Submissions from 2014
Use of Protein cross-linking and radiolytic footprinting to elucidate PsbP and PsbQ interactions within higher plant Photosystem II, Manjula P. Mummadisetti, Laurie K. Frankel, Henry D. Bellamy, Larry Sallans, Jost S. Goettert, Michal Brylinski, Patrick A. Limbach, and Terry M. Bricker
Crystal structure of a lipoxygenase in complex with substrate: The arachidonic acid-binding site of 8R-lipoxygenase, David B. Neau, Gunes Bender, William E. Boeglin, Sue G. Bartlett, Alan R. Brash, and Marcia E. Newcomer
Genomics of plant abiotic stress tolerance, Dong Ha Oh, Maheshi Dassanayake, Hyewon Hong, Suja George, Seol Ki Paeng, Anna Kropornika, Ray A. Bressan, Sang Yeol Lee, Dae Jin Yun, and Hans J. Bohnert
Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula, Dong Ha Oh, Hyewon Hong, Sang Yeol Lee, Dae Jin Yun, Hans J. Bohnert, and Maheshi Dassanayake
Parental care in the Cuatro Ciénegas cichlid, Herichthys minckleyi (Teleostei: Cichlidae), Ronald G. Oldfield, Kapil Mandrekar, M. Xavier Nieves, Dean A. Hendrickson, Prosanta Chakrabarty, Brook O. Swanson, and Hans A. Hofmann
Synthesis, spectroscopic, and cellular properties of α-pegylated -AB- and AB-types ZnPcs, Benson G. Ongarora, Zehua Zhou, Elizabeth A. Okoth, Igor Kolesnichenko, Kevin M. Smith, and M Graça Vicente
Biogeochemical consequences of an oxygenated intrusion into an anoxic fjord, Svetlana Pakhomova, Hans Fredrik V. Braaten, Evgeniy Yakushev, and Jens Skei
Interannual variability of the Black Sea Proper oxygen and nutrients regime: The role of climatic and anthropogenic forcing, S. Pakhomova, E. Vinogradova, E. Yakushev, A. Zatsepin, G. Shtereva, V. Chasovnikov, and O. Podymov
Diet-induced fatty acid variation in critical tissues of a spawning estuarine fish and consequences for larval fitness, Joshua T. Patterson and Christopher C. Green
Dual roles of an algal farming damselfish as a cultivator and opportunistic browser of an invasive seaweed, Kimberly A. Peyton, Lauren M. Valentino, and Karen P. Maruska
Comparison of infrapatellar and subcutaneous adipose tissue stromal vascular fraction and stromal/stem cells in osteoarthritic subjects, Pedro Pires de Carvalho, Katie M. Hamel, Robert Duarte, Andrew G.S. King, Masudul Haque, Marilyn A. Dietrich, Xiying Wu, Forum Shah, David Burk, Rui L. Reis, et al.
Strong natural selection on juveniles maintains a narrow adult hybrid zone in a broadcast spawner, Carlos Prada and Michael E. Hellberg
Cryptic diversity hides host and habitat specialization in a gorgonian-algal symbiosis, Carlos Prada, Shelby E. McIlroy, Diana M. Beltrán, Daniel J. Valint, Scott A. Ford, Michael E. Hellberg, and Mary Alice Coffroth
Genetic species delineation among branching Caribbean Porites corals, C. Prada, M. B. De Biasse, J. E. Neigel, B. Yednock, J. L. Stake, Z. H. Forsman, I. B. Baums, and M. E. Hellberg
Development and characterization of microsatellite loci for two species of Beringian birds, rock sandpiper (Calidris ptilocnemis) and Pacific wren (Troglodytes pacificus), C.L. Pruett, C. Whelan, A. Ricono, S.L. Lance, T. Glenn, B. Faircloth, and K. Winker
Cdk1 promotes cytokinesis in fission yeast through activation of the septation initiation network, Nicole Rachfall, Alyssa E. Johnson, Sapna Mehta, Jun Song Chen, and Kathleen L. Gould
Developing eThread pipeline using SAGA-pilot abstraction for large-scale structural bioinformatics, Anjani Ragothaman, Sairam Chowdary Boddu, Nayong Kim, Wei Feinstein, Michal Brylinski, Shantenu Jha, and Joohyun Kim
Interactive effects of male and female age on extra-pair paternity in a socially monogamous seabird, A.G. Ramos, S.O. Nunziata, S.L. Lance, C. Rodriguez, B.C. Faircloth, P.A. Gowaty, and H. Drummond
Habitat structure and colony structure constrain extrapair paternity ina colonial bird, A.G. Ramos, S.O. Nunziata, S.L. Lance, C. Rodríguez, B.C. Faircloth, P.A. Gowaty, and H. Drummond
Poor fit to the multispecies coalescent is widely detectable in empirical data, Noah M. Reid, Sarah M. Hird, Jeremy M. Brown, Tara A. Pelletier, John D. McVay, Jordan D. Satler, and Bryan C. Carstens
Effects of biological control on long-term population dynamics: Identifying unexpected outcomes, James R. Reilly and Bret D. Elderd
Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks, M. Réjou-Méchain, H. C. Muller-Landau, M. Detto, S. C. Thomas, T. Le Toan, S. S. Saatchi, J. S. Barreto-Silva, N. A. Bourg, S. Bunyavejchewin, N. Butt, et al.
