Submissions from 2013
Model combustion-generated particulate matter containing persistent free radicals redox cycle to produce reactive oxygen species, Matthew A. Kelley, Valeria Y. Hebert, Taylor M. Thibeaux, Mackenzie A. Orchard, Farhana Hasan, Stephania A. Cormier, Paul T. Thevenot, Slawomir M. Lomnicki, Kurt J. Varner, Barry Dellinger, et al.
Trade-offs, geography, and limits to thermal adaptation in a tide pool copepod, Morgan W. Kelly, Richard K. Grosberg, and Eric Sanford
Adaptation and the physiology of ocean acidification, Morgan W. Kelly and Gretchen E. Hofmann
Natural variation and the capacity to adapt to ocean acidification in the keystone sea urchin Strongylocentrotus purpuratus, Morgan W. Kelly, Jacqueline L. Padilla-Gamiño, and Gretchen E. Hofmann
Feather coloration in museum specimens is related to feather corticosterone, Eileen A. Kennedy, Christine R. Lattin, L. Michael Romero, and Donald C. Dearborn
Integrative annotation of variants from 1092 humans: Application to cancer genomics, E. Khurana, Y. Fu, V. Colonna, X. J. Mu, H. M. Kang, T. Lappalainen, A. Sboner, L. Lochovsky, J. Chen, A. Harmanci, et al.
Herpes simplex virus 1 glycoprotein M and the membrane-associated protein UL11 are required for virus-induced cell fusion and efficient virus entry, In-Joong Kim, Vladimir N. Chouljenko, Jason D. Walker, and Konstantin G. Kousoulas
Overexpression of arabidopsis YUCCA6 in potato results in high-auxin developmental phenotypes and enhance, Jeong Im Kim, Dongwon Baek, Hyeong Cheol Park, Hyun Jin Chun, Dong Ha Oh, Min Kyung Lee, Joon Yung Cha, Woe Yeon Kim, Min Chul Kim, Woo Sik Chung, et al.
Peg3 mutational effects on reproduction and placenta-specific gene families, Joomyeong Kim, Wesley D. Frey, Hongzhi He, Hana Kim, Muhammad B. Ekram, Arundhati Bakshi, Mohammad Faisal, Bambarendage P.U. Perera, An Ye, and Ryoichi Teruyama
Physiological effects of tourism and associated food provisioning in an endangered iguana, Charles R. Knapp, Kirsten N. Hines, Trevor T. Zachariah, Caro Perez-Heydrich, John B. Iverson, Sandra D. Buckner, Shelley C. Halach, Christine R. Lattin, and L. Michael Romero
Mycobacterium smegmatis Ku binds DNA without free ends, A.K. Kushwaha and A. Grove
C-terminal low-complexity sequence repeats of Mycobacterium smegmatis Ku modulate DNA binding, Ambuj K. Kushwaha and Anne Grove
Iron binding activity is essential for the function of IscA in iron-sulphur cluster biogenesis, Aaron P. Landry, Zishuo Cheng, and Huangen Ding
Seasonal variation in corticosterone receptor binding in brain, hippocampus, and gonads in House Sparrows (Passer domesticus), Christine R. Lattin and L. Michael Romero
The size of a melanin-based plumage ornament correlates with glucocorticoid receptor concentrations in the skin of that ornament, Christine R. Lattin and L. Michael Romero
Intracellular glucocorticoid receptors inspleen, but not skin, vary seasonally inwild house sparrows (Passer domesticus), Christine R. Lattin, K. Waldron-Francis, and L. Michael Romero
Adolescent disclosure and concealment: Longitudinal and concurrent associations with aggression, Chelom E. Leavitt, David A. Nelson, Sarah M. Coyne, and Craig H. Hart
Hijacking membrane transporters for arsenic phytoextraction, Melissa S. LeBlanc, Elizabeth C. McKinney, Richard B. Meagher, and Aaron P. Smith
The effects of leaf litter evenness on decomposition depend on which plant functional group is dominant, Daijiang Li, Shaolin Peng, and Baoming Chen
MITOCHONDRIAL AND NEXT-GENERATION SEQUENCE DATA USED TO INFER PHYLOGENETIC RELATIONSHIPS AND SPECIES LIMITS IN THE CLAPPER/KING RAIL COMPLEX, James M. Maley and Robb T. Brumfield
Improved tolerance to salt and water stress in Drosophila melanogaster cells conferred by late embryogenesis abundant protein, Matthew R. Marunde, Dilini A. Samarajeewa, John Anderson, Shumin Li, Steven C. Hand, and Michael A. Menze
