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Submissions from 1998

Identification of chondrocyte-specific regulatory elements in the Hoxc-8 promoter, S. Cormier-Regard, C. H. Rundle, and C. Kappen

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Adrenomedullin gene expression is developmentally regulated and induced by hypoxia in rat ventricular cardiac myocytes, Stephania Cormier-Regard, Son V. Nguyen, and William C. Claycomb

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Identification of a class of chromatin boundary elements, Olivier Cuvier, Craig M. Hart, and Ulrich K. Laemmli

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Assembly of a high-resolution map of the Acadian Usher syndrome region and localization of the nuclear EF-hand acidic gene, Margaret M. DeAngelis, John P. Doucet, Stacy Drury, Stephen T. Sherry, Myles B. Robichaux, Zhining Den, Mary Z. Pelias, Gregory M. Ditta, Bronya J.B. Keats, Prescott L. Deininger, et al.

Thiol-mediated disassembly and reassembly of [2Fe-2S] clusters in the redox-regulated transcription factor SoxR, H. Ding and B. Demple

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Grass shrimp Palaemonetes pugio predation on sediment- and stem-dwelling meiofauna: Field and laboratory experiments, Christopher S. Gregg and John W. Fleeger

Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box, A. Grove, A. Galeone, E. Yu, L. Mayol, and E.P. Geiduschek

AGE AND MOVEMENT OF A HYBRID ZONE: IMPLICATIONS FOR DISPERSAL DISTANCE IN POCKET GOPHERS AND THEIR CHEWING LICE, Mark S. Hafner, James W. Demastes, David J. Hafner, Theresa A. Spradling, Philip D. Sudman, and Steven A. Nadler

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Genetic traces of ancient demography, Henry C. Harpending, Marka Batzer, Michael Gurven, Lynn B. Jorde, Alan R. Rogers, and Stephen T. Sherry

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Overt and relational aggression in Russian nursery-school-age children: parenting style and marital linkages., C. H. Hart, D. A. Nelson, C. C. Robinson, S. F. Olsen, and M. K. McNeilly-Choque

Facilitation of chromatin dynamics by SARs, Craig M. Hart and Ulrich K. Laemmli

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Sympatric sea shells along the sea's shore: The geography of speciation in the marine gastropod Tegula, Michael E. Hellberg

Napthalene in formosan subterranean termite carton nests., Chen J, Henderson G, Grimm CC, Lloyd SW, and Laine RA

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A novel α-type carbonic anhydrase associated with the thylakoid membrane in Chlamydomonas reinhardtii is required for growth at ambient CO2, Jan Karlsson, Adrian K. Ciarke, Zhi Yuan Chen, Stephanie Y. Hugghins, Youn Il Park, H. David Husic, James V. Moroney, and Göran Samuelsson

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Effects of ammonium and non-ammonium salt additions on methane oxidation by Methylosinus trichosporium OB3b and maine forest soils, G. M. King and S. Schnell

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Transformation and transport of inorganic nitrogen in sediments of a southeast Asian mangrove forest, Erik Kristensen, Mikael H. Jensen, Gary T. Banta, Kim Hansen, Marianne Holmer, and Gary M. King

Transcription factor IIIB: The architecture of its DNA complex, and its roles in initiation of transcription by RNA polymerase III, A. Kumar, A. Grove, G.A. Kassavetis, and E.P. Geiduschek

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Purification, crystallization and preliminary X-ray diffraction studies of retinal dehydrogenase type II, Audrey L. Lamb, Xianshu Wang, Joseph L. Napoli, and Marcia E. Newcomer

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Molecular cloning and hormonal regulation of a murine epididymal retinoic acid-binding protein messenger ribonucleic acid, Jean Jacques Lareyre, Weng Li Zheng, Guang Quan Zhao, Susan Kasper, Marcia E. Newcomer, Robert J. Matusik, David E. Ong, and Marie Claire Orgebin-Crist

