Submissions from 2008
Solitary-functional play and solitary-pretend play: Another look at the construct of solitary-active behavior using playground observations, Larry J. Nelson, Craig H. Hart, and Cortney A. Evans
Weak competition among tropical tree seedlings: Implications for species coexistence, C. E.Timothy Paine, Kyle E. Harms, Stefan A. Schnitzer, and Walter P. Carson
Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis, Svetlana Pakhomova, Sue G. Bartlett, Alexandria Augustus, Tomohisa Kuzuyama, and Marcia E. Newcomer
Are functional traits good predictors of demographic rates? Evidence from five neotropical forests, L. Poorter, S. J. Wright, H. Paz, D. D. Ackerly, R. Condit, G. Ibarra-Manríquez, K. E. Harms, J. C. Licona, M. Martínez-Ramos, S. J. Mazer, et al.
Newly discovered sister lineage sheds light on early ant evolution, Christian Rabeling, Jeremy M. Brown, and Manfred Verhaagh
Diffusion models for animals in complex landscapes: Incorporating heterogeneity among substrates, individuals and edge behaviours, John D. Reeve, James T. Cronin, and Kyle J. Haynes
Nitric oxide-induced bacteriostasis and modification of iron-sulphur proteins in Escherichia coli, Binbin Ren, Nianhui Zhang, Juanjuan Yang, and Huangen Ding
Metabolically favorable remodeling of human adipose tissue by human adenovirus type 36, Pamela M. Rogers, Nazar Mashtalir, Miloni A. Rathod, Olga Dubuisson, Zhong Wang, Kumar Dasuri, Scott Babin, and Alok Gupta
The Psb27 protein facilitates manganese cluster assembly in photosystem II, Johnna L. Roose and Himadri B. Pakrasi
Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis, Faye M. Rosin, Naohide Watanabe, Jean Luc Cacas, Naohiro Kato, Juana M. Arroyo, Yuda Fang, Bruce May, Matthew Vaughn, Joseph Simorowski, Umamaheswari Ramu, et al.
Monitoring the invasion of Phragmites australis in coastal marshes of Louisiana, USA, using multi-source remote sensing data, Pablo H. Rosso, James T. Cronin, and Richard D. Stevens
Craft-based IGERT experiment in graduate macromolecular studies, Paul S. Russo, Kerry M. Dooley, Vince J. Licata, and Eugene Kennedy
A deletion mutant of vitronectin lacking the somatomedin B domain exhibits residual plasminogen activator inhibitor-1-binding activity, Christine R. Schar, Grant E. Blouse, Kenneth H. Minor, and Cynthia B. Peterson
Characterization of a site on PAI-1 that binds to vitronectin outside of the somatomedin B domain, Christine R. Schar, Jan K. Jensen, Anni Christensen, Grant E. Blouse, Peter A. Andreasen, and Cynthia B. Peterson
Microsatellite markers for eastern hemlock (Tsuga canadensis), BRIAN M. SHAMBLIN, BRANT C. FAIRCLOTH, SEDLEY A. JOSSERAND, C. DANA NELSON, and CAMPBELL J. NAIRN
TFIIIC binding sites function as both heterochromatin barriers and chromatin insulators in Saccharomyces cerevisiae, Tiffany A. Simms, Sandra L. Dugas, Jason C. Gremillion, Megan E. Ibos, M. Nicole Dandurand, Tasha T. Toliver, Daniel J. Edwards, and David Donze
Association and distribution of the ciliate Orchitophrya stellarum with asteriid sea stars on the west coast of North America, William B. Stickle and Eugene N. Kozloff
Yeasts isolated from plant-associated beetles and other insects: seven novel Candida species near Candida albicans, Sung-Oui Suh, Nhu H. Nguyen, and Meredith Blackwell
Central blockade of oxytocin receptors during mid-late gestation reduces amplitude of slow afterhyperpolarization in supraoptic oxytocin neurons, R. Teruyama, D. L. Lipschitz, L. Wang, G. R. Ramoz, W. R. Crowley, S. L. Bealer, and W. E. Armstrong
Temperature sensitivity and cell division defects in an Escherichia coli strain with mutations in yghB and yqjA, encoding related and conserved inner membrane proteins, Kandi Thompkins, Ballari Chattopadhyay, Ying Xiao, Margaret C. Henk, and William T. Doerrler
Electrogenerated chemiluminescence of 9,10-diphenylanthracene, rubrene, and anthracene in fluorinated aromatic solvents, David J. Vinyard, Shujun Su, and Mark M. Richter
Sediment from Hurricane Katrina: Potential to Produce Pulmonary Dysfunction in Mice, K. Wang, D. You, S. Balakrishna, M. Ripple, T. Ahlert, B. Fahmy, D. Becnel, M. Daly, W. Subra, J. S. McElduff, et al.
