotrophy under low light conditions, Xiaoping Yi, Stefan R. Hargett, Laurie K. Frankel, and Terry M. Bricker

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Exposure of neonates to respiratory syncytial virus is critical in determining subsequent airway response in adults, Dahui You, David Becnel, Kai Wang, Michael Ripple, Melissa Daly, and Stephania A. Cormier

Effects of nutrient enrichment, depuration substrate, and body size on the trophic transfer of cadmium associated with microalgae to the benthic amphipod Leptocheirus plumulosus, Ri-Qing Yu and John W. Fleeger

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Thermalkalibacillus uzonensis gen. nov. sp. nov, a novel aerobic alkali-tolerant thermophilic bacterium isolated from a hot spring in Uzon Caldera, Kamchatka, Weidong Zhao, Carolyn Weber, Chuanlun L. Zhang, Christopher S. Romanek, Gary M. King, Gary Mills, Tatyana Sokolova, and Juergen Wiegel

Submissions from 2005

A mutant of Chlamydomonas reinhardtii that cannot acclimate to low CO 2 conditions has an insertion in the Hdh1 gene, James E. Adams, Sergio L. Colombo, Catherine B. Mason, Ruby A. Ynalvez, Baran Tural, and James V. Moroney