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Monophyletic subgroups of the tribe Millettieae (Leguminosae) as revealed by phytochrome nucleotide sequence data, Matt Lavin, Elisa Eshbaugh, Jer Ming Hu, Sarah Mathews, and Robert A. Sharrock

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Genetic evidence for the proto-Austronesian homeland in Asia: mtDNA and nuclear DNA variation in Taiwanese aboriginal tribes, Terry Melton, Stephanie Clifford, Jeremy Martinson, Mark Batzer, and Mark Stoneking

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Estimating African American admixture proportions by use of population- specific alleles, Esteban J. Parra, Amy Marcini, Joshua Akey, Jeremy Martinson, Mark A. Batzer, Richard Cooper, Terrence Forrester, David B. Allison, Ranjan Deka, Robert E. Ferrell, et al.

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Crystal structure of apo-glycine N-methyltransferase (GNMT), R. Pattanayek, M. E. Newcomer, and C. Wagner

Binding sites on native and multimeric vitronectin exhibit similar affinity for heparin: The influence of self-association and multivalence on ligand binding, Cynthia B. Peterson

Two new subspecies of Cinnycerthia fulva (Aves : Troglodytidae) from the southern Andes, JV Remsen and Brumfield

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Carbon monoxide oxidation by bacteria associated with the roots of freshwater macrophytes, Jeremy J. Rich and G. M. King

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Activation of signal transducers and activators of transcription 1 and 3 by leukemia inhibitory factor, oncostatin-M, and interferon-γ in adipocytes, Jacqueline M. Stephens, Steven J. Lumpkin, and Jordan B. Fishman

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The mouse deafness locus (dn) is associated with an inversion on chromosome 19, Ana M. Viñas, Stacy S. Drury, Margaret M. Deangelis, Zhining Den, Jer Min Huang, Charles I. Berlin, Jay D. Hunt, Mark A. Batzer, Prescott L. Deininger, and Bronya J.b. Keats

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Mycobacterium avium complex augments macrophage HIV-1 production and increases CCR5 expression, S. M. Wahl, T. Greenwell-Wild, G. Peng, H. Hale-Donze, T. M. Doherty, D. Mizel, and J. M. Orenstein

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Foraging ecology of the Philippine flying lemur (Cynocephalus volans), E. William Wischusen and Milo E. Richmond

Submissions from 1997

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Identification and characterization of two polymorphic Ya5 Alu repeats, Santosh S. Arcot, Margaret M. DeAngelis, Stephen T. Sherry, Aaron W. Adamson, Jane E. Lamerdin, Prescott L. Deininger, Anthony V. Carrano, and Mark A. Batzer

Cysteine-to-alanine replacements in the Escherichia coli SoxR protein and the role of the [2Fe-2S] centers in transcriptional activation, T.M. Bradley, E. Hidalgo, V. Leautaud, H. Ding, and B. Demple

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Regulation of root-associated methanotrophy by oxygen availability in the rhizosphere of two aquatic macrophytes, Aram Calhoun and Gary M. King

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Response of a benthic food web to hydrocarbon contamination, Kevin R. Carman, John W. Fleeger, and Steven M. Pomarico

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Cloning and overexpression of two cDNAs encoding the low-CO2-inducible chloroplast envelope protein LIP-36 from Chlamydomonas reinhardtii, Zhi Yuan Chen, Lara L. Lavigne, Catherine B. Mason, and James V. Moroney

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In vivo kinetics of a redox-regulated transcriptional switch, Huangen Ding and Bruce Demple

Nomenclature of glycolipids (IUPAC Recommendations 1997), H.B.F. Dixon, J.F.G. Vliegenthart, A. Cornish-Bowden, A. Kotyk, A. Cornish-Bowden, M.A. Chester, A.J. Barrett, J.C. Rigg, B.J. Whyte, J.R. Bull, et al.