Genome analysis of the platypus reveals unique signatures of evolution (Nature (2008) 453, (175-183)), Wesley C. Warren, La Deana W. Hillier, Jennifer A. Marshall Graves, Ewan Birney, Chris P. Ponting, Frank Grützner, Katherine Belov, Webb Miller, Laura Clarke, Asif T. Chinwalla, et al.
Genome analysis of the platypus reveals unique signatures of evolution, Wesley C. Warren, La Deana W. Hillier, Jennifer A. Marshall Graves, Ewan Birney, Chris P. Ponting, Frank Grützner, Katherine Belov, Webb Miller, Laura Clarke, Asif T. Chinwalla, et al.
Neuropoietin attenuates adipogenesis and induces insulin resistance in adipocytes, Ursula A. White, William C. Stewart, Randall L. Mynatt, and Jacqueline M. Stephens
Origin of the eastern brownsnake, Pseudonaja textilis (Duméril, Bibron and Duméril) (Serpentes: Elapidae: Hydrophiinae) in New Guinea: evidence of multiple dispersals from Australia, and comments on the status of Pseudonaja textilis pughi Hoser 2003, David J. Williams, Mark O'Shea, Roland L. Daguerre, Catharine E. Pook, Wolfgang Wüster, Christopher J. Hayden, John D. Mcvay, Owen Paiva, Teatu Lohi Matainaho, Kenneth D. Winkel, et al.
Is caloric restriction associated with development of eating-disorder symptoms? Results from the CALERIE trial, Donald A. Williamson, Corby K. Martin, Stephen D. Anton, Emily York-Crowe, Hongmei Han, Leanne Redman, and Eric Ravussin
A multilocus molecular phylogeny of the parrots (Psittaciformes): Support for a gondwanan origin during the cretaceous, Timothy F. Wright, Erin E. Schirtzinger, Tania Matsumoto, Jessica R. Eberhard, Gary R. Graves, Juan J. Sanchez, Sara Capelli, Heinrich Müller, Julia Scharpegge, Geoffrey K. Chambers, et al.
Vertical hydrochemical structure of the black sea, E. V. Yakushev, V. K. Chasovnikov, J. W. Murray, S. V. Pakhomova, O. I. Podymov, and P. A. Stunzhas
The effects of simultaneous RNAi suppression of PsbO and PsbP protein expression in photosystem II of Arabidopsis, Xiaoping Yi, Stefan R. Hargett, Laurie K. Frankel, and Terry M. Bricker
Identification and characterisation of a novel inorganic carbon acquisition gene, CIA7, from an insertional mutant of Chlamydomonas reinhardtii, Ruby A. Ynalvez and James V. Moroney
Identification and characterization of two closely related β-carbonic anhydrases from Chlamydomonas reinhardtii, Ruby A. Ynalvez, Ying Xiao, Ayana S. Ward, Khrishen Cunnusamy, and James V. Moroney
Inchoate CD8+ T cell responses in neonatal mice permit influenza-induced persistent pulmonary dysfunction, Dahui You, Michael Ripple, Shrilatha Balakrishna, Dana Troxclair, Dane Sandquist, Liren Ding, Terry A. Ahlert, and Stephania A. Cormier
Identification of two genes, sll0804 and slr1306, as putative components of the CO2-concentrating mechanism in the cyanobacterium Synechocystis sp. strain PCC 6803, Shulu Zhang, Kevin W. Spann, Laurie K. Frankel, James V. Moroney, and Terry M. Bricker
Cellular uptake and lysosomal delivery of galactocerebrosidase tagged with the HIV Tat protein transduction domain, Xian Yang Zhang, Annie Dinh, James Cronin, Su Chen Li, and Jakob Reiser
Structure of a Complete Integrin Ectodomain in a Physiologic Resting State and Activation and Deactivation by Applied Forces, Jianghai Zhu, Bing Hao Luo, Tsan Xiao, Chengzhong Zhang, Noritaka Nishida, and Timothy A. Springer
Submissions from 2007
Supports unipotents de faisceaux caractères, Pramod N. Achar and Anne Marie Aubert
Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar, Mark A. Batzer, Prescott L. Deininger, Jerzy Jurka, and John V. Moran
The modulation of STAT5A/GR complexes during fat cell differentiation and in mature adipocytes, James E. Baugh, Z. Elizabeth Floyd, and Jacqueline M. Stephens
