Submissions from 2012
Testing the role of patch openness as a causal mechanism for apparent area sensitivity in a grassland specialist, A.C. Keyel, C.M. Bauer, C.R. Lattin, L.M. Romero, and J.M. Reed
Imprinting control region (ICR) of the Peg3 domain, Joomyeong Kim, Muhammad B. Ekram, Hana Kim, Mohammad Faisal, Wesley D. Frey, Jennifer M. Huang, Kim Ngoc Tran, Michelle M. Kim, and Sungryul Yu
Recruitment and biological consequences of histone modification of H3K27me3 and H3K9me3., Joomyeong Kim and Hana Kim
Oxidized quinones signal onset of darkness directly to the cyanobacterial circadian oscillator, Yong Ick Kim, David J. Vinyard, Gennady M. Ananyev, G. Charles Dismukes, and Susan S. Golden
Temperature responses of carbon monoxide and hydrogen uptake by vegetated and unvegetated volcanic cinders, Caitlin E. King and Gary M. King
Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA, Gary M. King, Craig Judd, Cheryl R. Kuske, and Conor Smith
Analysis of composition and structure of coastal to mesopelagic bacterioplankton communities in the northern gulf of mexico, Gary M. King, Conor B. Smith, Bradley Tolar, and James T. Hollibaugh
Subordinate male cichlids retain reproductive competence during social suppression, Jacqueline M. Kustan, Karen P. Maruska, and Russell D. Fernald
Primary hemiepiphytism and gametophyte morphology in Elaphoglossum amygdalifolium (Dryopteridaceae), Laura P. Lagomarsino, Amanda L. Grusz, and Robbin C. Moran
Hypothalamus-pituitary-adrenal axis activity and the subsequent response to chronic stress differ depending upon life history stage, Christine R. Lattin, Carolyn M. Bauer, Robert de Bruijn, and L. Michael Romero
Pharmacological characterization of intracellular glucocorticoid receptors in nine tissues from house sparrow (Passer domesticus), C.R. Lattin, K. Waldron-Francis, J.W. Richardson, R. de Bruijn, C.M. Bauer, C.W. Breuner, and L. Michael Romero
Assessment of the mass, length, center of mass, and principal moment of inertia of body segments in adult males of the brown anole (Anolis sagrei) and green, or carolina, anole (Anolis carolinensis), Pierre Legreneur, Dominique G. Homberger, and Vincent Bels
Hemisphere-scale differences in conifer evolutionary dynamics, Andrew B. Leslie, Jeremy M. Beaulieu, Hardeep S. Rai, Peter R. Crane, Michael J. Donoghue, and Sarah Mathews
Implication of posttranslational histone modifications in nucleotide excision repair, Shisheng Li
Late embryogenesis abundant proteins protect human hepatoma cells during acute desiccation, Shumin Li, Nilay Chakraborty, Apurva Borcar, Michael A. Menze, Mehmet Toner, and Steven C. Hand
Differences in folate-protein interactions result in differing inhibition of native rat liver and recombinant glycine N-methyltransferase by 5-methyltetrahydrofolate, Zigmund Luka, Svetlana Pakhomova, Lioudmila V. Loukachevitch, Marcia E. Newcomer, and Conrad Wagner
Erratum to: An adaptive composite density estimator for k-tree sampling(Eur J Forest Res, 10.1007/s10342-011-0502-8), Steen Magnussen, Lutz Fehrman, and William J. Platt
Erratum to Selection Response Decomposition (SRD): A New Tool for Dissecting Differences and Similarities Between Matrices (Evol Biol, (2011), 38, (225-241), 10.1007/s11692-010-9107-2), G. Marroig, D. Melo, A. Porto, H. Sebastião, and G. Garcia
