Submissions from 2013
Profluorogenic reductase substrate for rapid, selective, and sensitive visualization and detection of human cancer cells that overexpress NQO1, William C. Silvers, Bijeta Prasai, David H. Burk, Matthew L. Brown, and Robin L. McCarley
Alkane hydroxylase gene (alkB) phylotype composition and diversity in northern Gulf of Mexico bacterioplankton, Conor B. Smith, Bradley B. Tolar, James T. Hollibaugh, and Gary M. King
H3K4 methyltransferase Set1 is involved in maintenance of ergosterol homeostasis and resistance to Brefeldin A, Paul F. South, Kayla M. Harmeyer, Nina D. Serratore, and Scott D. Briggs
A new hero emerges: Another exceptional mammalian spine and its potential adaptive significance, William T. Stanley, Lynn W. Robbins, Jean M. Malekani, Sylvestre Gambalemoke Mbalitini, Dudu Akaibe Migurimu, Jean Claude Mukinzi, Jan Hulselmans, Vanya Prévot, Erik Verheyen, Rainer Hutterer, et al.
Nitric oxide production and the expression of two nitric oxide synthases in the avian retina, Merve Tekmen-Clark and Evanna Gleason
Chronic alcohol induces M2 polarization enhancing pulmonary disease caused by exposure to particulate air pollution, Paul Thevenot, Jordy Saravia, Joseph Giaimo, Kyle I. Happel, Tammy R. Dugas, and Stephania A. Cormier
Radical-containing ultrafine particulate matter initiates epithelial-to-mesenchymal transitions in airway epithelial cells, Paul T. Thevenot, Jordy Saravia, Nili Jin, Joseph D. Giaimo, Regina E. Chustz, Sarah Mahne, Matthew A. Kelley, Valeria Y. Hebert, Barry Dellinger, Tammy R. Dugas, et al.
DNA-binding motif and target genes of the imprinted transcription factor PEG3, Michelle M. Thiaville, Jennifer M. Huang, Hana Kim, Muhammad B. Ekram, Tae Young Roh, and Joomyeong Kim
Identification of an Evolutionarily Conserved Cis-Regulatory Element Controlling the Peg3 Imprinted Domain, Michelle M. Thiaville, Hana Kim, Wesley D. Frey, and Joomyeong Kim
The direct and indirect effects of home clutter on parenting, Carly M. Thornock, Larry J. Nelson, Clyde C. Robinson, and Craig H. Hart
An analysis of thaumarchaeota populations from the northern Gulf of Mexico, Bradley B. Tolar, Gary M. King, and James T. Hollibaugh
Seasonal changes and treatment effects on soil inorganic nutrients following a decade of fertilizer addition in a lowland tropical forest, Benjamin L. Turner, Joseph B. Yavitt, Kyle E. Harms, Milton N. Garcia, Tania E. Romero, and S. Joseph Wright
Scheffersomyces cryptocercus: a new xylose-fermenting yeast associated with the gut of wood roaches and new combinations in the Sugiyamaella yeast clade, Hector Urbina, Robert Frank, and Meredith Blackwell
Natural variants of photosystem II subunit D1 tune photochemical fitness to solar intensity, David J. Vinyard, Javier Gimpel, Gennady M. Ananyev, Mario A. Cornejo, Susan S. Golden, Stephen P. Mayfield, and G. Charles Dismukes
Thermodynamically accurate modeling of the catalytic cycle of photosynthetic oxygen evolution: A mathematical solution to asymmetric Markov chains, David J. Vinyard, Chase E. Zachary, Gennady Ananyev, and G. Charles Dismukes
Maternal exposure to combustion generated PM inhibits pulmonary Th1 maturation and concomitantly enhances postnatal asthma development in offspring, Pingli Wang, Dahui You, Jordy Saravia, Huahao Shen, and Stephania A. Cormier
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations, David J. Witherspoon, Yuhua Zhang, Jinchuan Xing, W. Scott Watkins, Hongseok Ha, Mark A. Batzer, and Lynn B. Jorde
Estimation of the diffusion rate and crossing probability for biased edge movement between two different types of habitat, Ming Qing Xiao, John D. Reeve, Dashun Xu, and James T. Cronin
IL-4Rα on CD4+ T cells plays a pathogenic role in respiratory syncytial virus reinfection in mice infected initially as neonates, Dahui You, Nico Marr, Jordy Saravia, Bishwas Shrestha, Greg I. Lee, Stuart E. Turvey, Frank Brombacher, De'broski R. Herbert, and Stephania A. Cormier
Requirement of vesicle-associated membrane protein 721 and 722 for sustained growth during immune responses in Arabidopsis., Hye Sup Yun, Mark Kwaaitaal, Naohiro Kato, Changhyun Yi, Sohyeon Park, Masa H. Sato, Paul Schulze-Lefert, and Chian Kwon
