Submissions from 2015
Yeast high mobility group protein HMO1 stabilizes chromatin and is evicted during repair of DNA double strand breaks, Arvind Panday, Li Juan Xiao, and Anne Grove
Cellular and molecular remodeling of inguinal adipose tissue mitochondria by dietary methionine restriction, Yuvraj N. Patil, Kelly N. Dille, David H. Burk, Cory C. Cortez, and Thomas W. Gettys
Standards for plant synthetic biology: A common syntax for exchange of DNA parts, Nicola J. Patron, Diego Orzaez, Sylvestre Marillonnet, Heribert Warzecha, Colette Matthewman, Mark Youles, Oleg Raitskin, Aymeric Leveau, Gemma Farré, Christian Rogers, et al.
Physiological management of dietary deficiency in n-3 fatty acids by spawning Gulf killifish (Fundulus grandis), Joshua T. Patterson and Christopher C. Green
Morphological variation and different branch modularity across contrasting flow conditions in dominant Pocillopora reef-building corals, David A. Paz-García, Alejandro Aldana-Moreno, Rafael A. Cabral-Tena, Francisco J. García-De-León, Michael E. Hellberg, and Eduardo F. Balart
Switch between morphospecies of pocillopora corals, David A. Paz-García, Michael E. Hellberg, Francisco J. García-de-León, and Eduardo F. Balart
Yy1 gene dosage effect and Bi-allelic expression of Peg3, Bambarendage P.U. Perera, Ryoichi Teruyama, and Joomyeong Kim
Effect of 6-month caloric restriction on Cu bound to ceruloplasmin in adult overweight subjects, Francesco Piacenza, Marco Malavolta, Andrea Basso, Laura Costarelli, Robertina Giacconi, Eric Ravussin, Leanne M. Redman, and Eugenio Mocchegiani
Biochemical characterization of RecA variants that contribute to extreme resistance to ionizing radiation, Joseph R. Piechura, Tzu-Ling Tseng, Hsin-Fang Hsu, Rose T. Byrne, Tricia A. Windgassen, Sindhu Chitteni-Pattu, John R. Battista, and Hung-Wen Li
Physiological Profiles as Indicators of Response to Hurricane Disturbance for Three Coastal Wetland Species, Alexandria Lynn Pivovaroff, Cheryl Swift, Loretta L. Battaglia, Brittany Kunz, William J. Platt, and Carrie L. Yoder
Short-term effects of herbicides and a prescribed fire on restoration of a shrub-encroached pine savanna, William J. Platt, Alex K. Entrup, Emily K. Babl, Cody Coryell-Turpin, Viet Dao, James A. Hebert, Claire D. Labarbera, Jené F.L. Noto, Similoluwa O. Ogundare, Lucas K. Stamper, et al.
Hurricane wrack generates landscape-level heterogeneity in coastal pine savanna, William J. Platt, Dwayne Joseph, and Darin P. Ellair
Seasonality of fire weather strongly influences fire regimes in south Florida savanna-grassland landscapes, William J. Platt, Steve L. Orzell, and Matthew G. Slocum
Physiological strategies during animal diapause: Lessons from brine shrimp and annual killifish, Jason E. Podrabsky and Steven C. Hand
Rate of evolutionary change in cranial morphology of the marsupial genus Monodelphis is constrained by the availability of additive genetic variation, A. Porto, H. Sebastião, S. E. Pavan, J. L. VandeBerg, G. Marroig, and J. M. Cheverud
Phylogenetic signals in host-parasite associations for Neotropical bats and Nearctic desert rodents, Steven J. Presley, Tad Dallas, Brian T. Klingbeil, and Michael R. Willig
Development and characterization of microsatellite loci for common raven (Corvus corax) and cross species amplification in other Corvidae, C.L. Pruett, L. Wan, T. Li, C. Spern, S.L. Lance, T. Glenn, B. Faircloth, and K. Winker