Artemisia extracts activate PPARγ, promote adipogenesis, and enhance insulin sensitivity in adipose tissue of obese mice, Allison J. Richard, Thomas P. Burris, David Sanchez-Infantes, Yongjun Wang, David M. Ribnicky, and Jacqueline M. Stephens
Artemisia scoparia enhances adipocyte development and endocrine function in vitro and enhances insulin action in vivo, Allison J. Richard, Scott Fuller, Veaceslav Fedorcenco, Robbie Beyl, Thomas P. Burris, Randall Mynatt, David M. Ribnicky, and Jacqueline M. Stephens
The role of JAK-STAT signaling in adipose tissue function, Allison J. Richard and Jacqueline M. Stephens
Specimen collection: An essential tool, L. A. Rocha, A. Aleixo, G. Allen, F. Almeda, C. C. Baldwin, M. V.L. Barclay, J. M. Bates, A. M. Bauer, F. Benzoni, C. M. Berns, et al.
The PsbP domain protein 1 functions in the assembly of lumenal domains in photosystem I, Johnna L. Roose, Laurie K. Frankel, and Terry M. Bricker
Convergent evolution of aquatic foraging in a new genus and species (Rodentia: Muridae) from Sulawesi Island, Indonesia, Kevin C. Rowe, Anang S. Achmadi, and Jacob A. Esselstyn
Spatiotemporal expression of TRPM4 in the mouse cochlea, Mayumi Sakuraba, Junko Murata, Ryoichi Teruyama, Kazusaku Kamiya, Junji Yamaguchi, Hideyuki Okano, Yasuo Uchiyama, and Katsuhisa Ikeda
Role of adipose tissue in the pathogenesis and treatment of metabolic syndrome, David Sanchez-Infantes and Jacqueline M. Stephens
Oncostatin M is produced in adipose tissue and is regulated in conditions of obesity and type 2 diabetes, David Sanchez-Infantes, Ursula A. White, Carrie M. Elks, Ron F. Morrison, Jeffrey M. Gimble, Robert V. Considine, Anthony W. Ferrante, Eric Ravussin, and Jacqueline M. Stephens
Two New Species ofFreziera(Pentaphylacaceae) from Costa Rica, Daniel Santamaría-Aguilar, Alex K. Monro, Quírico Jiménez-Madrigal, and Laura P. Lagomarsino
Group 2 innate lymphoid cells and IL-33 in infant respiratory syncytial virus infection, J. Saravia, D. H. You, J. DeVincenzo, and S. Cormier
Early-life exposure to combustion-derived particulate matter causes pulmonary immunosuppression, J. Saravia, D. You, P. Thevenot, G. I. Lee, B. Shrestha, S. Lomnicki, and S. A. Cormier
Deficiency of the two-pore-domain potassium channel TREK-1 promotes hyperoxia-induced lung injury, Andreas Schwingshackl, Bin Teng, Patrudu Makena, Manik Ghosh, Scott E. Sinclair, Charlean Luellen, Louisa Balasz, Cynthia Rovnaghi, Robert M. Bryan, Eric E. Lloyd, et al.
PFKFB3 regulates oxidative stress homeostasis via its S-glutathionylation in cancer, Minsuh Seo and Yong Hwan Lee
Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes, Joseph R. Shaw, Thomas H. Hampton, Benjamin L. King, Andrew Whitehead, Fernando Galvez, Robert H. Gross, Nathan Keith, Emily Notch, Dawoon Jung, Stephen P. Glaholt, et al.