Social descent with territory loss causes rapid behavioral, endocrine and transcriptional changes in the brain, Karen P. Maruska, Lisa Becker, Anoop Neboori, and Russell D. Fernald
Social regulation of male reproductive plasticity in an African cichlid fish, Karen P. Maruska and Russell D. Fernald
Social Opportunity Causes Rapid Transcriptional Changes in the Social Behaviour Network of the Brain in an African Cichlid Fish, K. P. Maruska, A. Zhang, A. Neboori, and R. D. Fernald
A new species of Roeboides (Teleostei: Characidae) from Costa Rica and Panama, with a key to the middle American species of the genus, Wilfredo A. Matamoros, Prosanta Chakrabarty, Arturo Angulo, Carlos A. Garita-Alvarado, and Caleb D. McMahan
Transcriptional analysis of the three phosphoglycolate phosphatase genes in wild type and the pgp1 mutant of chlamydomonas reinhardtii, Yunbing Ma, Megan M. Hartman, and James V. Moroney
Two new species of Eimeria Schneider, 1875 (Apicomplexa: Eimeriidae) from emerald tree skinks, Lamprolepis smaragdina (Lesson) (Sauria: Scincidae) from Papua New Guinea and the Philippines, Chris T. McAllister, R. Scott Seville, Donald W. Duszynski, Sarah E. Bush, Robert N. Fisher, and Christopher C. Austin
Next-generation phylogenetics takes root, J.E. McCormack and B.C. Faircloth
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing, John E. McCormack, Michael G. Harvey, Brant C. Faircloth, Nicholas G. Crawford, Travis C. Glenn, and Robb T. Brumfield
Applications of next-generation sequencing to phylogeography and phylogenetics, John E. McCormack, Sarah M. Hird, Amanda J. Zellmer, Bryan C. Carstens, and Robb T. Brumfield
Analysis of western lowland gorilla (Gorilla gorilla gorilla) specific Alu repeats, Adam T. McLain, Glenn W. Carman, Mitchell L. Fullerton, Thomas O. Beckstrom, William Gensler, Thomas J. Meyer, Christopher Faulk, and Mark A. Batzer
Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae)., Caleb D. McMahan, Prosanta Chakrabarty, John S. Sparks, W. M.Leo Smith, and Matthew P. Davis
Phylogeny and origins of holoparasitism in Orobanchaceae, Joel R. Mcneal, Jonathan R. Bennett, Andrea D. Wolfe, and Sarah Mathews
There is no correlation between glucocorticoid receptor mRNA expression and protein binding in the brains of house sparrows (Passer domesticus), Carlos O. Medina, Christine R. Lattin, M. McVey, and L. Michael Romero
Evidence for multiple introductions of Phragmites australis to North America: Detection of a new non-native haplotype, Laura A. Meyerson and James T. Cronin
Marital satisfaction and depressive symptoms in China, Richard B. Miller, Tiffany M. Mason, Jerevie M. Canlas, Dahua Wang, David A. Nelson, and Craig H. Hart
Inhibition of soluble epoxide hydrolase by fulvestrant and sulfoxides, Christophe Morisseau, Svitlana Pakhomova, Sung Hee Hwang, Marcia E. Newcomer, and Bruce D. Hammock
Photorespiration and carbon concentrating mechanisms: Two adaptations to high O2, low CO2 conditions, James V. Moroney, Nadine Jungnick, Robert J. Dimario, and David J. Longstreth
The periplasmic carbonic anhydrase, CAH1, is absent in the sequenced chlamydomonas reinhardtii strain, CC-503, Bratati Mukherjee, Trang T. Pham, Yunbing Ma, Tiffany A. Simms, and James V. Moroney
Impact of obesity on IL-12 family gene expression in insulin responsive tissues, Heesun Nam, Bradley S. Ferguson, Jacqueline M. Stephens, and Ron F. Morrison
Parental psychological control dimensions: Connections with Russian preschoolers' physical and relational aggression, David A. Nelson, Chongming Yang, Sarah M. Coyne, Joseph A. Olsen, and Craig H. Hart
Phylogeny and phylogeography of Mantophryne (Anura: Microhylidae) reveals cryptic diversity in New Guinea, Lauren A. Oliver, Eric N. Rittmeyer, Fred Kraus, Stephen J. Richards, and Christopher C. Austin
Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, strongylocentrotus purpuratus, Jacqueline L. Padilla-Gamiño, Morgan W. Kelly, Tyler G. Evans, and Gretchen E. Hofmann
