Submissions from 2005
Tracking Alu evolution in New World primates, David A. Ray and Mark A. Batzer
Chompy: an infestation of MITE-like repetitive elements in the crocodilian genome, David A. Ray, Dale J. Hedges, Scott W. Herke, Justin D. Fowlkes, Erin W. Barnes, Daniel K. LaVie, Lindsey M. Goodwin, Llewellyn D. Densmore, and Mark A. Batzer
Inference of human geographic origins using Alu insertion polymorphisms, David A. Ray, Jerilyn A. Walker, Ashley Hall, Barbara Llewellyn, Jack Ballantyne, Allen T. Christian, Kenneth Turteltaub, and Mark A. Batzer
Alu insertion loci and platyrrhine primate phylogeny, David A. Ray, Jinchuan Xing, Dale J. Hedges, Michael A. Hall, Meredith E. Laborde, Bridget A. Anders, Brittany R. White, Nadica Stoilova, Justin D. Fowlkes, Kate E. Landry, et al.
Antisense-mediated suppression of heparanase gene inhibits melanoma cell invasion, Madhuchhanda Roy, Jane Reiland, Brian P. Murry, Vladimir Chouljenko, Konstantin G. Kousoulas, and Dario Marchetti
Analysis of the human Alu Ye lineage, Abdel Halim Salem, David A. Ray, Dale J. Hedges, Jerzy Jurka, and Mark A. Batzer
Identity by descent and DNA sequence variation of human SINE and LINE elements, A. H. Salem, D. A. Ray, and M. A. Batzer
Academy of Natural Sciences: Job cuts, FH Sheldon, JV Remsen, and Brumfield
Academy of Natural Sciences: job cuts., Frederick H. Sheldon, J. V. Remsen, and Robb T. Brumfield
Meiotic recombination in Drosophila females depends on chromosome continuity between genetically defined boundaries, Dalia Sherizen, Janet K. Jang, Rajal Bhagat, Naohiro Kato, and Kim S. McKim
Glycosylphosphatidylinositol-anchored proteins are required for cell wall synthesis and morphogenesis in arabidopsis, C. Stewart Gillmor, Wolfgang Lukowitz, Ginger Brininstool, John C. Sedbrook, Thorsten Hamann, Patricia Poindexter, and Chris Somerville
Four new yeasts in the Candida mesenterica clade associated with basidiocarp-feeding beetles, Sung-Oui Suh and Meredith Blackwell
The beetle gut: a hyperdiverse source of novel yeasts, Sung-Oui Suh, Joseph V. McHugh, David D. Pollock, and Meredith Blackwell
Nine new Candida species near C. membranifaciens isolated from insects, Sung-Oui Suh, Nhu H. Nguyen, and Meredith Blackwell
A reappraisal of the status of introductory biology laboratory education in U.S. colleges & universities, Marshall D. Sundberg, Joseph E. Armstrong, and E. William Wischusen
Crystal structure of the D94S/G98E variant of rat α-parvalbumin. An explanation for the reduced divalent ion affinity, John J. Tanner, Sayeh Agah, Yong Hwan Lee, and Michael T. Henzl
Marine radiations at small geographic scales: Speciation in neotropical reef gobies (Elacatinus), Michael S. Taylor and Michael E. Hellberg
Enhancement of calcium-dependent afterpotentials in oxytocin neurons of the rat supraoptic nucleus during lactation, Ryoichi Teruyama and William E. Armstrong
A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize, J. Theuri, T. Phelps-Durr, S. Mathews, and J. Birchler
Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils, J. Tolli and G. M. King
Regulation of the expression of photorespiratory genes in Chlamydomonas reinhardtii, Baran Tural and James V. Moroney
Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: Application in human identification, Jerilyn A. Walker, Dale J. Hedges, Benjamin P. Perodeau, Kate E. Landry, Nadica Stoilova, Meredith E. Laborde, Jaiprakash Shewale, Sudhir K. Sinha, and Mark A. Batzer
SVA elements: a hominid-specific retroposon family, Hui Wang, Jinchuan Xing, Deepak Grover, Dale J. Hedges, Kyudong Han, Jerilyn A. Walker, and Mark A. Batzer
Negative cooperativity of uric acid binding to the transcriptional regulator HucR from Deinococcus radiodurans, Steven P. Wilkinson and Anne Grove
A mobile element based phylogeny of Old World monkeys, Jinchuan Xing, Hui Wang, Kyudong Han, David A. Ray, Cheney H. Huang, Leona G. Chemnick, Caro Beth Stewart, Todd R. Disotell, Oliver A. Ryder, and Mark A. Batzer