Environmental control on phytoplankton community structure in the NE Black Sea, V. A. Silkin, L. A. Pautova, S. V. Pakhomova, A. V. Lifanchuk, E. V. Yakushev, and V. K. Chasovnikov
Design, synthesis, and antibacterial properties of dual-ligand inhibitors of acetyl-CoA carboxylase, Molly A. Silvers, Gregory T. Robertson, Carol M. Taylor, and Grover L. Waldrop
Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales, Brian Tilston Smith, Michael G. Harvey, Brant C. Faircloth, Travis C. Glenn, and Robb T. Brumfield
The drivers of tropical speciation, Brian Tilston Smith, John E. McCormack, Andrés M. Cuervo, Michael J. Hickerson, Alexandre Aleixo, Carlos Daniel Cadena, Jorge Pérez-Emán, Curtis W. Burney, Xiaoou Xie, Michael G. Harvey, et al.
A single intramuscular vaccination of mice with the HSV-1 VC2 virus with mutations in the glycoprotein K and the membrane protein UL20 confers full protection against lethal intravaginal challenge with virulent HSV-1 and HSV-2 strains, Brent A. Stanfield, Jacque Stahl, Vladimir N. Chouljenko, Ramesh Subramanian, Anu-Susan Charles, Ahmad A. Saied, Jason D. Walker, and Konstantin G. Kousoulas
Preface, Jacqueline M. Stephens and Matthew J. Brady
The evolution of peafowl and other taxa with ocelli (eyespots): A phylogenomic approach, K. Sun, K.A. Meiklejohn, B.C. Faircloth, T.C. Glenn, E.L. Braun, and R.T. Kimball
Weight gain reveals dramatic increases in skeletal muscle extracellular matrix remodeling, Charmaine S. Tam, Jeffrey D. Covington, Sudip Bajpeyi, Yourka Tchoukalova, David Burk, Darcy L. Johannsen, Cristina M. Zingaretti, Saverio Cinti, and Eric Ravussin
No effect of caloric restriction on salivary cortisol levels in overweight men and women, Charmaine S. Tam, Elizabeth A. Frost, Wenting Xie, Jennifer Rood, Eric Ravussin, and Leanne M. Redman
Copper binding in IscA inhibits iron-sulphur cluster assembly in Escherichia coli, Guoqiang Tan, Zishuo Cheng, Yilin Pang, Aaron P. Landry, Jianghui Li, Jianxin Lu, and Huangen Ding
Fetal baboon sex-specific outcomes in adipocyte differentiation at 0.9 gestation in response to moderate maternal nutrient reduction, Y. D. Tchoukalova, R. Krishnapuram, U. A. White, D. Burk, X. Fang, M. J. Nijland, and P. W. Nathanielsz
Function and Localization of Epithelial Sodium Channels in Vasopressin and Oxytocin Neurons, Ryoichi Teruyama
Species coexistence and the dynamics of phenotypic evolution in adaptive radiation, Joseph A. Tobias, Charlie K. Cornwallis, Elizabeth P. Derryberry, Santiago Claramunt, Robb T. Brumfield, and Nathalie Seddon
The influence of the complex topography and dynamic history of the montane Neotropics on the evolutionary differentiation of a cloud forest bird (Premnoplex brunnescens, Furnariidae), Eugenio Valderrama, Jorge L. Pérez-Emán, Robb T. Brumfield, Andrés M. Cuervo, and Carlos Daniel Cadena
Myo-Inositol and phytate are toxic to Formosan subterranean termites (Isoptera: Rhinotermitidae), Lucas Veillon, Jared Bourgeois, Amanda Leblanc, Gregg Henderson, Brian D. Marx, Syed Muniruzzaman, and Roger A. Laine
Compromised RNA polymerase III complex assembly leads to local alterations of intergenic RNA polymerase II transcription in Saccharomyces cerevisiae, Qing Wang, Chance M. Nowak, Asawari Korde, Dong Ha Oh, Maheshi Dassanayake, and David Donze
Phylotranscriptomic analysis of the origin and early diversification of land plants, Norman J. Wickett, Siavash Mirarab, Nam Nguyen, Tandy Warnow, Eric Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Michael S. Barker, J. Gordon Burleigh, Matthew A. Gitzendanner, et al.
The common marmoset genome provides insight into primate biology and evolution, Kim C. Worley, Wesley C. Warren, Jeffrey Rogers, Devin Locke, Donna M. Muzny, Elaine R. Mardis, George M. Weinstock, Suzette D. Tardif, Kjersti M. Aagaard, Nicoletta Archidiacono, et al.
