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Submissions from 2010

Caloric restriction with or without exercise: the fitness versus fatness debate, D Enette Larson-Meyer, Leanne Redman, Leonie K. Heilbronn, Corby K. Martin, and Eric Ravussin

Influence of soils and topography on Amazonian tree diversity: A landscape-scale study, Susan G.W. Laurance, William F. Laurance, Ana Andrade, Philip M. Fearnside, Kyle E. Harms, Alberto Vicentini, and Regina C.C. Luizão

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BB0250 of Borrelia burgdorferi is a conserved and essential inner membrane protein required for cell division, Fang Ting Liang, Qilong Xu, Rakesh Sikdar, Ying Xiao, James S. Cox, and William T. Doerrler

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Iron-binding activity of human iron-sulfur cluster assembly protein hIscA1, Jianxin Lu, Jacob P. Bitoun, Guoqiang Tan, Wu Wang, Wenguang Min, and Huangen Ding

Toxic effects of 2-deoxy-D-galactose on Coptotermes formosanus (Isoptera: Rhinotermitidae) and symbionts., Veillon L, Muniruzzaman S, Henderson G, and Laine RA

Host feeding patterns of culex mosquitoes (Diptera: Culicidae) in east baton rouge Parish, Louisiana, Andrew J. MacKay, Wayne L. Kramer, Jennifer K. Meece, Robb T. Brumfield, and Lane D. Foil

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Behavioral and physiological plasticity: Rapid changes during social ascent in an African cichlid fish, Karen P. Maruska and Russell D. Fernald

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Reproductive status regulates expression of sex steroid and GnRH receptors in the olfactory bulb, Karen P. Maruska and Russell D. Fernald

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Steroid receptor expression in the fish inner earvaries with sex, social status, and reproductive state, Karen P. Maruska and Russell D. Fernald

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Evolutionary studies illuminate the structural-functional model of plant phytochromes, Sarah Mathews

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A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants, Sarah Mathews, Mark D. Clements, and Mark A. Beilstein

Constituents of cinnamon inhibit bacterial acetyl CoA carboxylase, Glen Meades, Rachel L. Henken, Grover L. Waldrop, Md Mukhlesur Rahman, S Douglass Gilman, Guy P. Kamatou, Alvaro M. Viljoen, and Simon Gibbons

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Nuclear actin-related proteins at the core of epigenetic control, Richard B. Meagher, Muthugapatti K. Kandasamy, Aaron P. Smith, and Elizabeth C. McKinney

Molecular phylogenetic analyses of genus Crocodylus (Eusuchia, Crocodylia, Crocodylidae) and the taxonomic position of Crocodylus porosus, P. R. Meganathan, Bhawna Dubey, Mark A. Batzer, David A. Ray, and Ikramul Haque

Constituents of Calamintha ashei: effects on Florida sandhill species, Marios A. Menelaou, Hidelisa P. Henandez, Francisco A. Macías, Jeffrey D. Weidenhamer, G Bruce Williamson, Frank R. Fronczek, Helga D. Fischer, and Nikolaus H. Fischer

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Metabolic preconditioning of cells with AICAR-riboside: Improved cryopreservation and cell-type specific impacts on energetics and proliferation, Michael A. Menze, Nilay Chakraborty, Matthew Clavenna, Mitali Banerjee, Xiang Hong Liu, Mehmet Toner, and Steven C. Hand

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Mechanisms of apoptosis in Crustacea: What conditions induce versus suppress cell death?, Michael A. Menze, Grady Fortner, Suman Nag, and Steven C. Hand

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Heads or tails: L1 insertion-associated 5' homopolymeric sequences, Thomas J. Meyer, Deepa Srikanta, Erin M. Conlin, and Mark A. Batzer

Discovery of novel antibacterials, J. Richard Miller and Grover L. Waldrop

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Location, location, location: Compartmentalization of early events in leukotriene biosynthesis, Marcia E. Newcomer and Nathaniel C. Gilbert