DO BLACK-TAILED PRAIRIE DOGS MINIMIZE INBREEDING?, F Stephen Dobson, Ronald K. Chesser, John L. Hoogland, Derrick W. Sugg, and David W. Foltz

Electron transfer and energy coupling in cytochrome bc1 Complex, P.L. Dutton, C.C. Page, X. Chen, A. Palmitessa, R.E. Sharp, H. Ding, F. Daldal, and C.C. Moser

HYBRIDIZATION FREQUENCY IS NEGATIVELY CORRELATED WITH DIVERGENCE TIME OF MITOCHONDRIAL DNA HAPLOTYPES IN A SEA STAR (LEPTASTERIAS SPP.) SPECIES COMPLEX, David W. Foltz

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The use of fluorescent probes to characterize conformational changes in the interaction between vitronectin and plasminogen activator inhibitor-1, Angelia Gibson, Kunnumal Baburaj, Duane E. Day, Ingrid Verhamme, Joseph D. Shore, and Cynthia B. Peterson

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Predator deterrence and 2,4-dibromophenol conservation by the enteropneusts Saccoglossus bromophenolosus and Protoglossus graveolens, Cem Giray and Gary M. King

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Effect of naturally occurring bromophenols on sulfate reduction and ammonia oxidation in intertidal sediments, C. Giray and G. M. King

Localizing flexibility within the target site of DNA-bending proteins, A. Grove and E.P. Geiduschek

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Twin hydroxymethyluracil-A base pair steps define the binding site for the DNA-bending protein TF1, Anne Grove, Marxa L. Figueiredo, Aldo Galeone, Luciano Mayol, and E. Peter Geiduschek

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The scs' boundary element: Characterization of boundary element- associated factors, Craig M. Hart, Keji Zhao, and Ulrich K. Laemmli

Redox signal transduction via iron-sulfur clusters in the SoxR transcription activator, E. Hidalgo, H. Ding, and B. Demple

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Redox signal transduction: Mutations shifting [2Fe-2S] centers of the SoxR sensor-regulator to the oxidized form, Elena Hidalgo, Huangen Ding, and Bruce Demple

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The human homolog of a mouse-imprinted gene, Peg3, maps to a zinc finger gene-rich region of human chromosome 19q13.4, J. Kim, L. Ashworth, E. Branscomb, and L. Stubbs

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Stability of trifluoromethane in forest soils and methanotrophic cultures, Gary M. King

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Information capacity of the carbohydrate code, Roger A. Laine

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Epidermal cell fate and patterning in leaves, John C. Larkin, M. David Marks, Jeanette Nadeau, and Fred Sack

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Phytochrome gene diversity, S. Mathews and R. A. Sharrock

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Crystal structure of (R,R)-N,N',-(2,2'-bipyridine-6,6'-dimethylenediyl)-bis-(2,2'-dimethoxy-1,1'-binaphthalene-3-carboxamide) tetratoluene solvate, (C58H46O6N4)2 · 4C7H8, S. Pakhomova, J. Ondrácek, J. Hodacová, and I. Stibor

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Crystal structure of 25,27-dipropoxy-26,28-dihydroxycalix[4]arene, C34H36O4, S. Pakhomova, J. Ondrácek, M. Vindyš, and I. Stibor

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Substitutions at position 146 of cytochrome b affect drastically the properties of heme b(L) and the Q(o) site of Rhodobacter capsulatus cytochrome bc1 complex, A. Sami Saribaş, Huangen Ding, P. Leslie Dutton, and Fevzi Daldal

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Modeling human evolution - to tree or not to tree?, Stephen T. Sherry and Mark A. Batzer

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Tumor necrosis factor-α-induced insulin resistance in 3T3-L1 adipocytes is accompanied by a loss of insulin receptor substrate-1 and GLUT4 expression without a loss of insulin receptor-mediated signal transduction, Jacqueline M. Stephens, Jongsoon Lee, and Paul F. Pilch