Characterization of cell proliferation throughout the brain of the African cichlid fish Astatotilapia burtoni and its regulation by social status, Karen P. Maruska, Russ E. Carpenter, and Russell D. Fernald
Contextual chemosensory urine signaling in an African cichlid fish, Karen P. Maruska and Russell D. Fernald
The African cichlid fish astatotilapia burtoni uses acoustic communication for reproduction: Sound production, hearing, and behavioral significance, Karen P. Maruska, Uyhun S. Ung, and Russell D. Fernald
Profundulus kreiseri, a new species of Profundulidae (Teleostei, Cyprinodontiformes) from northwestern Honduras, Wilfredo A. Matamoros, Jacob F. Schaefer, Carmen L. Hernández, and Prosanta Chakrabarty
The evolution of reproductive structures in seed plants: A re-examination based on insights from developmental genetics, Sarah Mathews and Elena M. Kramer
Tests of the link between functional innovation and positive selection at phytochrome a: The phylogenetic distribution of far-red high-irradiance responses in seedling development, Sarah Mathews and Donna Tremonte
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis, John E. McCormack, Brant C. Faircloth, Nicholas G. Crawford, Patricia Adair Gowaty, Robb T. Brumfield, and Travis C. Glenn
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences, John E. McCormack, James M. Maley, Sarah M. Hird, Elizabeth P. Derryberry, Gary R. Graves, and Robb T. Brumfield
An alu-based phylogeny of lemurs (infraorder: Lemuriformes), Adam T. McLain, Thomas J. Meyer, Christopher Faulk, Scott W. Herke, J Michael Oldenburg, Matthew G. Bourgeois, Camille F. Abshire, Christian Roos, and Mark A. Batzer
Charge-based interaction conserved within histone H3 lysine 4 (H3K4) methyltransferase complexes is needed for protein stability, histone methylation, and gene expression, Douglas P. Mersman, Hai Ning Du, Ian M. Fingerman, Paul F. South, and Scott D. Briggs
An alu-based phylogeny of gibbons (hylobatidae), Thomas J. Meyer, Adam T. McLain, J. Michael Oldenburg, Christopher Faulk, Matthew G. Bourgeois, Erin M. Conlin, Alan R. Mootnick, Pieter J. De Jong, Christian Roos, Lucia Carbone, et al.
Ethylene's role in phosphate starvation signaling: More than just a root growth regulator, Vinay K. Nagarajan and Aaron P. Smith
The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia, Luciano Nicolas Naka, Catherine L. Bechtoldt, L. Magalli Pinto Henriques, and Robb T. Brumfield
Serotonin 5-HT2A receptor activation potently inhibits TNF-alpha mediated inflammation in vivo, and blocks the development of asthma, F. J. Nau, B. G. Yu, J. Miller, T. Ahlert, S. Cormier, and C. D. Nichols
An examination of the behavioral correlates of subtypes of nonsocial play among Chinese preschoolers, Larry J. Nelson, Craig H. Hart, Chongming Yang, Peixia Wu, and Shenghua Jin
On the stoichiometry of Deinococcus radiodurans Dps-1 binding to duplex DNA, Khoa H. Nguyen, Luke T. Smith, Lijuan Xiao, Gargi Bhattacharyya, and Anne Grove
Metal binding at the Deinococcus radiodurans Dps-1 N-terminal metal site controls dodecameric assembly and DNA binding, Khoa Huynh Nguyen and Anne Grove
Identification of an oxygenic reaction center psbadc operon in the cyanobacterium gloeobacter violaceus PCC 7421, Tuan A. Nguyen, Jasmina Brescic, David J. Vinyard, Thenappan Chandrasekar, and G. Charles Dismukes
Life at the extreme: Lessons from the genome, D.-H. Oh, M. Dassanayake, H.J. Bohnert, and J.M. Cheeseman