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Location, location, location: Compartmentalization of early events in leukotriene biosynthesis (Journal of Biological Chemistry (2010) 285, (25109-25114)), Marcia E. Newcomer and Nathaniel C. Gilbert

Major differences in the proportion of amino acid fiber types transmitting taste information from oral and extraoral regions in the channel catfish, Kazuaki Ogawa and John Caprio

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Genome structures and halophyte-specific gene expression of the extremophile thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and arabidopsis, Dong Ha Oh, Maheshi Dassanayake, Jeffrey S. Haas, Anna Kropornika, Chris Wright, Matilde Paino d'Urzo, Hyewon Hong, Shahjahan Ali, Alvaro Hernandez, Georgina M. Lambert, et al.

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Intracellular consequences of SOS1 deficiency during salt stress, Dong Ha Oh, Sang Yeol Lee, Ray A. Bressan, Dae Jin Yun, and Hans J. Bohnert

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Expression of a low CO2-inducible protein, LCI1, increases inorganic carbon uptake in the green alga Chlamydomonas reinhardtii, Norikazu Ohnishi, Hideya Fukuzawa, Bratati Mukherjee, Tomoki Tsujikawa, Mari Yanase, Hirobumi Nakano, and James V. Moroney

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A comparative study of salt tolerance parameters in 11 wild relatives of Arabidopsis thaliana, Francesco Orsini, Matilde Paino D'Urzo, Gunsu Inan, Sara Serra, Dong Ha Oh, Michael V. Mickelbart, Federica Consiglio, Xia Li, Jae Cheol Jeong, Dae Jin Yun, et al.

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PSiFR: An integrated resource for prediction of protein structure and function, Shashi B. Pandit, Michal Brylinski, Hongyi Zhou, Mu Gao, Adrian K. Arakaki, and Jeffrey Skolnick

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Six RNA viruses and forty-one hosts: Viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems, Poornima Parameswaran, Ella Sklan, Courtney Wilkins, Trever Burgon, Melanie A. Samuel, Rui Lu, K. Mark Ansel, Vigo Heissmeyer, Shirit Einav, William Jackson, et al.

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Host behaviour and exposure risk in an insect-pathogen interaction, Benjamin J. Parker, Bret D. Elderd, and Greg Dwyer

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Intracellular pH regulation in isolated trout gill mitochondrion-rich (MR) cell subtypes: Evidence for Na+/H+ activity, Scott K. Parks, Martin Tresguerres, Fernando Galvez, and Greg G. Goss

The toxicological interaction between ocean acidity and metals in coastal meiobenthic copepods, Pierre-Yves Pascal, John W. Fleeger, Fernando Galvez, and Kevin R. Carman

Urate Is a Ligand for the Transcriptional Regulator PecS, I.C. Perera and A. Grove

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Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators, Inoka C. Perera and Anne Grove

PHYLOGENETIC RELATIONSHIPS OF THE WHITE-THROATED BARBTAIL, PREMNOPLEX TATEI (FURNARIIDAE), AN ENDEMIC OF THE NORTHEASTERN MOUNTAIN RANGE OF VENEZUELA, Jorge L. Perez-Eman, Laura L. Hernandez, and Robb T. Brumfield

Dung beetle communities: a neotropical-north temperate comparison, Meghan G. Radtke, Cláudio R. Fonseca, and G Bruce Williamson

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Laboratory methods for the analysis of primate mobile elements, David A. Ray, Kyudong Han, Jerilyn A. Walker, and Mark A. Batzer

Edge behaviour in a minute parasitic wasp, John D. Reeve and James T. Cronin

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Immunomodulation with IL-4Rα antisense oligonucleotide prevents respiratory syncytial virus-mediated pulmonary disease, Michael J. Ripple, Dahui You, Srinivasa Honnegowda, Joseph D. Giaimo, Andrew B. Sewell, David M. Becnel, and Stephania A. Cormier

Documentation of significant electron transport defects on the reducing side of photosystem II upon removal of the PsbP and PsbQ extrinsic proteins, Johnna L. Roose, Laurie K. Frankel, and Terry M. Bricker