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Alu Insertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa, Mark Stoneking, Jennifer J. Fontius, Stephanie L. Clifford, Himla Soodyall, Santosh S. Arcot, Nilmani Saha, Trefor Jenkins, Mohammad A. Tahir, Prescott L. Deininger, and Mark A. Batzer

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Native and multimeric vitronectin exhibit similar affinity for heparin: Differences in heparin binding properties induced upon denaturation are due to self-association into a multivalent form, Ping Zhuang, Anthony I. Chen, and Cynthia B. Peterson

Submissions from 1996

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Alu fossil relics - distribution and insertion polymorphism, Santosh S. Arcot, Aaron W. Adamson, Jane E. Lamerdin, Brian Kanagy, Prescott L. Deininger, Anthony V. Carrano, and Mark A. Batzer

Genetic differentiation and taxonomy in the House Wren species group, Brumfield and AP Capparella

Geographic variation and species limits in Cinnycerthia wrens of the Andes, Brumfield and JV Remsen

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Historical diversification of birds in Northwestern South America: A molecular perspective on the role of vicariant events, Robb T. Brumfield and A. P. Capparella

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Response of sedimentary bacteria in a Louisiana salt marsh to contamination by diesel fuel, Kevin R. Carman, Jay C. Means, and Steven C. Pomarico

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A low-CO2-inducible gene encoding an alanine:α-ketoglutarate aminotransferase in Chlamydomonas reinhardtii, Zhi Yuan Chen, Mark D. Burow, Catherine B. Mason, and James V. Moroney

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Genetics of oviposition success of a thelytokous fairyfly parasitoid, Anagrus delicatus, James T. Cronin and Donald R. Strong

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Glutathione-mediated destabilization in vitro of [2Fe-2S] centers in the SoxR regulatory protein, Huangen Ding and Bruce Demple

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The redox state of the [2Fe-2S] clusters in SoxR protein regulates its activity as a transcription factor, Huangen Ding, Elena Hidalgo, and Bruce Demple

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Acylation of glucosaminyl phosphatidylinositol revisited. Palmitoyl-CoA dependent palmitoylation of the inositol residue of a synthetic dioctanoyl glucosaminyl phosphatidylinositol by hamster membranes permits efficient mannosylation of the glucosamine residue, William T. Doerrler, Jianhua Ye, J. R. Falck, and Mark A. Lehrman

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Activation of δ-globin gene expression by erythroid Krupple-like factor: A potential approach for gene therapy of sickle cell disease, David Donze, Paxson H. Jeancake, and Tim M. Townes

Localized DNA flexibility contributes to target site selection by DNA-bending proteins, A. Grove, A. Galeone, L. Mayol, and E.P. Geiduschek

On the connection between inherent DNA flexure and preferred binding of hydroxymethyluracil-containing DNA by the type II DNA-binding protein TF1, A. Grove, A. Galeone, L. Mayol, and E.P. Geiduschek

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Impact of the soft-shell clam Mya arenaria on sulfate reduction in an intertidal sediment, Kim Hansen, Gary M. King, and Erik Kristensen

Structure of the Bacillus subtilis phage SPO1-encoded type II DNA-binding protein TF1 in solution, X. Jia, A. Grove, M. Ivancic, V.L. Hsu, E.P. Geiduschek, and D.R. Kearns

cDNA cloning and gene expression of ascorbate oxidase in tobacco, N. Kato and M. Esaka

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In situ analyses of methane oxidation associated with the roots and rhizomes of a bur reed, Sparganium eurycarpum, in a Maine wetland, G. M. King

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DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement, Alec Knight, Mark A. Batzer, Mark Stoneking, Hemant K. Tiwari, W. Douglas Scheer, Rene J. Herrera, and Prescott L. Deininger

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Acute depression of mitochondrial protein synthesis during anoxia: Contributions of oxygen sensing, matrix acidification, and redox state, Kurt E. Kwast and Steven C. Hand