Oxidized and reduced [2Fe-2S] clusters from an iron(I) synthon, Megan E. Reesbeck, Meghan M. Rodriguez, William W. Brennessel, Brandon Q. Mercado, David Vinyard, and Patrick L. Holland
Combined next-generation sequencing and morphology reveal fine-scale speciation in Crocodile Skinks (Squamata: Scincidae: Tribolonotus), Eric N. Rittmeyer and Christopher C. Austin
Isothiocyanate-rich Moringa oleifera extract reduces weight gain, insulin resistance, and hepatic gluconeogenesis in mice, Patricio Rojas-Silva, Tugba Boyunegmez Tumer, Peter Kuhn, Allison J. Richard, Shawna Wicks, Jacqueline M. Stephens, Zhong Wang, Randy Mynatt, William Cefalu, and Ilya Raskin
Sugar-based polyamides: Self-organization in strong polar organic solvents, Cornelia Rosu, Paul S. Russo, William H. Daly, Rafael Cueto, John A. Pople, Roger A. Laine, and Ioan I. Negulescu
Novel mode of defective neural tube closure in the Non-Obese Diabetic (NOD) mouse strain, J. Michael Salbaum, Claudia Kruger, Jacalyn Macgowan, Nils J. Herion, David Burk, and Claudia Kappen
Respiratory Syncytial Virus Disease Is Mediated by Age-Variable IL-33, Jordy Saravia, Dahui You, Bishwas Shrestha, Sridhar Jaligama, David Siefker, Greg I. Lee, Jeffrey N. Harding, Tamekia L. Jones, Cynthia Rovnaghi, Bindiya Bagga, et al.
Respiratory syncytial virus disease is mediated by age-variable IL-33 and innate lymphoid cells, J. Saravia, D. H. You, B. Shrestha, G. Lee, S. Jaligama, C. Rovnaghi, B. Bagga, J. DeVincenzo, and S. Cormier
Corticosteroids in pediatric ARDS: all cards on the table, Andreas Schwingshackl, Gianfranco Umberto Meduri, Dai Kimura, Stephania A. Cormier, and Kanwaljeet J.S. Anand
Role of IL-4R alpha on myeloid dendritic cells in pathogenicity of respiratory syncytial virus infection and asthma development, B. Shrestha, D. H. You, J. Saravia, D. Siefker, and S. Cormier
A Stable Coordination Complex of Rh(IV) in an N,O-Donor Environment, Shashi B. Sinha, Dimitar Y. Shopov, Liam S. Sharninghausen, David J. Vinyard, Brandon Q. Mercado, Gary W. Brudvig, and Robert H. Crabtree
A recommended workflow for DNase I footprinting using a capillary electrophoresis genetic analyzer, Smitha Sivapragasam, Anuja Pande, and Anne Grove
Herpes Simplex Vaccines: Prospects of Live-attenuated HSV Vaccines to Combat Genital and Ocular infections, Brent Stanfield and Konstantin Gus Kousoulas
Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals, Vincent A. Streva, Vallmer E. Jordan, Sara Linker, Dale J. Hedges, Mark A. Batzer, and Prescott L. Deininger
An integrated map of structural variation in 2,504 human genomes, Peter H. Sudmant, Tobias Rausch, Eugene J. Gardner, Robert E. Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus His Yang Fritz, et al.
Exposure to electronic cigarettes impairs pulmonary anti-bacterial and anti-viral defenses in a mouse model, Thomas E. Sussan, Sachin Gajghate, Rajesh K. Thimmulappa, Jinfang Ma, Jung Hyun Kim, Kuladeep Sudini, Nicola Consolini, Stephania A. Cormier, Slawo Lomnicki, Farhana Hasan, et al.
Complete Genome Sequence of Citrobacter Phage CVT22 Isolated from the Gut of the Formosan Subterranean Termite, Coptotermes formosanus Shiraki, Chinmay Vijay Tikhe, Thomas M. Martin, Chris R. Gissendanner, and Claudia Husseneder
Genomic approaches to understanding population divergence and speciation in birds, David P.L. Toews, Leonardo Campagna, Scott A. Taylor, Christopher N. Balakrishnan, Daniel T. Baldassarre, Petra E. Deane-Coe, Michael G. Harvey, Daniel M. Hooper, Darren E. Irwin, Caroline D. Judy, et al.