On the stability and interannual variability in the hydrochemical structure of the redox layer of the Black Sea, E. V. Yakushev, O. I. Podymov, A. V. Egorov, T. P. Demidova, S. V. Pakhomova, V. K. Chasovnikov, and M. V. Chelysheva
The manganese-stabilizing protein is required for photosystem II assembly/stability and photoautotrophy in higher plants, Xiaoping Yi, Myriam McChargue, Susan Laborde, Laurie K. Frankel, and Terry M. Bricker
Mutation of SAC1, an Arabidopsis SAC domain phosphoinositide phosphatase, causes alterations in cell morphogenesis, cell wall synthesis, and actin organization, Ruiqin Zhong, David H. Burk, C. Joseph Nairn, Alicia Wood-Jones, W. Herbert Morrison, and Zheng Hua Ye
Screening method for inhibitors against formosan subterranean termite β-glucosidases in vivo, B.C.R. Zhu, G. Henderson, and R.A. Laine
Screening method for inhibitors against formosan subterranean termite β-glucosidases in vivo, Betty C.R. Zhu, Gregg Henderson, and Roger A. Laine
A ring-like nucleoid is not necessary for radioresistance in the Deinococcaceae, Julie M. Zimmerman and John R. Battista
Cross-talk among gp130 cytokines in adipocytes, Sanjin Zvonic, James E. Baugh, Patricia Arbour-Reily, Randall L. Mynatt, and Jacqueline M. Stephens
Submissions from 2004
Finishing the euchromatic sequence of the human genome, Zahra Abdellah, Alireza Ahmadi, Shahana Ahmed, Matthew Aimable, Rachael Ainscough, Jeff Almeida, Claire Almond, Andrew Ambler, Karen Ambrose, Kerrie Ambrose, et al.
On the social structure of offspring rearing in the burrower bug, Sehirus cinctus (Hemiptera : Cydnidae), AF AGRAWAL, JM BROWN, and ED BRODIE
Impaired coordination of nutrient intake and substrate oxidation in melanocortin-4 receptor knockout mice, Diana C. Albarado, Jennifer McClaine, Jacqueline M. Stephens, Randall L. Mynatt, Jianping Ye, Anthony W. Bannon, William G. Richards, and Andrew A. Butler
Dominant-negative CREB inhibits heparanase functionality and melanoma cell invasion, Rebecca Aucoin, Jane Reiland, Madhuchhanda Roy, and Dario Marchetti
The matrix enhances the effectiveness of corridors and stepping stones, Kristen A. Baum, Kyle J. Haynes, Forrest P. Dillemuth, and James T. Cronin
Crystal Structure of the Ancient, Fe-S Scaffold IscA Reveals a Novel Protein Fold, Patrick W. Bilder, Huangen Ding, and Marcia E. Newcomer
A disorder to order transition accompanies catalysis in retinaldehyde dehydrogenase type II, Tee Bordelon, Sarah K. Montegudo, Svetlana Pakhomova, Michael L. Oldham, and Marcia E. Newcomer
The malic enzyme is required for optimal photoautotrophic growth of Synechocystis sp. strain PCC 6803 under continuous light but not under a diurnal light regimen, Terry M. Bricker, Shulu Zhang, Susan M. Laborde, Paul R. Mayer, Laurie K. Frankel, and James V. Moroney
Birds of the Laguna Kaucaya area, a semi-humid valley in the Andean foothills of departamento Santa Cruz, Bolivia, Brumfield, S Maillard, RC Faucett, G Sanchez, VG Rohwer, JC Catari, CG Schmitt, DC Schmitt, R Strem, and AM Mamani
Limited conformational space for early-stage protein folding simulation, M. Bryliński, W. Jurkowski, L. Konieczny, and I. Roterman
Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life, J. Gordon Burleigh and Sarah Mathews
Genome-wide analysis of the human Alu Yb-lineage., Anthony B. Carter, Abdel Halim Salem, Dale J. Hedges, Catherine Nguyen Keegan, Beth Kimball, Jerilyn A. Walker, W. Scott Watkins, Lynn B. Jorde, and Mark A. Batzer
Cichlid biogeography: Comment and review, Prosanta Chakrabarty
Substrate specificity of Helicobacter pylori histone-like HU protein is determined by insufficient stabilization of DNA flexure points, Christina Chen, Sharmistha Ghosh, and Anne Grove
The relative influence of metal ion binding sites in the I-like domain and the interface with the hybrid domain on rolling and firm adhesion by integrin α4β7, Jian Feng Chen, Junichi Takagi, Can Xie, Tsan Xiao, Bing Hao Luo, and Timothy A. Springer