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins, T. L. Parchman, Z. Gompert, M. J. Braun, R. T. Brumfield, D. B. McDonald, J. A.C. Uy, G. Zhang, E. D. Jarvis, B. A. Schlinger, and C. A. Buerkle
Metabolic downregulation and inhibition of carbohydrate catabolism during diapause in embryos of artemia franciscana, Yuvraj N. Patil, Brad Marden, Martin D. Brand, and Steven C. Hand
Synthesis and structure-activity relationship of piperidine-derived non-urea soluble epoxide hydrolase inhibitors, Stevan Pecic, Svetlana Pakhomova, Marcia E. Newcomer, Christophe Morisseau, Bruce D. Hammock, Zhengxiang Zhu, Alison Rinderspacher, and Shi Xian Deng
Detection and phylogenetic analysis of the membrane-bound nitrate reductase (Nar) in pure cultures and microbial communities from deep-sea hydrothermal vents, Ileana Pérez-Rodríguez, Kenneth A. Bohnert, Mariola Cuebas, Ramaydalis Keddis, and Costantino Vetriani
SIZE VARIATION, GROWTH STRATEGIES, AND THE EVOLUTION OF MODULARITY IN THE MAMMALIAN SKULL, Arthur Porto, Leila Teruko Shirai, Felipe Bandoni Oliveira, and Gabriel Marroig
Long prereproductive selection and divergence by depth in a caribbean candelabrum coral, Carlos Prada and Michael E. Hellberg
CD36 mRNA in the gastrointestinal tract is differentially regulated by dietary fat intake in obesity-prone and obesity-resistant rats, Stefany D. Primeaux, H Douglas Braymer, and George A. Bray
High fat diet differentially regulates the expression of olfactory receptors in the duodenum of obesity-prone and obesity-resistant rats, Stefany D. Primeaux, H Douglas Braymer, and George A. Bray
Variation in One Residue Associated with the Metal Ion-Dependent Adhesion Site Regulates αIIbβ3 Integrin Ligand Binding Affinity, Joel Raborn, Ting Fu, Xue Wu, Zhilong Xiu, Guohui Li, and Bing Hao Luo
Rampant polyphyly indicates cryptic diversity in a clade of Neotropical flycatchers (Aves: Tyrannidae), Frank E. Rheindt, Andrés M. Cuervo, and Robb T. Brumfield
Naringenin inhibits adipogenesis and reduces insulin sensitivity and adiponectin expression in adipocytes, Allison J. Richard, Zhaleh Amini-Vaughan, David M. Ribnicky, and Jacqueline M. Stephens
Physical clustering of FLC alleles during polycomb-mediated epigenetic silencing in vernalization, Stefanie Rosa, Filomena De Lucia, Joshua S. Mylne, Danling Zhu, Nobuko Ohmido, Ali Pendle, Naohiro Kato, Peter Shaw, and Caroline Dean
Synthesis and characterization of complex mixtures consisting of cyclic and linear polyamides from ethyl Bis-ketal galactarates, C. Rosu, I.I. Negulescu, R. Cueto, R. Laine, and W.H. Daly
Particulate Matter Containing Environmentally Persistent Free Radicals and Adverse Infant Respiratory Health Effects: A Review, Jordy Saravia, Greg I. Lee, Slawo Lomnicki, Barry Dellinger, and Stephania A. Cormier
Immunosuppressive effects of early-life exposure to combustion-derived particulate matter: implications for enhanced severity due to respiratory tract infections, J. Saravia, D. H. You, G. Lee, and S. Cormier
Variation in sodium current amplitude between vasopressin and oxytocin hypothalamic supraoptic neurons, Reese Scroggs, Lie Wang, Ryoichi Teruyama, and William E. Armstrong
DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1, Kathiresan Selvam, Jana R. Duncan, Masashi Tanaka, and John R. Battista
Multiple envelope stress response pathways are activated in an Escherichia coli strain with mutations in two members of the deda membrane protein family, Rakesh Sikdar, Angelica R. Simmons, and William T. Doerrler
Profluorogenic reductase substrate for rapid, selective, and sensitive visualization and detection of human cancer cells that overexpress NQO1, William C. Silvers, Bijeta Prasai, David H. Burk, Matthew L. Brown, and Robin L. McCarley
Alkane hydroxylase gene (alkB) phylotype composition and diversity in northern Gulf of Mexico bacterioplankton, Conor B. Smith, Bradley B. Tolar, James T. Hollibaugh, and Gary M. King