Seasonal changes in soil organic matter after a decade of nutrient addition in a lowland tropical forest, Benjamin L. Turner, Joseph B. Yavitt, Kyle E. Harms, Milton N. Garcia, and S. Joseph Wright
Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America, Yalma L. Vargas-Rodriguez, William J. Platt, Lowell E. Urbatsch, and David W. Foltz
Insights into substrate binding to the oxygen-evolving complex of photosystem II from ammonia inhibition studies, David J. Vinyard and Gary W. Brudvig
Photosynthetic water oxidation: Binding and activation of substrate waters for O-O bond formation, David J. Vinyard, Sahr Khan, and Gary W. Brudvig
Oxygen-evolving complex of Photosystem II: An analysis of second-shell residues and hydrogen-bonding networks, Leslie Vogt, David J. Vinyard, Sahr Khan, and Gary W. Brudvig
UCP1 is an essential mediator of the effects of methionine restriction on energy balance but not insulin sensitivity, Desiree Wanders, David H. Burk, Cory C. Cortez, Nancy T. Van, Kirsten P. Stone, Mollye Baker, Tamra Mendoza, Randall L. Mynatt, and Thomas W. Gettys
Draft Genome Sequences of Edwardsiella ictaluri Strains LADL11-100 and LADL11-194 Isolated from Zebrafish Danio rerio, Rui Wang, Hasan C. Tekedar, Mark L. Lawrence, Vladimir N. Chouljenko, Joohyun Kim, Nayong Kim, Konstantin G. Kousoulas, and John P. Hawke
Enhanced DNA binding affinity of RecA protein from Deinococcus radiodurans, Jaycob D. Warfel and Vince J. LiCata
Relative abundance of and composition within fungal orders differ between cheatgrass (Bromus tectorum) and sagebrush (Artemisia tridentate)-associated soils, Carolyn F. Weber, Gary M. King, and Ken Aho
Correction: Relative abundance of and composition within fungal orders differ between cheatgrass (Bromus tectorum) and sagebrush (Artemisia tridentata)-associated soils, C. F. Weber, G. M. King, and K. Aho
Suppression of RNAi by dsRNA-Degrading RNaseIII Enzymes of Viruses in Animals and Plants, Isabel Weinheimer, Yaming Jiu, Minna Liisa Rajamäki, Olli Matilainen, Jukka Kallijärvi, Wilmer J. Cuellar, Rui Lu, Mart Saarma, Carina I. Holmberg, Jussi Jäntti, et al.
Impaired mitochondrial fat oxidation induces adaptive remodeling of muscle metabolism, Shawna E. Wicks, Bolormaa Vandanmagsar, Kimberly R. Haynie, Scott E. Fuller, Jaycob D. Warfel, Jacqueline M. Stephens, Miao Wang, Xianlin Han, Jingying Zhang, Robert C. Noland, et al.
The F-BAR Cdc15 promotes contractile ring formation through the direct recruitment of the formin Cdc12, Alaina H. Willet, Nathan A. McDonald, K. Adam Bohnert, Michelle A. Baird, John R. Allen, Michael W. Davidson, and Kathleen L. Gould
Co-evolution of proteins and solutions: Protein adaptation versus cytoprotective micromolecules and their roles in marine organisms, Paul H. Yancey and Joseph F. Siebenaller
Deletion of the proposed iron chaperones IscA/SufA results in accumulation of a red intermediate cysteine desulfurase IscS in Escherichia coli, Jing Yang, Guoqiang Tan, Ting Zhang, Robert H. White, Jianxin Lu, and Huangen Ding
Building a better neonatal mouse model to understand infant respiratory syncytial virus disease, Dahui You, David T. Siefker, Bishwas Shrestha, Jordy Saravia, and Stephania A. Cormier
Building a Better Mouse Model to Understand Infant Respiratory Syncytial Virus Disease, D. H. You, D. Siefker, B. Shrestha, J. Saravia, and S. Cormier
Confirming the multidimensionality of psychologically controlling parenting among Chinese-American mothers: Love withdrawal, guilt induction, and shaming, Jing Yu, Charissa S.L. Cheah, Craig H. Hart, Shuyan Sun, and Joseph A. Olsen
