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Submissions from 2004

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Universal primers for the amplification of chloroplast microsatellites in grasses (Poaceae), Jim Provan, Pamela M. Biss, Darragh McMeel, and Sarah Mathews

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Low levels of nucleotide diversity in Crocodylus moreletii and evidence of hybridization with C. acutus, David A. Ray, Jennifer A. Dever, Steven G. Platt, Thomas R. Rainwater, Adam G. Finger, Scott T. McMurry, Mark A. Batzer, Brady Barr, Peter J. Stafford, Jenna McKnight, et al.

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Heparanase degrades syndecan-1 and perlecan heparan sulfate: Functional implications for tumor cell invasion, Jane Reiland, Ralph D. Sanderson, Marian Waguespack, Steven A. Barker, Robert Long, Daniel D. Carson, and Dario Marchetti

Differences in isolated mitochondria are insufficient to account for respiratory depression during diapause in Artemia franciscana embryos, Julie A. Reynolds and Steven C. Hand

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Phosphonoformate: A minimal transition state analogue inhibitor of the fosfomycin resistance protein, FosA, Rachel E. Rigsby, Chris L. Rife, Kerry L. Fillgrove, Marcia E. Newcomer, and Richard N. Armstrong

Differential tolerance among cryptic species: a potential cause of pollutant-related reductions in genetic diversity, Axayácatl Rocha-Olivares, John W. Fleeger, and David W. Foltz

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Evidence that D1 processing is required for manganese binding and extrinsic protein assembly into photosystem II, Johnna L. Roose and Himadri B. Pakrasi

Toxicity and behavioral effects of nootkatone, 1,10-dihydronootkatone, and tetrahydronootkatone to the formosan subterranean termite (Isoptera: Rhinotermitidae)., Ibrahim SA, Henderson G, Zhu BC, Fei H, and Laine RA

Structure, diversity, and evolution of the 45-bp VNTR in intron 5 of the USH1C gene, Sevtap Savas, Ben Frischhertz, Mark A. Batzer, Prescott L. Deininger, and Bronya J. Keats

Tetranucleotide and dinucleotide microsatellite loci from the northern bobwhite (Colinus virginianus), N.A. Schable, B.C. Faircloth, W.E. Palmer, J.P. Carroll, L. Wes Burger, L.A. Brennan, C. Hagen, and T.C. Glenn

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Extreme Free Energy Stabilization of Taq DNA Polymerase, Allyn J. Schoeffler, Allison M. Joubert, Fenggang Peng, Farheen Khan, Chin Chi Liu, and Vince J. LiCata

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High-threshold, Kv3-like potassium currents in magnocellular neurosecretory neurons and their role in spike repolarization, Talent Shevchenko, Ryoichi Teruyama, and William E. Armstrong

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The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MATα cells and exerts a potential tRNA position effect in MATa cells, Tiffany A. Simms, Elsy C. Miller, Nicolas P. Buisson, Nithya Jambunathan, and David Donze

Kinetic characterization of mutations found in propionic acidemia and methylcrotonylglycinuria: evidence for cooperativity in biotin carboxylase, Valerie Sloane and Grover L. Waldrop

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Proteomic analysis of Arabidopsis glutathione S-transferases from benoxacor- and copper-treated seedlings, Aaron P. Smith, Ben P. DeRidder, Woei Jiun Guo, Erin H. Seeley, Fred E. Regnier, and Peter B. Goldsbrough

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Toward a systems approach to understanding plant cell walls, Chris Somerville, Stefan Bauer, Ginger Brininstool, Michelle Facette, Thorsten Hamann, Jennifer Milne, Erin Osborne, Alex Paredez, Staffan Persson, Ted Raab, et al.

Activation of mGluR5 modulates Ca2+ currents in retinal amacrine cells from the chick, Romina Sosa and Evanna Gleason

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STAT 5 activators can replace the requirement of FBS in the adipogenesis of 3T3-L1 cells, William C. Stewart, James E. Baugh, Z. Elizabeth Floyd, and Jacqueline M. Stephens

Three new beetle-associated yeast species in the Pichia guilliermondii clade, Sung-Oui Suh and Meredith Blackwell

Metschnikowia chrysoperlae sp. nov., Candida picachoensis sp. nov. and Candida pimensis sp. nov., isolated from the green lacewings Chrysoperla comanche and Chrysoperla carnea (Neuroptera: Chrysopidae), Sung-Oui Suh, Cara M. Gibson, and Meredith Blackwell

Expansion of the Candida tanzawaensis yeast clade: 16 novel Candida species from basidiocarp-feeding beetles, Sung-Oui Suh, Joseph V. McHugh, and Meredith Blackwell

The status and characterization of Enteroramus dimorphus: a xylose-fermenting yeast attached to the gut of beetles, Sung-Oui Suh, Merlin M. White, Nhu H. Nguyen, and Meredith Blackwell

Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Masashi Tanaka, Ashlee M. Earl, Heather A. Howell, Mie-Jung Park, Jonathan A. Eisen, Scott N. Peterson, and John R. Battista

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Homologs of plant PsbP and PsbQ proteins are necessary for regulation of photosystem II activity in the cyanobacterium Synechocystis 6803 W inside box sign, Leeann E. Thomton, Hiroshi Ohkawa, Johnna L. Roose, Yasuhiro Kashino, Nir Keren, and Himadri B. Pakrasi

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Resolution of mixed human DNA samples using mitochondrial DNA sequence variants, Jerilyn A. Walker, Randall K. Garber, Dale J. Hedges, Gail E. Kilroy, Jinchuan Xing, and Mark A. Batzer

Quantitative PCR for DNA identification based on genome-specific interspersed repetitive elements, Jerilyn A. Walker, David A. Hughes, Dale J. Hedges, Bridget A. Anders, Meredith E. Laborde, Jaiprakash Shewale, Sudhir K. Sinha, and Mark A. Batzer

A new species of Thamnophilus antshrike (Aves : Thamnophilidae) from the Serra do Divisor, Acre, Brazil, BM Whitney, DC Oren, and Brumfield

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HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans, Steven P. Wilkinson and Anne Grove

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Response of a gall-forming guild (Hymenoptera: Cynipidae) to stressed and vigorous prairie roses, Mark A. Williams and James T. Cronin

Comment on "Molecular phylogenies link rates of evolution and speciation" (I), CC Witt and Brumfield

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Comment on "Molecular phylogenies link rates of evolution and speciation" (I)., Christopher C. Witt and Robb T. Brumfield

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Alu element mutation spectra: Molecular clocks and the effect of DNA methylation, Jinchuan Xing, Dale J. Hedges, Kyudong Han, Hui Wang, Richard Cordaux, and Mark A. Batzer

Determination of linkage position and anomeric configuration in Hex-Fuc disaccharides using electrospray ionization tandem mass spectrometry, Jun Xue, Liguo Song, Sirajud D. Khaja, Robert D. Locke, Christopher M. West, Roger A. Laine, and Khushi L. Matta

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Membrane lipid biosynthesis in Chlamydomonas reinhardtii: Expression and characterization of CTP:phosphoethanolamine cytidylyltransferase, Wenyu Yang, Catherine B. Mason, Steve V. Pollock, Tracey Lavezzi, James V. Moroney, and Thomas S. Moore

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Membrane lipid biosynthesis in Chlamydomonas reinhardtii: Ethanolaminephosphotransferase is capable of synthesizing both phosphatidylcholine and phosphatidylethanolamine, Wenyu Yang, James V. Moroney, and Thomas S. Moore

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Four Novel Genes Required for Optimal Photoautotrophic Growth of the Cyanobacterium Synechocystis sp. Strain PCC 6803 Identified by In Vitro Transposon Mutagenesis, Shulu Zhang, Susan M. Laborde, Laurie K. Frankel, and Terry M. Bricker

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FRAGILE FIBER3, an arabidopsis gene encoding a type ii inositol polyphosphate 5-phosphatase, is required for secondary wall synthesis and actin organization in fiber cells, Ruiqin Zhong, David H. Burk, W. Herbert Morrison, and Zheng Hua Ye

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Effects of cardiotrophin on adipocytes, Sanjin Zvonic, Jessica C. Hogan, Patricia Arbour-Reily, Randall L. Mynatt, and Jacqueline M. Stephens

Submissions from 2003

The sesquiterpenoid nootkatone and the absolute configuration of a dibromo derivative., Sauer AM, Fronczek FR, Zhu BC, Crowe WE, Henderson G, and Laine RA

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Human population genetic structure and inference of group membership, Michael J. Bamshad, Stephen Wooding, W. Scott Watkins, Christopher T. Ostler, Mark A. Batzer, and Lynn B. Jorde

Terpene-induced morphological changes to exoskeleton of Formosan subterranean termites (Isoptera: Rhinotermitidae): toxic effects of cis-nerol., Zhu BCR, Henderson G, Fei H, Ying X, and Laine RA

Structure-activity of valencenoid derivatives and their repellence to the Formosan subterranean termite., Zhu BC, Henderson G, Sauer AM, Yu Y, Crowe W, and Laine RA

Toxicity and repellency of patchouli oil and patchouli alcohol against Formosan subterranean termites Coptotermes formosanus Shiraki (Isoptera: Rhinotermitidae)., Zhu BC, Henderson G, Yu Y, and Laine RA

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Predicting severe wildfire years in the Florida Everglades, Brian Beckage and William J. Platt