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Oxygen and pH regulation of protein synthesis in mitochondria from Artemia franciscana embryos, Kurt E. Kwast and Steven C. Hand

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Metabolism of gemmules from the freshwater sponge Eunapius fragilis during diapause and post-diapause states, Stephen H. Loomis, Steven C. Hand, and Paul E. Fell

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Carbohydrate mobilization during germination of post-diapausing gemmules of the freshwater sponge Eunapius fragilis, Stephen H. Loomis, Louis F. Ungemach, Bruce R. Branchini, Steven C. Hand, and Paul E. Fell

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The phytochrome gene family in grasses (Poaceae): A phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms, S. Mathews and Robert A. Sharrock

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The mobile genetic element Alu in the human genome, Gabriel E. Novick, Mark A. Batzer, Prescott L. Deininger, and Rene J. Herrera

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Pervanadate activation of intracellular kinases leads to tyrosine phosphorylation and shedding of syndecan-1, Jane Reiland, Vanessa L. Ott, Connie S. Lebakken, Charles Yeaman, James Mccarthy, and Alan C. Rapraeger

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Regulation of methane oxidation in a freshwater wetland by water table changes and anoxia, Peter Roslev and Gary M. King

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Responses of methanotrophic activity in soils and cultures to water stress, S. Schnell and G. M. King

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The expression and regulation of STATs during 3T3-L1 adipocyte differentiation, Jacqueline M. Stephens, Ron F. Morrison, and Paul F. Pilch

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Urea production and turnover following the addition of AMP, CMP, RNA and a protein mixture to a marine sediment, Mette S. Therkildsen, Gary M. King, and Bente Aa Lomstein

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Effect of mutations on the sensitivity of human beta-cell glucokinase to liver regulatory protein, M. Veiga-da-Cunha, L. Z. Xu, Y. H. Lee, D. Marotta, S. J. Pilkis, and E. Van Schaftingen

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Effects of assembly and mutations outside the active site on the functional pH dependence of Escherichia coli aspartate transcarbamylase, Xiaoling Yuan, Vince J. LiCata, and Norma M. Allewell

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Characterization of the denaturation and renaturation of human plasma vitronectin I. Biophysical characterization of protein unfolding and multimerization, Ping Zhuang, Michael N. Blackburn, and Cynthia B. Peterson

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Characterization of the denaturation and renaturation of human plasma vitronectin II. Investigation into the mechanism of formation of multimers, Ping Zhuang, Huo Li, Jason G. Williams, Nancy V. Wagner, Dietmar Seiffert, and Cynthia B. Peterson

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Dolichyl-phosphomannose synthase from the Archae Thermoplasma acidophilum, Betty C.R. Zhu and Roger A. Laine

Submissions from 1995

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The kinetics of quantal transmitter release from retinal amacrine cells, Salvador Borges, Evanna Gleason, Michael Turelli, and Martin Wilson

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Identification of a Chlamydomonas reinhardtii chloroplast gene with significant homology to bacterial genes involved in cytochrome c biosynthesis, Zhi Yuan Chen and James V. Moroney

Ion Pair Formation between Basic Residues at 144 of the Cyt b Polypeptide and the Ubiquinones at the Q0 Site of the Cyt bc1 Complex, H. Ding, F. Daldal, and P.L. Dutton

Ubiquinone Pair in the Q0 Site Central to the Primary Energy Conversion Reactions of Cytochrome bc1 Complex, H. Ding, C.C. Moser, D.E. Robertson, M.K. Tokito, F. Daldal, and P.L. Dutton

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Role of erythroid Kruppel-like factor in human γ- to β-globin gene switching, D. Donze, T. M. Townes, and J. J. Bieker

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Electrogenic Na-Ca exchange clears Ca2+ loads from retinal amacrine cells in culture, E. Gleason, S. Borges, and M. Wilson