The distributions of howling monkeys (Alouatta pigra and A. palliata) in southeastern Mexico and Central America, Amrei Baumgarten and G Bruce Williamson
Bayesian change-point analyses in ecology, Brian Beckage, Lawrence Joseph, Patrick Belisle, David B. Wolfson, and William J. Platt
The N-terminal extensions of Deinococcus radiodurans Dps-1 mediate DNA major groove interactions as well as assembly of the dodecamer, Gargi Bhattacharyya and Anne Grove
Henry Carl Aldrich (1941-2005): odyssey of a myxomycetologist, Meredith Blackwell
Requirement of Nhp6 proteins for transcription of a subset of tRNA genes and heterochromatin barrier function in Saccharomyces cerevisiae, Priscilla Braglia, Sandra L. Dugas, David Donze, and Giorgio Dieci
The role of the specific, profilaggrin-containing keratohyalin granules in the developing epidermis of the fetal horse hoof, Hermann H. Bragulla and Dominique G. Homberger
The importance of data partitioning and the utility of bayes factors in bayesian phylogenetics, Jeremy M. Brown and Alan R. Lemmon
Evolution into and out of the Andes: A Bayesian analysis of historical diversification in Thamnophilus antshrikes, Robb T. Brumfield and Scott V. Edwards
Birds of the central rio paracti valley, a humid montane forest in departamento Cochabamba, Bolivia, Robb T. Brumfield and Maillard Z. Oswaldo
Phylogenetic conservatism and antiquity of a tropical specialization: Army-ant-following in the typical antbirds (Thamnophilidae), Robb T. Brumfield, Jose G. Tello, Z. A. Cheviron, Matthew D. Carling, Nanette Crochet, and Kenneth V. Rosenberg
Is the protein folding an aim-oriented process? Human haemoglobin as example, Michal Brylinski, Leszek Konieczny, and Irena Roterman
Prediction of functional sites based on the fuzzy oil drop model, Michał Bryliński, Katarzyna Prymula, Wiktor Jurkowski, Marek Kochańczyk, Ewa Stawowczyk, Leszek Konieczny, and Irena Roterman
Localization of ligand binding site in proteins identified in silico, M. Michal Brylinski, Marek Kochanczyk, Elzbieta Broniatowska, and Irena Roterman
The katanin microtubule severing protein in plants, David H. Burk, Ruiqin Zhong, and Zheng Hua Ye
Assessing among-locus variation in the inference of seed plant phylogeny, J. Gordon Burleigh and Sarah Mathews
Assessing systematic error in the inference of seed plant phylogeny, J. Gordon Burleigh and Sarah Mathews
Gene sampling strategies for multi-locus population estimates of genetic diversity (θ), Matthew D. Carling and Robb T. Brumfield
The benefits of bathing buds: Water calyces protect flowers from a microlepidopteran herbivore, Jane E. Carlson and Kyle E. Harms
Phylogeny and taxonomic revision of Nuchequula Whitley 1932 (Teleostei: Leiognathidae), with the description of a new species, Prosanta Chakrabarty and John S. Sparks
Relationships of the New World cichlid genus Hypsophrys Agassiz 1859 (Teleostei: Cichlidae), with diagnoses for the genus and its species, Prosanta Chakrabarty and John S. Sparks
Yeast Rpb9 plays an important role in ubiquitylation and degradation of Rpb1 in response to UV-induced DNA damage, Xuefeng Chen, Christine Ruggiero, and Shisheng Li
Fourfold polyphyly of the genus formerly known as Upucerthia, with notes on the systematics and evolution of the avian subfamily Furnariinae, R. Terry Chesser, F. Keith Barker, and Robb T. Brumfield
Tarphonomus, a new genus of ovenbird (Aves: Passeriformes: Furnariidae) from South America, R. Terry Chesser and Robb T. Brumfield
MacroH2A1 knockdown effects on the Peg3 imprinted domain, Jung Ha Choo, Jeong Do Kim, and Joomyeong Kim
In search of polymorphic Alu insertions with restricted geographic distributions, Richard Cordaux, Deepa Srikanta, Jungnam Lee, Mark Stoneking, and Mark A. Batzer