Function of PsbO, the photosystem II manganese-stabilizing protein: probing the role of aspartic acid 157, Johnna L. Roose, Charles F. Yocum, and Hana Popelkova

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Targeted gene replacement by homologous recombination in Drosophila stimulates production of second-site mutations, Swarnava Roy and Craig M. Hart

Hydrogenation selectivity of the Bicyclo[4.4.0]decane ring system of valencanes, Anne M. Sauer, William E. Crowe, Gregg Henderson, and Roger A. Laine

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Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences, Diane I. Scaduto, Jeremy M. Brown, Wade C. Haaland, Derrick J. Zwickl, David M. Hillis, and Michael L. Metzker

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Inefficient Tat-dependent export of periplasmic amidases in an Escherichia coli strain with mutations in two DedA family genes, Rakesh Sikdar and William T. Doerrler

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Accurate quantification of seasonal rainfall and associated climate-wildfire relationships, Matthew G. Slocum, William J. Platt, Brian Beckage, Steve L. Orzell, and Wayne Taylor

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Histone H2A.Z regulates the expression of several classes of phosphate starvation response genes but not as a transcriptional activator, Aaron P. Smith, Ajay Jain, Roger B. Deal, Vinay K. Nagarajan, Michael D. Poling, Kashchandra G. Raghothama, and Richard B. Meagher

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A conserved interaction between the SDI domain of Bre2 and the Dpy-30 domain of Sdc1 is required for histone methylation and gene expression, Paul F. South, Ian M. Fingerman, Douglas P. Mersman, Hai Ning Du, and Scott D. Briggs

Preface to special issue on molecular and cellular aspects of adipocyte development and function, Jacqueline M. Stephens and Ruth B.S. Harris

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Diversity of human copy number variation and multicopy genes, Peter H. Sudmant, Jacob O. Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko, Nick Sampas, Laurakay Bruhn, Jay Shendure, Evan E. Eichler, et al.

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Multiple Ca2+-dependent mechanisms regulate L-type Ca 2+ current in retinal amacrine cells, Merve Tekmen and Evanna Gleason

Translocation to a fragmented landscape: survival, movement, and site fidelity of Northern Bobwhites, Theron M. Terhune, D. Clay Sisson, William E. Palmer, Brant C. Faircloth, H. Lee Stribling, and John P. Carroll

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Song divergence by sensory drive in amazonian birds, Joseph A. Tobias, Job Aben, Robb T. Brumfield, Elizabeth P. Derryberry, Wouter Halfwerk, Hans Slabbekoorn, and Nathalie Seddon

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Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana, Jelle Van Leene, Jens Hollunder, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Hilde Stals, Gert Van Isterdael, Aurine Verkest, Sandy Neirynck, Yelle Buffel, et al.

The tra locus of streptomycete plasmid pIJ101 mediates efficient transfer of a circular but not a linear version of the same replicon, Jing Wang and Gregg S. Pettis

Dissociation of the α-subunit Calf-2 domain and the β-subunit I-EGF4 domain in integrin activation and signaling, Wei Wang, Guanyuan Fu, and Bing-Hao Luo

Structural basis of integrin transmembrane activation, Wei Wang and Bing-Hao Luo

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In vivo evidence for the iron-binding activity of an iron-sulfur cluster assembly protein IscA in Escherichia coli, Wu Wang, Hao Huang, Guoqiang Tan, Fan Si, Min Liu, Aaron P. Landry, Jianxin Lu, and Huangen Ding

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The genome of a songbird, Wesley C. Warren, David F. Clayton, Hans Ellegren, Arthur P. Arnold, Ladeana W. Hillier, Axel Künstner, Steve Searle, Simon White, Albert J. Vilella, Susan Fairley, et al.