Identification of STAT target genes in adipocytes, Peng Zhao and Jacqueline M. Stephens
STAT1, NF-κB and ERKs play a role in the induction of lipocalin-2 expression in adipocytes, Peng Zhao and Jacqueline Marie Stephens
Submissions from 2012
Costs and benefits of jasmonic acid induced responses in soybean, A. K. Accamando and J. T. Cronin
Purity and decomposition theorems for staggered sheaves, Pramod N. Achar and David Treumann
TsHKT1;2, a HKT1 homolog from the extremophile arabidopsis relative Thellungiella salsuginea, shows K + specificity in the presence of NaCl, Zahir Ali, Hyeong Cheol Park, Akhtar Ali, Dong Ha Oh, Rashid Aman, Anna Kropornicka, Hyewon Hong, Wonkyun Choi, Woo Sik Chung, Woe Yeon Kim, et al.
An integrated map of genetic variation from 1,092 human genomes, David M. Altshuler, Richard M. Durbin, Gonçalo R. Abecasis, David R. Bentley, Aravinda Chakravarti, Andrew G. Clark, Peter Donnelly, Evan E. Eichler, Paul Flicek, Stacey B. Gabriel, et al.
Genomic impact of eukaryotic transposable elements, Irina R. Arkhipova, Mark A. Batzer, Juergen Brosius, Cédric Feschotte, John V. Moran, Jürgen Schmitz, and Jerzy Jurka
Vitronectin inhibits neutrophil apoptosis through activation of integrin-associated signaling pathways, Hong Beom Bae, Jaroslaw W. Zmijewski, Jessy S. Deshane, Degui Zhi, Lawrence C. Thompson, Cynthia B. Peterson, David D. Chaplin, and Edward Abraham
No gene flow across the Eastern Pacific Barrier in the reef-building coral Porites lobata, Iliana B. Baums, Jennifer N. Boulay, Nicholas R. Polato, and Michael E. Hellberg
Genetic and morphological data support placement of Myrmotherula gularis (Spix) in the monotypic genus Rhopias Cabanis and Heine (Aves: Passeriformes: Thamnophilidae), Ricardo Belmonte-Lopes, Gustavo A. Bravo, Marcos R. Bornschein, Giovanni N. Maurício, Marcio R. Pie, and Robb T. Brumfield
Cytokinesis-Based Constraints on Polarized Cell Growth in Fission Yeast, K. Adam Bohnert and Kathleen L. Gould
Physiological biomarkers of hypoxic stress in red swamp crayfish Procambarus clarkii from field and laboratory experiments, Christopher P. Bonvillain, D Allen Rutherford, William E. Kelso, and Christopher C. Green
Multiple deletions reveal the essentiality of the DedA membrane protein family in Escherichia coli, Lisa A. Boughner and William T. Doerrler
Keystone resource (Ficus) chemistry explains lick visitation by frugivorous bats, Adriana Bravo, Kyle E. Harms, and Louise H. Emmons
Isleria, a new genus of antwren (Aves: Passeriformes: Thamnophilidae), Gustavo A. Bravo, R. Terry Chesser, and Robb T. Brumfield
DNA sequence data reveal a subfamily-level divergence within Thamnophilidae (Ayes: Passeriformes), Gustavo A. Bravo, J. V. Remsen Jr., Bret M. Whitney, and Robb T. Brumfield
The extrinsic proteins of Photosystem II, Terry M. Bricker, Johnna L. Roose, Robert D. Fagerlund, Laurie K. Frankel, and Julian J. Eaton-Rye
Embryonic development and metabolic costs in Gulf killifish Fundulus grandis exposed to varying environmental salinities, Charles A. Brown, Fernando Galvez, and Christopher C. Green
Embryonic development and metabolic costs in Gulf killifish Fundulus grandis exposed to varying environmental salinities, Charles A. Brown, Fernando Galvez, and Christopher C. Green
Perspectives in ornithology: Inferring the origins of lowland neotropical birds, Robb T. Brumfield
eThread: A Highly Optimized Machine Learning-Based Approach to Meta-Threading and the Modeling of Protein Tertiary Structures, Michal Brylinski and Daswanth Lingam
Tools for the identification of bioactives impacting the metabolic syndrome: Screening of a botanical extract library using subcutaneous and visceral human adipose-derived stem cell-based assays, Benjamin M. Buehrer, David J. Duffin, Y. Renee Lea-Currie, David Ribnicky, Ilya Raskin, Jacqueline M. Stephens, William T. Cefalu, and Jeffrey M. Gimble
Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons, Lucia Carbone, R. Alan Harris, Alan R. Mootnick, Aleksandar Milosavljevic, David I.K. Martin, Mariano Rocchi, Oronzo Capozzi, Nicoletta Archidiacono, Miriam K. Konkel, Jerilyn A. Walker, et al.