H3K4 methyltransferase Set1 is involved in maintenance of ergosterol homeostasis and resistance to Brefeldin A, Paul F. South, Kayla M. Harmeyer, Nina D. Serratore, and Scott D. Briggs
Nitric oxide production and the expression of two nitric oxide synthases in the avian retina, Merve Tekmen-Clark and Evanna Gleason
Chronic alcohol induces M2 polarization enhancing pulmonary disease caused by exposure to particulate air pollution, Paul Thevenot, Jordy Saravia, Joseph Giaimo, Kyle I. Happel, Tammy R. Dugas, and Stephania A. Cormier
Radical-containing ultrafine particulate matter initiates epithelial-to-mesenchymal transitions in airway epithelial cells, Paul T. Thevenot, Jordy Saravia, Nili Jin, Joseph D. Giaimo, Regina E. Chustz, Sarah Mahne, Matthew A. Kelley, Valeria Y. Hebert, Barry Dellinger, Tammy R. Dugas, et al.
DNA-binding motif and target genes of the imprinted transcription factor PEG3, Michelle M. Thiaville, Jennifer M. Huang, Hana Kim, Muhammad B. Ekram, Tae Young Roh, and Joomyeong Kim
Identification of an Evolutionarily Conserved Cis-Regulatory Element Controlling the Peg3 Imprinted Domain, Michelle M. Thiaville, Hana Kim, Wesley D. Frey, and Joomyeong Kim
The direct and indirect effects of home clutter on parenting, Carly M. Thornock, Larry J. Nelson, Clyde C. Robinson, and Craig H. Hart
An analysis of thaumarchaeota populations from the northern Gulf of Mexico, Bradley B. Tolar, Gary M. King, and James T. Hollibaugh
Seasonal changes and treatment effects on soil inorganic nutrients following a decade of fertilizer addition in a lowland tropical forest, Benjamin L. Turner, Joseph B. Yavitt, Kyle E. Harms, Milton N. Garcia, Tania E. Romero, and S. Joseph Wright
Scheffersomyces cryptocercus: a new xylose-fermenting yeast associated with the gut of wood roaches and new combinations in the Sugiyamaella yeast clade, Hector Urbina, Robert Frank, and Meredith Blackwell
Photosystem II: The reaction center of oxygenic photosynthesis, David J. Vinyard, Gennady M. Ananyev, and G. Charles Dismukes
Natural variants of photosystem II subunit D1 tune photochemical fitness to solar intensity, David J. Vinyard, Javier Gimpel, Gennady M. Ananyev, Mario A. Cornejo, Susan S. Golden, Stephen P. Mayfield, and G. Charles Dismukes
Thermodynamically accurate modeling of the catalytic cycle of photosynthetic oxygen evolution: A mathematical solution to asymmetric Markov chains, David J. Vinyard, Chase E. Zachary, Gennady Ananyev, and G. Charles Dismukes
Maternal exposure to combustion generated PM inhibits pulmonary Th1 maturation and concomitantly enhances postnatal asthma development in offspring, Pingli Wang, Dahui You, Jordy Saravia, Huahao Shen, and Stephania A. Cormier
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations, David J. Witherspoon, Yuhua Zhang, Jinchuan Xing, W. Scott Watkins, Hongseok Ha, Mark A. Batzer, and Lynn B. Jorde
IL-4Rα on CD4+ T cells plays a pathogenic role in respiratory syncytial virus reinfection in mice infected initially as neonates, Dahui You, Nico Marr, Jordy Saravia, Bishwas Shrestha, Greg I. Lee, Stuart E. Turvey, Frank Brombacher, De'broski R. Herbert, and Stephania A. Cormier
Requirement of vesicle-associated membrane protein 721 and 722 for sustained growth during immune responses in Arabidopsis., Hye Sup Yun, Mark Kwaaitaal, Naohiro Kato, Changhyun Yi, Sohyeon Park, Masa H. Sato, Paul Schulze-Lefert, and Chian Kwon
Identification of STAT target genes in adipocytes, Peng Zhao and Jacqueline M. Stephens
STAT1, NF-κB and ERKs play a role in the induction of lipocalin-2 expression in adipocytes, Peng Zhao and Jacqueline Marie Stephens
Submissions from 2012
Purity and decomposition theorems for staggered sheaves, Pramod N. Achar and David Treumann
TsHKT1;2, a HKT1 homolog from the extremophile arabidopsis relative Thellungiella salsuginea, shows K + specificity in the presence of NaCl, Zahir Ali, Hyeong Cheol Park, Akhtar Ali, Dong Ha Oh, Rashid Aman, Anna Kropornicka, Hyewon Hong, Wonkyun Choi, Woo Sik Chung, Woe Yeon Kim, et al.