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Neuropoietin activates STAT3 independent of LIFR activation in adipocytes, Ursula A. White and Jacqueline M. Stephens

Transcriptional Control of Adipogenesis and Fat Cell Gene Expression, Ursula A. White and Jacqueline M. Stephens

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Transcriptional factors that promote formation of white adipose tissue, Ursula A. White and Jacqueline M. Stephens

Measuring wood specific gravity...Correctly, G Bruce Williamson and Michael C. Wiemann

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Mobile element scanning (ME-Scan) by targeted high-throughput sequencing, David J. Witherspoon, Jinchuan Xing, Yuhua Zhang, W. Scott Watkins, Mark A. Batzer, and Lynn B. Jorde

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The Electronic Structure Of Li2B4O7(110) And Li2B4O7(100), D Wooten, I Ketsman, J Xiao, Y B. Losovyj, D Wooten, J McClory, Y V. Burak, V T. Adamiv, J M. Brown, and P A. Dowben

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Increased lipid accumulation in the Chlamydomonas reinhardtii sta7-10 starchless isoamylase mutant and increased carbohydrate synthesis in complemented strains, Victoria H. Work, Randor Radakovits, Robert E. Jinkerson, Jonathan E. Meuser, Lee G. Elliott, David J. Vinyard, Lieve M.L. Laurens, G. Charles Dismukes, and Matthew C. Posewitz

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Thermodynamics of the DNA structural selectivity of the Pol I DNA polymerases from escherichia coli and thermus aquaticus, Andy J. Wowor, Kausiki Datta, Hiromi S. Brown, Gregory S. Thompson, Sreerupa Ray, Anne Grove, and Vince J. LiCata

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Functional traits and the growth-mortality trade-off in tropical trees, S. Joseph Wright, Kaoru Kitajima, Nathan J.B. Kraft, Peter B. Reich, Ian J. Wright, Daniel E. Bunker, Richard Condit, James W. Dalling, Stuart J. Davies, Sandra DíAz, et al.

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Behavioral flexibility and species invasions: The adaptive flexibility hypothesis, T. F. Wright, J. R. Eberhard, E. A. Hobson, M. L. Avery, and M. A. Russello

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Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs, Qingfa Wu, Yingjun Luo, Rui Lu, Nelson Lau, Eric C. Lai, Wan Xiang Li, and Shou Wei Ding

The C-terminal domain of yeast high mobility group protein HMO1 mediates lateral protein accretion and in-phase DNA bending, L. Xiao, A.M. Williams, and A. Grove

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A new lysozyme from the eastern oyster, Crassostrea virginica, and a possible evolutionary pathway for i-type lysozymes in bivalves from host defense to digestion, Qinggang Xue, Michael E. Hellberg, Kevin L. Schey, Naoki Itoh, Ron I. Eytan, Richard K. Cooper, and Jerome F. La Peyre

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Obesity increases the production of proinflammatory mediators from adipose tissue T cells and compromises TCR repertoire diversity: Implications for systemic inflammation and insulin resistance, Hyunwon Yang, Yun Hee Youm, Bolormaa Vandanmagsar, Anthony Ravussin, Jeffrey M. Gimble, Frank Greenway, Jacqueline M. Stephens, Randall L. Mynatt, and Vishwa Deep Dixit

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Oxygen is required for the l-cysteine-mediated decomposition of protein-bound dinitrosyl-iron complexes, Juanjuan Yang, Xuewu Duan, Aaron P. Landry, and Huangen Ding

RNAi Suppression and Its Application, Xiaoping Yi and Rui Lu

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The Sll0606 protein is required for photosystem II assembly/stability in the cyanobacterium Synechocystis sp. PCC 6803, Shulu Zhang, Laurie K. Frankel, and Terry M. Bricker

Structural requirements for repellency: Norsesquiterpenes and sesquiterpenoid derivatives of nootkatone against the Formosan subterranean termite (Isoptera: Rhinotermitidae), B.C.R. Zhu, G. Henderson, A.M. Sauer, W. Crowe, and R.A. Laine

Submissions from 2009

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Staggered t-structures on derived categories of equivariant coherent sheaves, Pramod N. Achar

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Perverse coherent sheaves and the geometry of special pieces in the unipotent variety, Pramod N. Achar and Daniel S. Sage

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Staggered sheaves on partial flag varieties, Pramod N. Achar and Daniel S. Sage