Neonatal influenza infection induces persistent airway dysfunction, S. Cormier, D. You, M. Ripple, and T. Simms
Energizing an invertebrate embryo: Bafilomycin-dependent respiration and the metabolic cost of proton pumping by the V-ATPase, Joseph A. Covi and Steven C. Hand
From population sources to sieves: The matrix alters host-parasitoid source-sink structure, James T. Cronin
Shared parasitoids in a metacommunity: Indirect interactions inhibit herbivore membership in local communities, James T. Cronin
Description, life history, and parasitism of a new species of Delphacid Planthopper (Hemiptera: Fulgoroidea), James T. Cronin and Stephen W. Wilson
Harnessing toxic reactions to signal stress: Reactions of nitric oxide with iron-sulfur centers and the informative case of SoxR protein, Bruce Demple, Huangen Ding, Binbin Ren, and Tiffany A. Reiter
Modeling and numerical simulation of biotin carboxylase kinetics: implications for half-sites reactivity, Marcio S. de Queiroz and Grover L. Waldrop
Tfb5 is partially dispensable for Rad26 mediated transcription coupled nucleotide excision repair in yeast, Baojin Ding, Christine Ruggiero, Xuefeng Chen, and Shisheng Li
Distinct iron binding property of two putative iron donors for the iron-sulfur cluster assembly: IscA and the bacterial frataxin ortholog CyaY under physiological and oxidative stress conditions, Huangen Ding, Juanjuan Yang, Liana C. Coleman, and Simon Yeung
Density gradient enrichment of Escherichia coli conditional msbA mutants, William T. Doerrler
YY1 as a controlling factor for the Peg3 and Gnas imprinted domains, Jeong Do Kim, Angela K. Hinz, Jung Ha Choo, Lisa Stubbs, and Joomyeong Kim
Structure and mechanism of the genomically encoded fosfomycin resistance protein, FosX, from Listeria monocytogenes, Kerry L. Fillgrove, Svetlana Pakhomova, Matthew R. Schaab, Marcia E. Newcomer, and Richard N. Armstrong
Induction of host chemotactic response by Encephalitozoon spp., Jeffrey Fischer, Jeffrey West, Nnenaya Agochukwu, Colby Suire, and Hollie Hale-Donze
Mixtures of metals and polynuclear aromatic hydrocarbons elicit complex, nonadditive toxicological interactions in meiobenthic copepods, John W. Fleeger, Kurt A. Gust, Sidney J. Marlborough, and Guglielmo Tita
Degradation of STAT5 proteins in 3T3-L1 adipocytes is induced by TNF-α and cycloheximide in a manner independent of STAT5A activation, Z. Elizabeth Floyd, Brant M. Segura, Fang He, and Jacqueline M. Stephens
An ancient repeat sequence in the ATP synthase beta-subunit gene of forcipulate sea stars, David W. Foltz
Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts, Yukichi Fujikawa and Naohiro Kato
UL20 protein functions precede and are required for the UL11 functions of herpes simplex virus type 1 cytoplasmic virion envelopment, Preston A. Fulmer, Jeffrey M. Melancon, Joel D. Baines, and Konstantin G. Kousoulas
Response of a native bamboo [Arundinaria gigantea (Walt.) Muhl.] in a wind-disturbed forest, Paul R. Gagnon, William J. Platt, and E. Barry Moser
Interactions of waterborne and dietary cadmium on the expression of calcium transporters in the gills of rainbow trout: Influence of dietary calcium supplementation, Fernando Galvez, Natasha M. Franklin, Ryan B. Tuttle, and Chris M. Wood
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica, Andrew J. Gentles, Matthew J. Wakefield, Oleksiy Kohany, Wanjun Gu, Mark A. Batzer, David D. Pollock, and Jerzy Jurka
Evolutionary and biomedical insights from the rhesus macaque genome, Richard A. Gibbs, Jeffrey Rogers, Michael G. Katze, Roger Bumgarner, George M. Weinstock, Elaine R. Mardis, Karin A. Remington, Robert L. Strausberg, J. Craig Venter, Richard K. Wilson, et al.