Tangram: A comprehensive toolbox for mobile element insertion detection, Jiantao Wu, Wan Ping Lee, Alistair Ward, Jerilyn A. Walker, Miriam K. Konkel, Mark A. Batzer, and Gabor T. Marth
Paternally expressed Peg3 controls maternally expressed Zim1 as a trans factor, An Ye, Hongzhi He, and Joomyeong Kim
The Arabidopsis SIAMESE-RELATED cyclin-dependent Kinase Inhibitors SMR5 and SMR7 Regulate the DNA damage checkpoint in response to reactive oxygen species, Dalong Yi, Claire Lessa Alvim Kamei, Toon Cools, Sandy Vanderauwera, Naoki Takahashi, Yoko Okushima, Thomas Eekhout, Kaoru Okamoto Yoshiyama, John Larkin, Hilde Van den Daele, et al.
Neonatal mice failed to induce an effective adaptive immune response to methicillin-resistant Staphylococcus aureus, D. H. You, E. Fitzpatrick, and S. Cormier
Integration of apo-α-phycocyanin into phycobilisomes and its association with FNRLin the absence of the phycocyanin α-subunit lyase (CpcF) in Synechocystis sp. PCC 6803, Pengpeng Zhang, Laurie K. Frankel, and Terry M. Bricker
The induction of lipocalin-2 protein expression in vivo and in vitro, Peng Zhao, Carrie M. Elks, and Jacqueline M. Stephens
Submissions from 2013
Geometric Satake, Springer correspondence and small representations, Pramod N. Achar and Anthony Henderson
Koszul duality and semisimplicity of frobenius, Pramod N. Achar and Simon Riche
Completions of grothendieck groups, Pramod N. Achar and Catharina Stroppel
Phylogeny, diversity, and biogeography of Southeast Asian spiny rats (Maxomys), Anang S. Achmadi, Jacob A. Esselstyn, Kevin C. Rowe, Ibnu Maryanto, and M. T. Abdullah
INFECTIVITY & TRANSMISSION: ALCOHOL'S IMPACT ON INFECTIVITY AND VIRAL SHEDDING, A. M. Amedee, G. J. Bagby, R. S. Veazey, J. Dufour, S. Cormier, L. R. LaMotte, P. E. Molina, and S. Nelson
Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation, Aaron M. Appel, John E. Bercaw, Andrew B. Bocarsly, Holger Dobbek, Daniel L. Dubois, Michel Dupuis, James G. Ferry, Etsuko Fujita, Russ Hille, Paul J.A. Kenis, et al.
Research and teaching with the AFTOL SBD: an informatics resource for fungal subcellular and biochemical data, T K. Arun Kumar, Meredith Blackwell, Peter M. Letcher, Robert W. Roberson, and David J. McLaughlin
Vitronectin inhibits efferocytosis through interactions with apoptotic cells as well as with macrophages, Hong Beom Bae, Jean Marc Tadie, Shaoning Jiang, Dae Won Park, Celeste P. Bell, Lawrence C. Thompson, Cynthia B. Peterson, Victor J. Thannickal, Edward Abraham, and Jaroslaw W. Zmijewski
Habitat filtering across tree life stages in tropical forest communities, C. A. Baldeck, K. E. Harms, J. B. Yavitt, R. John, B. L. Turner, R. Valencia, H. Navarrete, S. Bunyavejchewin, S. Kiratiprayoon, A. Yaacob, et al.
Soil resources and topography shape local tree community structure in tropical forests, Claire A. Baldeck, Kyle E. Harms, Joseph B. Yavitt, Robert John, Benjamin L. Turner, Renato Valencia, Hugo Navarrete, Stuart J. Davies, George B. Chuyong, David Kenfack, et al.
The conservation status of the world's reptiles, Monika Böhm, Ben Collen, Jonathan E.M. Baillie, Philip Bowles, Janice Chanson, Neil Cox, Geoffrey Hammerson, Michael Hoffmann, Suzanne R. Livingstone, Mala Ram, et al.