Effects of resuspension on benthic fluxes of oxygen, nutrients, dissolved inorganic carbon, iron and manganese in the Gulf of Finland, Baltic Sea, Elin Almroth, Anders Tengberg, Johan H. Andersson, Svetlana Pakhomova, and Per O.J. Hall

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St. John's Wort inhibits adipocyte differentiation and induces insulin resistance in adipocytes, Zhaleh Amini, Bryant Boyd, Julie Doucet, David M. Ribnicky, and Jacqueline M. Stephens

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Environmentally persistent free radicals amplify ultrafine particle mediated cellular oxidative stress and cytotoxicity, Shrilatha Balakrishna, Slawo Lomnicki, Kevin M. McAvey, Richard B. Cole, Barry Dellinger, and Stephania A. Cormier

Vegetation, fire, and feedbacks: A disturbance-mediated model of savannas, Brian Beckage, William J. Platt, and Louis J. Gross

Early floral development of Heliconia latispatha (Heliconiaceae), a key taxon for understanding the evolution of flower development in the Zingiberales., Kirchoff BK, Lagomarsino LP, Newman WH, Bartlett ME, and Specht CD

Interactions of plasminogen activator inhibitor-1 with vitronectin involve an extensive binding surface and induce mutual conformational rearrangements, Grant E. Blouse, Daniel M. Dupont, Christine R. Schar, Jan K. Jensen, Kenneth H. Minor, John Y. Anagli, Henrik Gårdsvoll, Michael Ploug, Cynthia B. Peterson, and Peter A. Andreasen

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A link between Aurora kinase and Clp1/Cdc14 regulation uncovered by the identification of a fission yeast borealin-like protein, K. Adam Bohnert, Jun Song Chen, Dawn M. Clifford, Craig W. Vander Kooi, and Kathleen L. Gould

The utility of molecular dynamics simulations for understanding site-directed mutagenesis of glycine residues in biotin carboxylase, Tee Bordelon, Sten O. Nilsson Lill, and Grover L. Waldrop

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Structure and functions of keratin proteins in simple, stratified, keratinized and cornified epithelia, Hermann H. Bragulla and Dominique G. Homberger

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PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy, Jeremy M. Brown and Robert Eldabaje

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FINDSITELHM: A threading-based approach to ligand homology modeling, Michal Brylinski and Jeffrey Skolnick

Ecology Predicts Levels of Genetic Differentiation in Neotropical Birds, Curtis W. Burney and Robb T. Brumfield

Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation, Matthew D. Carling and Robb T. Brumfield

A model of geographical, environmental and regional variation in vegetation composition of pyrogenic grasslands of Florida, Susan C. Carr, Kevin M. Robertson, William J. Platt, and Robert K. Peet

Rpb1 sumoylation in response to UV radiation or transcriptional impairment in yeast, Xuefeng Chen, Baojin Ding, Danielle LeJeune, Christine Ruggiero, and Shisheng Li

Geocerthia, a new genus of terrestrial ovenbird (Aves: Passeriformes: Furnariidae), R. Terry Chesser, Santiago Claramunt, Elizabeth Derryberry, and Robb T. Brumfield

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Migration-selection balance and local adaptation of mitochondrial haplotypes in Rufous-Collared Sparrows (Zonotrichia Capensis) along an elevational gradient, Zachary A. Cheviron and Robb T. Brumfield

The amino terminus of herpes simplex virus type 1 glycoprotein K (gK) modulates gB-mediated virus-induced cell fusion and virion egress, Vladimir N. Chouljenko, Arun V. Iyer, Sona Chowdhury, Dmitry V. Chouljenko, and Konstantin G. Kousoulas

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The impact of retrotransposons on human genome evolution, Richard Cordaux and Mark A. Batzer

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Habitat edges, within-patch dispersion of hosts, and parasitoid oviposition behavior, James T. Cronin

Movement, colonization, and establishment success of a planthopper of prairie potholes, Delphacodes scolochloa (Hemiptera: Delphacidae), James T. Cronin