Molecular basis of the fructose-2,6-bisphosphatase reaction of PFKFB3: Transition state and the C-terminal function, Michael C. Cavalier, Song Gun Kim, David Neau, and Yong Hwan Lee
Mechanistic Insights into Validoxylamine A 7'-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex, Michael C. Cavalier, Young Sun Yim, Shumpei Asamizu, David Neau, Khaled H. Almabruk, Taifo Mahmud, and Yong Hwan Lee
A Guide to Academia: Getting Into and Surviving Grad School, Postdocs, and Research Job, Prosanta Chakrabarty
The First Record of a Trans-Oceanic Sister-Group Relationship between Obligate Vertebrate Troglobites, Prosanta Chakrabarty, Matthew P. Davis, and John S. Sparks
SpeciesMap: A web-based application for visualizing the overlap of distributions and pollution events, with a list of fishes put at risk by the 2010 Gulf of Mexico oil spill, Prosanta Chakrabarty, Calvin Lam, Jori Hardman, Jacob Aaronson, Parker H. House, and Daniel A. Janies
Interleukin-12p40 modulates human metapneumovirus-induced pulmonary disease in an acute mouse model of infection, Krishnendu Chakraborty, Zehua Zhou, Nobuko Wakamatsu, and Antonieta Guerrero-Plata
Use of late embryogenesis proteins to engineer desiccation tolerance in mammalian cells, Nilay Chakraborty, Shumin Li, Apurva Borcar, Steven C. Hand, and Mehmet Toner
Trehalose transporter from African chironomid larvae improves desiccation tolerance of Chinese hamster ovary cells, Nilay Chakraborty, Michael A. Menze, Heidi Elmoazzen, Halong Vu, Martin L. Yarmush, Steven C. Hand, and Mehmet Toner
Stimulation of Escherichia coli DNA damage inducible DNA helicase DinG by the single-stranded DNA binding protein SSB, Zishuo Cheng, Aimee Caillet, Binbin Ren, and Huangen Ding
Genomic insights into adaptation to high-altitude environments, Z. A. Cheviron and R. T. Brumfield
Functional hierarchy of herpes simplex virus 1 viral glycoproteins in cytoplasmic virion envelopment and egress, Dmitry V. Chouljenko, In-Joong Kim, Vladimir N. Chouljenko, Ramesh Subramanian, Jason D. Walker, and Konstantin G. Kousoulas
Amino acid differences in glycoproteins B (gB), C (gC), H (gH) and L (gL) are associated with enhanced herpes simplex virus type-1 (McKrae) entry via the paired immunoglobulin-like type-2 receptor α, Sona Chowdhury, Misagh Naderi, Vladimir N. Chouljenko, Jason D. Walker, and Konstantin G. Kousoulas
Cost analysis of establishing a relationship between a surgical program in the US and Vietnam, Quyen D. Chu, Thu Nguyen, Phuong Nguyen, and Hung S. Ho
Ecological Opportunity and Diversification in a Continental Radiation of Birds: Climbing Adaptations and Cladogenesis in the Furnariidae, Santiago Claramunt, Elizabeth P. Derryberry, Robb T. Brumfield, and J. V. Remsen Jr.