Sweet changes: glucose homeostasis can be altered by manipulating genes controlling hepatic glucose metabolism, James J. Collier and Donald K. Scott
A long-term study of competition and diversity of corals, Joseph H. Connell, Terence P. Hughes, Carden C. Wallace, Jason E. Tanner, Kyle E. Harms, and Alexander M. Kerr
Retrotransposition of Alu elements: How many sources?, Richard Cordaux, Dale J. Hedges, and Mark A. Batzer
Host-parasitoid extinction and colonization in a fragmented prairie landscape, James T. Cronin
An invasive plant promotes unstable host-parasitoid patch dynamics, James T. Cronin and Kyle J. Haynes
Spider effects on planthopper mortality, dispersal, and spatial population dynamics, James T. Cronin, Kyle J. Haynes, and Forrest Dillemuth
High-latitude tertiary migrations of an exclusively tropical clade: Evidence from Malpighiaceae, Charles C. Davis, Peter W. Fritsch, Charles D. Bell, and Sarah Mathews
Brain metastases in melanoma: Roles of neurotrophins, Yvonne Denkins, Jane Reiland, Madhuchhanda Roy, Neeta Sinnappah-Kang, Jennifer Galjour, Brian P. Murry, Jason Blust, Rebecca Aucoin, and Dario Marchetti
Cell and molecular biology of nucleolar assembly and disassembly, Patrick J. DiMario
Characterization of iron binding in IscA, an ancient iron-sulphur cluster assembly protein, Huangen Ding and Robert J. Clark
IscA mediates iron delivery for assembly of iron-sulfur clusters in IscU under the limited accessible free iron conditions, Huangen Ding, Robert J. Clark, and Baojin Ding
RNA silencing: A conserved antiviral immunity of plants and animals, Shou Wei Ding, Hongwei Li, Rui Lu, Feng Li, and Wan Xiang Li
MsbA-dependent translocation of lipids across the inner membrane of Escherichia coli, William T. Doerrler, Henry S. Gibbons, R. Christian, and H. Raetz
Breaking the histone code of silence: The propagation and blocking of heterochromatin, David Donze
Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits, Kari E. Dunfield and Gary M. King
Phylogeny and biogeography of the Amazona ochrocephala (Aves: Psittacidae) complex, Jessica R. Eberhard and Eldredge Bermingham
Control of peroxisome proliferator-activated receptor γ2 stability and activity by SUMOylation, Z. Elizabeth Floyd and Jacqueline M. Stephens
Apparent selection intensity for the cytochrome oxidase subunit I gene varies with mode of reproduction in echinoderms, David W. Foltz, Adam W. Hrincevich, and Axayácatl Rocha-Olivares
Apparent selection intensity for the cytochrome oxidase subunit I gene varies with mode of reproduction in echinoderms, David W. Foltz, Adam W. Hrincevich, and Axayácatl Rocha-Olivares
The herpes simplex virus type 1 UL20 protein modulates membrane fusion events during cytoplasmic virion morphogenesis and virus-induced cell fusion, Timothy P. Foster, Jeffrey M. Melancon, Joel D. Baines, and Konstantin G. Kousoulas
Herpes simplex virus type 1 glycoprotein K and the UL20 protein are interdependent for intracellular trafficking and trans-Golgi network localization, Timothy P. Foster, Jeffrey M. Melancon, Trisha L. Olivier, and Konstantin G. Kousoulas
Population genetic structure of the prairie skink (Eumeces septentrionalis): Nested clade analysis of post Pleistocene populations, Gregory S. Fuerst and Christopher C. Austin
Histone-like Protein HU from Deinococcus radiodurans Binds Preferentially to Four-way DNA Junctions, Sharmistha Ghosh and Anne Grove
Stabilization, not polymerization, of microtubules inhibits the nuclear translocation of STATs in adipocytes, Evanna L. Gleason, Jessica C. Hogan, and Jacqueline M. Stephens
Sml1p is a dimer in solution: Characterization of denaturation and renaturation of recombinant Sml1p, Vibha Gupta, Cynthia B. Peterson, Lezlee T. Dice, Tomoaki Uchiki, Joseph Racca, Jun Tao Guo, Ying-Xu, Robert Hettich, Xiaolan Zhao, Rodney Rothstein, et al.