DNA methylation and histone acetylation patterns in cultured bovine fibroblasts for nuclear transfer, Angelica M. Giraldo, John W. Lynn, Megan N. Purpera, Robert A. Godke, and Kenneth R. Bondioli
Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages, Vicente Gomez-Alvarez, Gary M. King, and Klaus Nüsslein
SINEs, evolution and genome structure in the opossum, Wanjun Gu, David A. Ray, Jerilyn A. Walker, Erin W. Barnes, Andrew J. Gentles, Paul B. Samollow, Jerzy Jurka, Mark A. Batzer, and David D. Pollock
Life without water: Expression of plant LEA genes by an anhydrobiotic arthropod, Steven C. Hand, Dana Jones, Michael A. Menze, and Trudy L. Witt
Mobile DNA in Old World monkeys: A glimpse through the rhesus macaque genome, Kyudong Han, Miriam K. Konkel, Jinchuan Xing, Hui Wang, Jungnam Lee, Thomas J. Meyer, Charles T. Huang, Erin Sandifer, Kristi Hebert, Erin W. Barnes, et al.
Alu recombination-mediated structural deletions in the chimpanzee genome, Kyudong Han, Jungnam Lee, Thomas J. Meyer, Jianxin Wang, Shurjo K. Sen, Deepa Srikanta, Ping Liang, and Mark A. Batzer
Landscape context outweighs local habitat quality in its effects on herbivore dispersal and distribution, Kyle J. Haynes, Forrest P. Dillemuth, Bryan J. Anderson, Alyssa S. Hakes, Heather B. Jackson, S. Elizabeth Jackson, and James T. Cronin
Footprints on water: The genetic wake of dispersal among reefs, M. E. Hellberg
Population spread of the introduced red imported fire ant parasitoid, Pseudacteon tricuspis Borgmeier (Diptera: Phoridae), in Louisiana, D. C. Henne, S. J. Johnson, and J. T. Cronin
A SINE-based dichotomous key for primate identification, Scott W. Herke, Jinchuan Xing, David A. Ray, Jacquelyn W. Zimmerman, Richard Cordaux, and Mark A. Batzer
Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor, Shelley E. Hoeft, Jodi Switzer Blum, John F. Stolz, F. Robert Tabita, Brian Witte, Gary M. King, Joanne M. Santini, and Ronald S. Oremland
Effective treatment of human breast tumor in a mouse xenograft model with herpes simplex virus type 1 specifying the NV1020 genomic deletion and the gBsyn3 syncytial mutation enabling high viral replication and spread in breast cancer cells, Anna H. Israyelyan, Jeffrey M. Melancon, Larry G. Lomax, Inder Sehgal, Carola Leuschner, Michael T. Kearney, Vladimir N. Chouljenko, and Abolghasem Baghian
Comparative mitochondrial genomics of snakes: Extraordinary substitution rate dynamics and functionality of the duplicate control region, Zhi J. Jiang, Todd A. Castoe, Christopher C. Austin, Frank T. Burbrink, Matthew D. Herron, Jimmy A. McGuire, Christopher L. Parkinson, and David D. Pollock
Soil nutrients influence spatial distributions of tropical trees species, Robert John, James W. Dalling, Kyle E. Harms, Joseph B. Yavitt, Robert F. Stallard, Matthew Mirabello, Stephen P. Hubbell, Renato Valencia, Hugo Navarrete, Martha Vallejo, et al.