High dispersal ability inhibits speciation in a continental radiation of passerine birds, Santiago Claramunt, Elizabeth P. Derryberry, Jr V. Remsen, and Robb T. Brumfield
uIn utero exposure to EPFR-containing PM inhibits pulmonary Th1 maturation and enhances adult asthma development in mice, S. Cormier, P. L. Wang, and D. H. You
Habitat and fire heterogeneity explain the co-occurrence of congeneric resprouter and reseeder Hypericum spp. along a Florida pine savanna ecocline, Raelene M. Crandall and William J. Platt
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs, Nicholas G. Crawford, Brant C. Faircloth, John E. McCormack, Robb T. Brumfield, Kevin Winker, and Travis C. Glenn
Modeling the influence of Peromyscus leucopus body mass, sex, and habitat on immature Dermacentor variabilis burden, Tad A. Dallas, Stephanie A. Foré, and Hyun Joo Kim
Resource-based habitat associations in a neotropical liana community, James W. Dalling, Stefan A. Schnitzer, Claire Baldeck, Kyle E. Harms, Robert John, Scott A. Mangan, Elena Lobo, Joseph B. Yavitt, and Stephen P. Hubbell
The scope of things to come: New paradigms in biotechnology, Maheshi Dassanayake, Dong Ha Oh, Dae Jin Yun, Ray A. Bressan, John M. Cheeseman, and J. Hans Bohnert
A herpes simplex virus 1 (McKrae) mutant lacking the glycoprotein K gene is unable to infect via neuronal axons and egress from neuronal cell bodies, Andrew T. David, Ahmad Saied, Anu Charles, Ramesh Subramanian, Vladimir N. Chouljenko, and Konstantin G. Kousoulas
Correlated evolution of beak morphology and song in the neotropical woodcreeper radiation, Elizabeth Perrault Derryberry, Nathalie Seddon, Santiago Claramunt, Joseph Andrew Tobias, Adam Baker, Alexandre Aleixo, and Robb Thomas Brumfield
E4orf1 improves lipid and glucose metabolism in hepatocytes: a template to improve steatosis & hyperglycemia, Emily J. Dhurandhar, Rashmi Krishnapuram, Vijay Hegde, Olga Dubuisson, Rongya Tao, X Charlie Dong, Jianping Ye, and Nikhil V. Dhurandhar
αvβ3 integrin crystal structures and their functional implications, Xianchi Dong, Li Zhi Mi, Jianghai Zhu, Wei Wang, Ping Hu, Bing Hao Luo, and Timothy A. Springer
Extra-transcriptional functions of RNA Polymerase III complexes: TFIIIC as a potential global chromatin bookmark, David Donze
Structure of a calcium-dependent 11R-lipoxygenase suggests a mechanism for Ca2+ regulation, Priit Eek, Reet Järving, Ivar Järving, Nathaniel C. Gilbert, Marcia E. Newcomer, and Nigulas Samel
Retrotransposons as a major source of epigenetic variations in the mammalian genome, Muhammad B. Ekram, Keunsoo Kang, Hana Kim, and Joomyeong Kim
Reconciling molecules and morphology: molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria), Ron I. Eytan, Philip A. Hastings, Barbara R. Holland, and Michael E. Hellberg
Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels, Brant C. Faircloth and Travis C. Glenn
Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales, Brant C. Faircloth, John E. McCormack, Nicholas G. Crawford, Michael G. Harvey, Robb T. Brumfield, and Travis C. Glenn
Social information changes the brain, Russell D. Fernald and Karen P. Maruska
Controlling a master switch of adipocyte development and insulin sensitivity: Covalent modifications of PPARγ, Z. Elizabeth Floyd and Jacqueline M. Stephens
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia, Jonathan J. Fong, Jeremy M. Brown, Matthew K. Fujita, and Bastien Boussau
Identification of oxidized amino acid residues in the vicinity of the Mn 4CaO 5 cluster of photosystem II: Implications for the identification of oxygen channels within the photosystem, Laurie K. Frankel, Larry Sallans, Patrick A. Limbach, and Terry M. Bricker
Overview: structural biology of integrins, Guanyuan Fu, Wei Wang, and Bing-Hao Luo