Mutation of active site residues in the chitin-binding domain ChBD ChiA1 from chitinase A1 of Bacillus circulans alters substrate specificity: Use of a green fluorescent protein binding assay, Markus Hardt and Roger A. Laine
Variation in small sapling density, understory cover, and resource availability in four neotropical forests, Kyle E. Harms, Jennifer S. Powers, and Rebecca A. Montgomery
The relationship between social and severity of language impairment, Kerstine I. Hart, Martin Fujiki, Bonnie Brinton, and Craig H. Hart
Seawater acclimation causes independent alterations in Na +/TK+- And H+-ATPase activity in isolated mitochondria-rich cell subtypes of the rainbow trout gill, Guy S. Hawkings, Fernando Galvez, and Greg G. Goss
Confounding of patch quality and matrix effects in herbivore movement studies, Kyle J. Haynes and James T. Cronin
Differential Alu mobilization and polymorphism among the human and chimpanzee lineages, Dale J. Hedges, Pauline A. Callinan, Richard Cordaux, Jinchuan Xing, Erin Barnes, and Mark A. Batzer
Assignment of the four disulfides in the N-terminal somatomedin B domain of native vitronectin isolated from human plasma, Nancy A. Horn, Gregory B. Hurst, Anand Mayasundari, Neil A. Whittemore, Engin H. Serpersu, and Cynthia B. Peterson
Toxic and repellent effects of 2′-acetonaphthone on Coptotermes formosanus (Isoptera: Rhinotermitidae), S.A. Ibrahim, G. Henderson, H. Fei, and R.A. Laine
Survivorship, tunneling and feeding behaviors of Coptotermes formosanus (Isoptera: Rhinotermitidae) in response to 2′-acetonaphthone-treated sand, Sanaa A. Ibrahim, Gregg Henderson, Huixin Fei, and Roger A. Laine
Toxicity and behavioral effects of nootkatone, 1,10-dihydronootkatone, and tetrahydronootkatone to the formosan subterranean termite (Isoptera: Rhinotermitidae), Sanaa A. Ibrahim, Gregg Henderson, Betty C.R. Zhu, Huixin Fei, and Roger A. Laine
Conformational Subspace in Simulation of Early-Stage Protein Folding, Wiktor Jurkowski, Michał Brylinski, Leszek Konieczny, Zdzisław Wiíniowski, and Irena Roterman
The Saccharomyces cerevisiae high mobility group box protein HMO1 contains two functional DNA binding domains, Edwin Kamau, Kevin T. Bauerle, and Anne Grove
Fluoroquinolone-dependent DNA supercoiling by vaccinia topoisomerase I, Edwin Kamau and Anne Grove
Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2, Joomyeong Kim, Anne Bergmann, Susan Lucas, Roger Stone, and Lisa Stubbs
Studies of the Role of the Drosophila scs and scs′ Insulators in Defining Boundaries of a Chromosome Puff, Emily J. Kuhn, Craig M. Hart, and Pamela K. Geyer
Conserving slow-growing, long-lived tree species: Input from the demography of a rare understory conifer, Taxus floridana, Charles Kwit, Carol C. Horvitz, and William J. Platt
Visualizing chromosome structure/organization, Eric Lam, Naohiro Kato, and Koichi Watanabe
Defining a link with asthma in mice congenitally deficient in eosinophils, James J. Lee, Dawn Dimina, Mi Mi P. Macias, Sergei I. Ochkur, Michael P. McGarry, Katie R. O'Neill, Cheryl Protheroe, Ralph Pero, Thanh Nguyen, Stephania A. Cormier, et al.
Crystal structure of a high-affinity variant of rat α-parvalbumin, Yong Hwan Lee, John J. Tanner, John D. Larson, and Michael T. Henzl
Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing, Wan Xiang Li, Hongwei Li, Rui Lu, Feng Li, Monica Dus, Peter Atkinson, Edward W.A. Brydon, Kyle L. Johnson, Adolfo García-Sastre, L. Andrew Ball, et al.
Polymorphisms within a polymorphism: SNPs in and around a polymorphic Alu insertion in intron 44 of the human dystrophin gene, Alan D. Lovell, Vania Yotova, Fengxia Xiao, Mark A. Batzer, and Damian Labuda
Kaposi's sarcoma-associated herpesvirus glycoprotein K8.1 is dispensable for virus entry, Rafael E. Luna, Fuchun Zhou, Abolgashem Baghian, Vladimir Chouljenko, Bagher Forghani, Shou-Jiang Gao, and Konstantin G. Kousoulas
A specific interface between integrin transmembrane helices and affinity for ligand, Bing Hao Luo, Timothy A. Springer, and Junichi Takagi
Allosteric β1 integrin antibodies that stabilize the low affinity state by preventing the swing-out of the hybrid domain, Bing Hao Luo, Konstantin Strokovich, Thomas Walz, Timothy A. Springer, and Junichi Takagi
Locking the β3 Integrin I-like Domain into High and Low Affinity Conformations with Disulfides, Bing Hao Luo, Junichi Takagi, and Timothy A. Springer
Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome, Rui Lu, Alexey Folimonov, Michael Shintaku, Wan Xiang Li, Bryce W. Falk, William O. Dawson, and Shou Wei Ding
Bioavailability and assimilation of sediment-associated benzo[a]pyrene by Ilyodrilus templetoni (Oligochaeta), Xiaoxia Lu, Danny D. Reible, and John W. Fleeger
Relative importance of ingested sediment versus pore water as uptake routes for PAHs to the deposit-feeding oligochaete Ilyodrilus templetoni, Xiaoxia Lu, Danny D. Reible, and John W. Fleeger