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Influence of the El Niño Southern Oscillation on fire regimes in the Florida Everglades, Brian Beckage, William J. Platt, Matthew G. Slocum, and Bob Panko

Extreme morphological divergence: phylogenetic position of a termite ectoparasite, Meredith Blackwell, Daniel A. Henk, and Kevin G. Jones

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Methacholine-induced airway hyperresponsiveness is dependent on Gαq signaling, Michael T. Borchers, T. Biechele, J. P. Justice, T. Ansay, S. Cormier, V. Mancino, T. M. Wilkie, M. I. Simon, N. A. Lee, and J. J. Lee

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Carboxylate groups on the manganese-stabilizing protein are required for efficient binding of the 24 kDa extrinsic protein to photosystem II, Terry M. Bricker and Laurie K. Frankel

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An analysis of single clutch paternity in the burrower bug Sehirus cinctus using microsatellites, Jeremy M. Brown, Aneil F. Agrawal, and Edmund D. Brodie

Evolutionary implications of divergent clines in a manakin (Manacus; Aves) hybrid zone (vol 55, pg 2070, 2001), Brumfield, RW Jernigan, DB McDonald, and MJ Braun

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The utility of single nucleotide polymorphisms in inferences of population history, Robb T. Brumfield, Peter Beerli, Deborah A. Nickerson, and Scott V. Edwards

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Comprehensive analysis of Alu-associated diversity on the human sex chromosomes, Pauline A. Callinan, Dale J. Hedges, Abdel Halim Salem, Jinchuan Xing, Jerilyn A. Walker, Randall K. Garber, W. Scott Watkins, Michael J. Bamshad, Lynn B. Jorde, and Mark A. Batzer

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Two RNA binding proteins, HEN4 and HUA1 act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana, Yulan Cheng, Naohiro Kato, Wenming Wang, Junjie Li, and Xuemei Chen

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Identification of three genomic haplotypes 5′ to the human CD1D gene and their distribution in four ethnic groups, Q. Y. Chen, N. Jackson, A. Vargas, S. Chalew, J. Rao, M. Batzer, M. S. Lan, Y. H. Chang, M. Mokhashi, and D. Liu

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Development and Evolution of the Amniote Integument: Current Landscape and Future Horizon, Cheng Ming Chuong and Dominique G. Homberger

Bacillus anthracis virulence in Guinea pigs vaccinated with anthrax vaccine adsorbed is linked to plasmid quantities and clonality, Pamala R. Coker, Kimothy L. Smith, Patricia F. Fellows, Galena Rybachuck, Konstantin G. Kousoulas, and Martin E. Hugh-Jones

c-Myc is required for the glucose-mediated induction of metabolic enzyme genes, James J. Collier, Thuy-Trang T. Doan, Marc C. Daniels, Jill R. Schurr, Jay K. Kolls, and Donald K. Scott

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Normal proliferation and differentiation of Hoxc-8 transgenic chondrocytes in vitro, Stephania A. Cormier, Maria Alice Mello, and Claudia Kappen

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Matrix heterogeneity and host-parasitoid interactions in space, James T. Cronin

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Movement and spatial population structure of a prairie planthopper, James T. Cronin

Immunolocalization of TRPC channel subunits 1 and 4 in the chicken retina, Scott Crousillac, Michelle LeRouge, Michele Rankin, and Evanna Gleason

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Salt dependence of DNA binding by thermus aquaticus and escherichia coli DNA polymerases, Kausiki Datta and Vince J. LiCata

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Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA, Kausiki Datta and Vince J. LiCata

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Common and distinguishing regulatory and expression characteristics of the highly related KorB proteins of Streptomycete plasmids pIJ101 and pSB24.2, Matthew J. Ducote and Gregg S. Pettis

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Mitochondrial mRNA stability and polyadenylation during anoxia-induced quiescence in the brine shrimp Artemia franciscana, Brian D. Eads and Steven C. Hand

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Transcriptional initiation under conditions of anoxia-induced quiescence in mitochondria from Artemia franciscana embryos, Brian D. Eads and Steven C. Hand

The problems and potential of count-based population viability analyses, B. D. Elderd, P. Shahani, and D. F. Doak

The impact of changing flow regimes on riparian vegetation and the riparian species Mimulus guttatus, Bret D. Elderd

Mechanistic Diversity of Fosfomycin Resistance in Pathogenic Microorganisms, Kerry L. Fillgrove, Svetlana Pakhomova, Marcia E. Newcomer, and Richard N. Armstrong

Indirect effects of contaminants in aquatic ecosystems, John W. Fleeger, Kevin R. Carman, and Roger M. Nisbet

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STAT5A promotes adipogenesis in nonprecursor cells and associates with the glucocorticoid receptor during adipocyte differentiation, Z. Elizabeth Floyd and Jacqueline M. Stephens