Life at the extreme: Lessons from the genome, Dong Ha Oh, Maheshi Dassanayake, Hans J. Bohnert, and John M. Cheeseman
Effects of low salinity media on growth, condition, and gill ion transporter expression in juvenile Gulf killifish, Fundulus grandis, Joshua Patterson, Charlotte Bodinier, and Christopher Green
Long-Term Survival of Anoxia Despite Rapid ATP Decline in Embryos of the Annual Killifish Austrofundulus limnaeus, Jason E. Podrabsky, Michael A. Menze, and Steven C. Hand
Mutagenesis studies of the β i domain metal ion binding sites on integrin αvβ3 ligand binding affinity, Joel Raborn and Bing Hao Luo
Interaction of saccharomyces cerevisiae HMO2 domains with distorted DNA, Sreerupa Ray and Anne Grove
Serratia marcescens necrotizing fasciitis presenting as bilateral breast necrosis, Tayyab Rehman, Thomas A. Moore, and Leonardo Seoane
Functional comparison of Deinococcus radiodurans Dps proteins suggests distinct in vivo roles, B.J. Reon, K.H. Nguyen, G. Bhattacharyya, and A. Grove
St. John's Wort inhibits insulin signaling in murine and human adipocytes, Allison J. Richard, Zhaleh J. Amini, David M. Ribnicky, and Jacqueline M. Stephens
Ecological guild evolution and the discovery of the world's smallest vertebrate, Eric N. Rittmeyer, Allen Allison, Michael C. Gründler, Derrick K. Thompson, and Christopher C. Austin
The effects of sampling on delimiting species from multi-locus sequence data, Eric N. Rittmeyer and Christopher C. Austin
Tropical tree seedling growth responses to nitrogen, phosphorus and potassium addition, Louis S. Santiago, S. Joseph Wright, Kyle E. Harms, Joseph B. Yavitt, Carmi Korine, Milton N. Garcia, and Benjamin L. Turner
Adipogenesis, Kelesha Sarjeant and Jacqueline M. Stephens
Variable Responses of Lowland Tropical Forest Nutrient Status to Fertilization and Litter Manipulation, Emma J. Sayer, S. Joseph Wright, Edmund V.J. Tanner, Joseph B. Yavitt, Kyle E. Harms, Jennifer S. Powers, Michael Kaspari, Milton N. Garcia, and Benjamin L. Turner
Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes, Erin E. Schirtzinger, Erika S. Tavares, Lauren A. Gonzales, Jessica R. Eberhard, Cristina Y. Miyaki, Juan J. Sanchez, Alexis Hernandez, Heinrich Müeller, Gary R. Graves, Robert C. Fleischer, et al.
Density gradient enrichment of Escherichia coli lpxL mutants, David A. Six, Bliss Lambert, Christian R.H. Raetz, and William T. Doerrler
Further evidence for the likely completeness of the library of solved single domain protein structures, Jeffrey Skolnick, Hongyi Zhou, and Michal Brylinski
Assessment of polyaromatic hydrocarbon degradation by potentially pathogenic environmental Vibrio parahaemolyticus isolates from coastal Louisiana, USA, Conor B. Smith, Crystal N. Johnson, and Gary M. King
Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary, Alexey A. Soshnev, Bing He, Ryan M. Baxley, Nan Jiang, Craig M. Hart, Kai Tan, and Pamela K. Geyer
Revision of the endemic malagasy cavefish genus typhleotris (teleostei: Gobiiformes: milyeringidae), with discussion of its phylogenetic placement and description of a new species, John S. Sparks and Prosanta Chakrabarty
RIFL aims to be a new player in lipid metabolism, Jacqueline M. Stephens
The Fat Controller: Adipocyte Development, Jacqueline M. Stephens
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes, J.A. St John, E.L. Braun, S.R. Isberg, L.G. Miles, A.Y. Chong, J. Gongora, P. Dalzell, C. Moran, B. Bed'Hom, A. Abzhanov, et al.