Pathogen persistence in the environment and insect-baculovirus interactions: Disease-density thresholds, epidemic burnout, and insect outbreaks, Emma Fuller, Bret D. Elderd, and Greg Dwyer
Small-scale variation in fuel loads differentially affects two co-dominant bunchgrasses in a species-rich pine savanna, Paul R. Gagnon, Kyle E. Harms, William J. Platt, Heather A. Passmore, and Jonathan A. Myers
Conversion of human 5-lipoxygenase to a 15-lipoxygenase by a point mutation to mimic phosphorylation at Serine-663, Nathaniel C. Gilbert, Zhe Rui, David B. Neau, Maria T. Waight, Sue G. Bartlett, William E. Boeglin, Alan R. Brash, and Marcia E. Newcomer
The influences of metabotropic receptor activation on cellular signaling and synaptic function in amacrine cells, Evanna Gleason
Reproduction in Lygisaurus curtus (Scincidae) from Papua New Guinea, Stephen R. Goldberg and Christopher C. Austin
Food deprivation explains effects of mouthbrooding on ovaries and steroid hormones, but not brain neuropeptide and receptor mRNAs, in an African cichlid fish, Brian P. Grone, Russ E. Carpenter, Malinda Lee, Karen P. Maruska, and Russell D. Fernald
Evidence that thaxtomin C is a pathogenicity determinant of Streptomyces ipomoeae, the causative agent of streptomyces soil rot disease of sweet potato, Dongli Guan, Brenda L. Grau, Christopher A. Clark, Carol M. Taylor, Rosemary Loria, and Gregg S. Pettis
Improving the detection of fungi in eosinophilic mucin: Seeing what we could not see before, Canting Guo, Saied Ghadersohi, Gail M. Kephart, Roger A. Laine, David A. Sherris, Hirohita Kita, and Jens U. Ponikau
Silencing of host genes directed by virus-derived short interfering RNAs in Caenorhabditis elegans, Xunyang Guo, Wan Xiang Li, and Rui Lu
Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae), Natalia Gutierrez-Pinto, Andres M. Cuervo, Jhonathan Miranda, Jorge L. Perez-Eman, Robb T. Brumfield, and Carlos Daniel Cadena
GABA is excitatory in adult vasopressinergic neuroendocrine cells, Juhee Haam, Ion R. Popescu, Linda A. Morton, Katalin C. Halmos, Ryoichi Teruyama, Yoichi Ueta, and Jeffrey G. Tasker
Successional changes in plant resistance and tolerance to herbivory, Alyssa S. Hakes and James T. Cronin
The tegula tango: A coevolutionary dance of interacting, positively selected sperm and egg proteins, Michael E. Hellberg, Alice B. Dennis, Patricia Arbour-Reily, Jan E. Aagaard, and Willie J. Swanson
TFIIIC localizes budding yeast ETC sites to the nuclear periphery, Shin Ichiro Hiraga, Sotirios Botsios, David Donze, and Anne D. Donaldson
AN INTEGRATIVE APPROACH TO SPECIES-LEVEL SYSTEMATICS REVEALS THE DEPTH OF DIVERSIFICATION IN AN ANDEAN THAMNOPHILID, THE LONG-TAILED ANTBIRD, Morton L. Isler, Andres M. Cuervo, Gustavo A. Bravo, and Robb T. Brumfield
From logs to landscapes: Determining the scale of ecological processes affecting the incidence of a saproxylic beetle, Heather B. Jackson, Kristen A. Baum, and James T. Cronin
Inferring the evolutionary history of divergence despite gene flow in a lizard species, Scincella lateralis (Scincidae), composed of cryptic lineages, Nathan D. Jackson and Christopher C. Austin
Slow amyloid nucleation via α-helix-rich oligomeric intermediates in short polyglutamine-containing huntingtin fragments, Murali Jayaraman, Ravindra Kodali, Bankanidhi Sahoo, Ashwani K. Thakur, Anand Mayasundari, Rakesh Mishra, Cynthia B. Peterson, and Ronald Wetzel
Fission yeast Dma1 requires RING domain dimerization for its ubiquitin ligase activity and mitotic checkpoint function, Alyssa E. Johnson, Scott E. Collier, Melanie D. Ohi, and Kathleen L. Gould
Polar opposites: Fine-tuning cytokinesis through SIN asymmetry, Alyssa E. Johnson, Dannel Mccollum, and Kathleen L. Gould
Limited potential for adaptation to climate change in a broadly distributed marine crustacean, Morgan W. Kelly, Eric Sanford, and Richard K. Grosberg