An integrated map of genetic variation from 1,092 human genomes, David M. Altshuler, Richard M. Durbin, Gonçalo R. Abecasis, David R. Bentley, Aravinda Chakravarti, Andrew G. Clark, Peter Donnelly, Evan E. Eichler, Paul Flicek, Stacey B. Gabriel, et al.
Genomic impact of eukaryotic transposable elements, Irina R. Arkhipova, Mark A. Batzer, Juergen Brosius, Cédric Feschotte, John V. Moran, Jürgen Schmitz, and Jerzy Jurka
Vitronectin inhibits neutrophil apoptosis through activation of integrin-associated signaling pathways, Hong Beom Bae, Jaroslaw W. Zmijewski, Jessy S. Deshane, Degui Zhi, Lawrence C. Thompson, Cynthia B. Peterson, David D. Chaplin, and Edward Abraham
No gene flow across the Eastern Pacific Barrier in the reef-building coral Porites lobata, Iliana B. Baums, Jennifer N. Boulay, Nicholas R. Polato, and Michael E. Hellberg
Genetic and morphological data support placement of Myrmotherula gularis (Spix) in the monotypic genus Rhopias Cabanis and Heine (Aves: Passeriformes: Thamnophilidae), Ricardo Belmonte-Lopes, Gustavo A. Bravo, Marcos R. Bornschein, Giovanni N. Maurício, Marcio R. Pie, and Robb T. Brumfield
Cytokinesis-Based Constraints on Polarized Cell Growth in Fission Yeast, K. Adam Bohnert and Kathleen L. Gould
Physiological biomarkers of hypoxic stress in red swamp crayfish Procambarus clarkii from field and laboratory experiments, Christopher P. Bonvillain, D Allen Rutherford, William E. Kelso, and Christopher C. Green
Multiple deletions reveal the essentiality of the DedA membrane protein family in Escherichia coli, Lisa A. Boughner and William T. Doerrler
Isleria, a new genus of antwren (Aves: Passeriformes: Thamnophilidae), Gustavo A. Bravo, R. Terry Chesser, and Robb T. Brumfield
DNA sequence data reveal a subfamily-level divergence within Thamnophilidae (Ayes: Passeriformes), Gustavo A. Bravo, J. V. Remsen Jr., Bret M. Whitney, and Robb T. Brumfield
The extrinsic proteins of Photosystem II, Terry M. Bricker, Johnna L. Roose, Robert D. Fagerlund, Laurie K. Frankel, and Julian J. Eaton-Rye
Embryonic development and metabolic costs in Gulf killifish Fundulus grandis exposed to varying environmental salinities, Charles A. Brown, Fernando Galvez, and Christopher C. Green
Embryonic development and metabolic costs in Gulf killifish Fundulus grandis exposed to varying environmental salinities, Charles A. Brown, Fernando Galvez, and Christopher C. Green
Perspectives in ornithology: Inferring the origins of lowland neotropical birds, Robb T. Brumfield
eThread: A Highly Optimized Machine Learning-Based Approach to Meta-Threading and the Modeling of Protein Tertiary Structures, Michal Brylinski and Daswanth Lingam
Tools for the identification of bioactives impacting the metabolic syndrome: Screening of a botanical extract library using subcutaneous and visceral human adipose-derived stem cell-based assays, Benjamin M. Buehrer, David J. Duffin, Y. Renee Lea-Currie, David Ribnicky, Ilya Raskin, Jacqueline M. Stephens, William T. Cefalu, and Jeffrey M. Gimble