Little evidence of systemic and adipose tissue inflammation in overweight individuals(†), Charmaine S. Tam, Jeffrey D. Covington, Eric Ravussin, and Leanne M. Redman
Defining insulin resistance from hyperinsulinemic-euglycemic clamps, Charmaine S. Tam, Wenting Xie, William D. Johnson, William T. Cefalu, Leanne M. Redman, and Eric Ravussin
Competition of zinc ion for the [2Fe-2S] cluster binding site in the diabetes drug target protein mitoNEET, Guoqiang Tan, Aaron P. Landry, Ruili Dai, Li Wang, Jianxin Lu, and Huangen Ding
Epithelial Na + sodium channels in magnocellular cells of the rat supraoptic and paraventricular nuclei, Ryoichi Teruyama, Mayumi Sakuraba, Lori L. Wilson, Narine E.J. Wandrey, and William E. Armstrong
Airway remodeling in chronic alcohol C57BL/6 mice with inhalation co-exposure to combustion-generated particulate matter, P. T. Thevenot, J. Saravia, T. Ahlert, M. A. Kelly, T. R. Dugas, and S. A. Cormier
The importance of suboscine birds as study systems in ecology and evolution, Joseph A. Tobias, Jeff D. Brawn, Robb T. Brumfield, Elizabeth P. Derryberry, Alexander N.G. Kirschel, and Nathalie Seddon
Primer3-new capabilities and interfaces, A. Untergasser, I. Cutcutache, T. Koressaar, J. Ye, B.C. Faircloth, M. Remm, and S.G. Rozen
Multilocus phylogenetic study of the Scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene, Hector Urbina and Meredith Blackwell
Remnant sugar maple (Acer saccharum subsp. skutchii) populations at their range edge: Characteristics, environmental constraints and conservation implications in tropical America, Yalma L. Vargas-Rodriguez and William J. Platt
Acetyl-CoA carboxylase as a target for antibacterial development, Grover L. Waldrop
The enzymes of biotin dependent CO₂ metabolism: what structures reveal about their reaction mechanisms, Grover L. Waldrop, Hazel M. Holden, and Martin St Maurice
Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers, Jerilyn A. Walker, Miriam K. Konkel, Brygg Ullmer, Christopher P. Monceaux, Oliver A. Ryder, Robert Hubley, Arian Fa Smit, and Mark A. Batzer
Dnt1 acts as a mitotic inhibitor of the spindle checkpoint protein dma1 in fission yeast, Yamei Wang, Wen Zhu Li, Alyssa E. Johnson, Zhou Qing Luo, Xue Li Sun, Anna Feoktistova, W. Hayes McDonald, Ian McLeod, John R. Yates, Kathleen L. Gould, et al.
The phylogenetic distribution and ecological role of carbon monoxide oxidation in the genus Burkholderia, Carolyn F. Weber and Gary M. King
Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes, Andrew Whitehead, Benjamin Dubansky, Charlotte Bodinier, Tzintzuni I. Garcia, Scott Miles, Chet Pilley, Vandana Raghunathan, Jennifer L. Roach, Nan Walker, Ronald B. Walter, et al.
Reply to Jenkins et al.: Evidence for contaminating oil exposure is closely linked in space and time to biological effects, Andrew Whitehead, Benjamin Dubansky, Charlotte Bodinier, Tzintzuni I. Garcia, Scott Miles, Chet Pilley, Vandana Raghunathan, Jennifer L. Roach, Nan Walker, Ronald B. Walter, et al.
Salinity- and population-dependent genome regulatory response during osmotic acclimation in the killifish (Fundulus heteroclitus) gill, Andrew Whitehead, Jennifer L. Roach, Shujun Zhang, and Fernando Galvez
Radial wood allocation in Schizolobium parahyba, G Bruce Williamson, Michael C. Wiemann, and James P. Geaghan
Insights into salt tolerance from the genome of Thellungiella salsuginea, Hua Jun Wu, Zhonghui Zhang, Jun Yi Wang, Dong Ha Oh, Maheshi Dassanayake, Binghang Liu, Quanfei Huang, Hai Xi Sun, Ran Xia, Yaorong Wu, et al.
Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales, Zhenxiang Xi, Brad R. Ruhfel, Hanno Schaefer, André M. Amorim, M. Sugumaran, Kenneth J. Wurdack, Peter K. Endress, Merran L. Matthews, Peter F. Stevens, Sarah Mathews, et al.