SIN-dependent phosphoinhibition of formin multimerization controls fission yeast cytokinesis, K. Adam Bohnert, Agnieszka P. Grzegorzewska, Alaina H. Willet, Craig W. Vander Kooi, David R. Kovar, and Kathleen L. Gould
Formin-based control of the actin cytoskeleton during cytokinesis, K. Adam Bohnert, Alaina H. Willet, David R. Kovar, and Kathleen L. Gould
Metabolic preconditioning of mammalian cells: Mimetic agents for hypoxia lack fidelity in promoting phosphorylation of pyruvate dehydrogenase, Apurva Borcar, Michael A. Menze, Mehmet Toner, and Steven C. Hand
Unrecognized coral species diversity masks differences in functional ecology, Jennifer N. Boulay, Michael E. Hellberg, Jorge Cortés, and Iliana B. Baums
Lead uptake in diverse plant families: A study applying X-ray absorption near edge spectroscopy, Gudrun L. Bovenkamp, Alexander Prange, Wolfgang Schumacher, Kyungmin Ham, Aaron P. Smith, and Josef Hormes
Characterization of microsatellite loci for a threatened species, the King Rail, Rallus elegans, using a next-generation sequencing protocol, Carol L. Brackett, James M. Maley, Robb T. Brumfield, and Susan B. McRae
Biotechnology for mechanisms that counteract salt stress in extremophile species: A genome-based view, Ray A. Bressan, Hyeong Cheol Park, Francesco Orsini, Dong ha Oh, Maheshi Dassanayake, Gunsu Inan, Dae Jin Yun, Hans J. Bohnert, and Albino Maggio
The PsbP family of proteins, Terry M. Bricker, Johnna L. Roose, Pengpeng Zhang, and Laurie K. Frankel
The three-dimensional structure of the biotin carboxylase-biotin carboxyl carrier protein complex of E. coli acetyl-CoA carboxylase, Tyler C. Broussard, Matthew J. Kobe, Svetlana Pakhomova, David B. Neau, Amanda E. Price, Tyler S. Champion, and Grover L. Waldrop
Complex formation and regulation of Escherichia coli acetyl-CoA carboxylase, Tyler C. Broussard, Amanda E. Price, Susan M. Laborde, and Grover L. Waldrop
Enthalpic switch-points and temperature dependencies of DNA binding and nucleotide incorporation by Pol i DNA polymerases, Hiromi S. Brown and Vince J. Licata
Evolutionary processes of diversification in a model island archipelago, Rafe M. Brown, Cameron D. Siler, Carl H. Oliveros, Jacob A. Esselstyn, Arvin C. Diesmos, Peter A. Hosner, Charles W. Linkem, Anthony J. Barley, Jamie R. Oaks, Marites B. Sanguila, et al.
A capillary electrophoretic assay for acetyl coenzyme A carboxylase, Sherrisse K. Bryant, Grover L. Waldrop, and S Douglass Gilman
EVolver: An optimization engine for evolving protein sequences to stabilize the respective structures, Michal Brylinski
Exploring the " dark matter" of a mammalian proteome by protein structure and function modeling, Michal Brylinski
Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction, Michal Brylinski
The utility of artificially evolved sequences in protein threading and fold recognition, Michal Brylinski
Unleashing the power of meta-threading for evolution/structure-based function inference of proteins, Michal Brylinski
EFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands, Michal Brylinski and Wei P. Feinstein
GenSeq: An updated nomenclature and ranking for genetic sequences from type and non-type sources, Prosanta Chakrabarty, Melanie Warren, Lawrence M. Page, and Carole C. Baldwin
Non-Additive Effects on Decomposition from Mixing Litter of the Invasive Mikania micrantha H.B.K. with Native Plants, Bao Ming Chen, Shao Lin Peng, Carla M. D'Antonio, Dai Jiang Li, and Wen Tao Ren
The amino terminus of herpes simplex virus 1 glycoprotein K is required for virion entry via the paired immunoglobulin-like type-2 receptor alpha, Sona Chowdhury, Vladimir N. Chouljenko, Misagh Naderi, and Konstantin G. Kousoulas
Phylogeny and classification of automolus foliage-gleaners and allies (furnariidae), Santiago Claramunt, Elizabeth P. Derryberry, Carlos Daniel Cade Na, Andrés M. Cuervo, Camilo Sanín, and Robb T. Brumfield
A Comparison of 100 Human Genes Using an Alu Element-Based Instability Model, George W. Cook, Miriam K. Konkel, Jerilyn A. Walker, Matthew G. Bourgeois, Mitchell L. Fullerton, John T. Fussell, Heath D. Herbold, and Mark A. Batzer
Corticosterone mediated costs of reproduction link current to future breeding, Glenn T. Crossin, Richard A. Phillips, Christine R. Lattin, L. Michael Romero, and Tony D. Williams
Chemical attraction of Dermacentor variabilis ticks parasitic to Peromyscus leucopus based on host body mass and sex, Tad Dallas and Stephanie Foré
Phylogeny and comparative phylogeography of Sclerurus (Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists, Fernando M. D'Horta, Andrés M. Cuervo, Camila C. Ribas, Robb T. Brumfield, and Cristina Y. Miyaki
DNA double-strand break repair at--15{degrees}C, Markus Dieser, John R. Battista, and Brent C. Christner