Invertebrate species with nonpelagic larvae have elevated levels of nonsynonymous substitutions and reduced nucleotide diversities, David W. Foltz

Plasma membrane topology of syncytial domains of herpes simplex virus type 1 glycoprotein K (gK): the UL20 protein enables cell surface localization of gK but not gK-mediated cell-to-cell fusion, Timothy P. Foster, Xavier Alvarez, and Konstantin G. Kousoulas

Overexpression of gK in gK-transformed cells collapses the Golgi apparatus into the endoplasmic reticulum inhibiting virion egress, glycoprotein transport, and virus-induced cell fusion, Timothy P. Foster, Galena V. Rybachuk, Xavier Alvarez, Olga Borkhsenious, and Konstantin G. Kousoulas

Mitochondrial DNA phylogeography of the Bay Wren (Troglodytidae: Thryothorus nigricapillus) complex, Maribel A. González, Jessica R. Eberhard, Irby J. Lovette, Storrs L. Olson, and Eldredge Bermingham

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Surface salt bridges modulate DNA wrapping by the Type II DNA-binding protein TF1, Anne Grove

Lineage-specific expansion of KRAB zinc-finger transcription factor genes: Implications for the evolution of vertebrate regulatory networks, A. T. Hamilton, S. Huntley, J. Kim, E. Branscomb, and L. Stubbs

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Diesel exhaust particles exert acute effects on airway inflammation and function in murine allergen provocation models, Minqi Hao, Stephania Comier, Meiying Wang, James J. Lee, and Andre Nel

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Zymogram with remazol brilliant blue-labeled Micrococcus lysodeikticus cells for the detection of lysozymes: Example of a new lysozyme activity in Formosan termite defense secretions, Markus Hardt, Youzhong Guo, Gregg Henderson, and Roger A. Laine

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Matrix composition affects the spatial ecology of a prairie planthopper, Kyle J. Haynes and James T. Cronin

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Mobile element-based assay for human gender determination, Dale J. Hedges, Jerilyn A. Walker, Pauline A. Callinan, Jaiprakash G. Shewale, Sudhir K. Sinha, and Mark A. Batzer

STAT 1 binds to the LPL promoter in vitro, Jessica C. Hogan and Jacqueline M. Stephens

Avian origins revisited, Dominique G. Homberger

The Role of Mechanical Forces on the Patterning of the Avian Feather-Bearing Skin: A Biomechanical Analysis of the Integumentary Musculature in Birds, Dominique G. Homberger and Kumudini N. De Silva

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Global conformations, hydrodynamics, and x-ray scattering properties of Taq and Escherichia coli DNA polymerases in solution, Allison M. Joubert, Angela S. Byrd, and Vince J. LiCata

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Comparative thermal denaturation of Thermus aquaticus and Escherichia coli type 1 DNA polymerases, Irene Karantzeni, Carmen Ruiz, Chin Chi Liu, and Vince J. Licata

Structural analyses of living plant nuclei., Naohiro Kato

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Chromatin of endoreduplicated pavement cells has greater range of movement than that of diploid guard cells in Arabidopsis thaliana, Naohiro Kato and Eric Lam

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Y chromosome STR haplotypes and the genetic structures of U.S. populations of African, European, and Hispanic ancestry, Manfred Kayser, Silke Brauer, Hiltrud Schädlich, Mechthild Prinz, Mark A. Batzer, Peter A. Zimmerman, B. A. Boatin, and Mark Stoneking

Cloning and partial characterization of a beta-1,3-glucanase gene from strawberry, Anwar A. Khan, Yanlin Shi, and Ding S. Shih

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Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3, Joomyeong Kim, Angela Kollhoff, Anne Bergmann, and Lisa Stubbs

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Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits, Gary M. King

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Molecular and Culture-Based Analyses of Aerobic Carbon Monoxide Oxidizer Diversity, Gary M. King

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Uptake of Carbon Monoxide and Hydrogen at Environmentally Relevant Concentrations by Mycobacteria, Gary M. King

Disturbance history influences regeneration of non-pioneer understory trees, Charles Kwit and William J. Platt

How Do Cells Know What They Want to be When They Grow Up? Lessons from Epidermal Patterning in Arabidopsis, John C. Larkin, Matt L. Brown, and John Schiefelbein

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Tissue-specific structure/function differentiation of the liver isoform of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, Yong Hwan Lee, Yang Li, Kosaku Uyeda, and Charles A. Hasemann

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Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein, Yong Hwan Lee, Shorena Nadaraia, Dan Gu, Donald F. Becker, and John J. Tanner

Photosynthate distribution patterns in cherrybark oak seedling sprouts, Brian Roy Lockhart, John D. Hodges, Emile S. Gardiner, and Andrew W. Ezell

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High affinity ligand binding by integrins does not involve head separation, Bing Hao Luo, Timothy A. Springer, and Junichi Takagi