Angiogenic deficiency and adipose tissue dysfunction are associated with macrophage malfunction in SIRT1 -/- mice, Fen Xu, David Burk, Zhanguo Gao, Jun Yin, Xia Zhang, Jianping Weng, and Jianping Ye
On determination of low oxygen concentrations with Winkler technique, E. V. Yakushev, E. L. Vinogradova, A. V. Dubinin, A. V. Kostyleva, N. M. Men'shikova, and S. V. Pakhomova
Limited Type I IFNs Play a Role in the Pathogenesis of Respiratory Syncytial Virus in Neonatal Mice, D. H. You, G. Lee, B. Shrestha, L. Shen, and S. Cormier
Submissions from 2011
Up-regulation of P-glycoprotein reduces intracellular accumulation of beta amyloid: Investigation of P-glycoprotein as a novel therapeutic target for Alzheimer's disease, Alaa H. Abuznait, Courtney Cain, Drury Ingram, David Burk, and Amal Kaddoumi
Corrigendum to "Orbit closures in the enhanced nilpotent cone" [Adv. Math. 219 (1) (2008) 27-62], Pramod N. Achar and Anthony Henderson
Normality of orbit closures in the enhanced nilpotent cone, Pramod N. Achar, Anthony Henderson, and Benjamin F. Jones
Pieces of nilpotent cones for classical groups, Pramod N. Achar, Anthony Henderson, and Eric Sommers
Baric structures on triangulated categories and coherent sheaves, Pramod N. Achar and David Treumann
The bioinvasion of Guam: Inferring geographic origin, pace, pattern and process of an invasive lizard (Carlia) in the Pacific using multi-locus genomic data, Christopher C. Austin, Eric N. Rittmeyer, Lauren A. Oliver, John O. Andermann, George R. Zug, Gordon H. Rodda, and Nathan D. Jackson
Skeletal muscle mitochondrial capacity and insulin resistance in type 2 diabetes, Sudip Bajpeyi, Magdalena Pasarica, Cedric Moro, Kevin Conley, Sharon Jubrias, Olga Sereda, David H. Burk, Zhengyu Zhang, Alok Gupta, Lise Kjems, et al.
Environmentally persistent free radicals induce airway hyperresponsiveness in neonatal rat lungs, Shrilatha Balakrishna, Jordy Saravia, Paul Thevenot, Terry Ahlert, Slawo Lominiki, Barry Dellinger, and Stephania A. Cormier
Grass feedbacks on fire stabilize savannas, Brian Beckage, Louis J. Gross, and William J. Platt
Activation of the zymogen to urokinase-type plasminogen activator is associated with increased interdomain flexibility, Manja A. Behrens, Kenneth A. Botkjaer, Sumit Goswami, Cristiano L.P. Oliveira, Jan K. Jensen, Christine R. Schar, Paul J. Declerck, Cynthia B. Peterson, Peter A. Andreasen, and Jan Skov Pedersen
The fungi: 1, 2, 3 ... 5.1 million species?, Meredith Blackwell
On the cutting edge: Post-translational modifications in cytokinesis, K. Adam Bohnert and Kathleen L. Gould
Nonadaptive evolution of mitochondrial genome size, Bastien Boussau, Jeremy M. Brown, and Matthew K. Fujita
Auxiliary functions of the PsbO, PsbP and PsbQ proteins of higher plant Photosystem II: a critical analysis, Terry M. Bricker and Laurie K. Frankel
DIM SUM: demography and individual migration simulated using a Markov chain, JM Brown, K Savidge, and EJB McTavish
Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and function, Michal Brylinski, Mu Gao, and Jeffrey Skolnick
The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement, Michal Brylinski, Seung Yup Lee, Hongyi Zhou, and Jeffrey Skolnick
FINDSITE-metal: Integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level, Michal Brylinski and Jeffrey Skolnick