Submissions from 2014
Improved upper limits on the stochastic gravitational-wave background from 2009-2010 LIGO and Virgo data, J Aasi, B P. Abbott, R Abbott, T Abbott, M R. Abernathy, T Accadia, F Acernese, and K Ackley
Search for gravitational waves associated with γ-ray bursts detected by the interplanetary network, J Aasi, B P. Abbott, R Abbott, T Abbott, M R. Abernathy, F Acernese, K Ackley, and C Adams
A raman microspectroscopy study of water and trehalose in spin-dried cells, Alireza Abazari, Nilay Chakraborty, Steven Hand, Alptekin Aksan, and Mehmet Toner
Weyl group actions on the Springer sheaf, Pramod N. Achar, Anthony Henderson, Daniel Juteau, and Simon Riche
Koszul duality and mixed hodge modules, Pramod N. Achar and Sarah Kitchen
Binding of HSV-1 glycoprotein K (gK) to signal peptide peptidase (SPP) is required for virus infectivity, Sariah J. Allen, Kevin R. Mott, Yoshiharu Matsuura, Kohji Moriishi, Konstantin G. Kousoulas, and Homayon Ghiasi
Enteric YaiW is a surface-exposed outer membrane lipoprotein that affects sensitivity to an antimicrobial peptide, Markus F.F. Arnold, Paola Caro-Hernandez, Karen Tan, Giulia Runti, Silvia Wehmeier, Marco Scocchi, William T. Doerrler, Graham C. Walker, and Gail P. Ferguson
Retrotransposon-based profiling of mammalian epigenomes: DNA methylation of IAP LTRs in embryonic stem, somatic and cancer cells, Arundhati Bakshi and Joomyeong Kim
Using Arabidopsis-Related Model Species (ARMS): Growth, Genetic Transformation, and Comparative Genomics, Giorgia Batelli, Dong-Ha Oh, Matilde Paino D’Urzo, Francesco Orsini, Maheshi Dassanayake, Jian-Kang Zhu, Hans J. Bohnert, Ray A. Bressan, and Albino Maggio
Using arabidopsis-related model species (ARMS): Growth, genetic transformation, and comparative genomics, G. Batelli, D.-H. Oh, M.P. D'Urzo, F. Orsini, M. Dassanayake, J.-K. Zhu, H.J. Bohnert, R.A. Bressan, and A. Maggio
Response of native insect communities to invasive plants, T. Martijn Bezemer, Jeffrey A. Harvey, and James T. Cronin
Hurricane activity and the large-scale pattern of spread of an invasive plant species, Ganesh P. Bhattarai and James T. Cronin
Synthesis and in vitro evaluation of BBB permeability, tumor cell uptake, and cytotoxicity of a series of carboranylporphyrin conjugates, N V. Bhupathiraju, Xiaoke Hu, Zehua Zhou, Frank R. Fronczek, Pierre-Olivier Couraud, Ignacio A. Romero, Babette Weksler, and M Graça Vicente
Hepatitis E antibodies in laboratory rabbits from 2 US vendors, Leslie Birke, Stephania A. Cormier, Dahui You, Rhett W. Stout, Christian Clement, Merlin Johnson, and Hilary Thompson
Intracellular localization of group 3 LEA proteins in embryos of Artemia franciscana, Leaf C. Boswell and Steven C. Hand
Group 3 late embryogenesis abundant proteins from embryos of Artemia franciscana: Structural properties and protective abilities during desiccation, Leaf C. Boswell, Michael A. Menze, and Steven C. Hand
Quantification of cellular protein expression and molecular features of group 3 LEA proteins from embryos of Artemia franciscana, Leaf C. Boswell, Daniel S. Moore, and Steven C. Hand
Adaptive processes drive ecomorphological convergent evolution in antwrens (Thamnophilidae), Gustavo A. Bravo, J. V. Remsen, and Robb T. Brumfield
Photoheterotrophic growth of Physcomitrella patens, Terry M. Bricker, Adam J. Bell, Lan Tran, Laurie K. Frankel, and Steven M. Theg
Recrystallization inhibition in ice due to ice binding protein activity detected by nuclear magnetic resonance, Jennifer R. Brown, Joseph D. Seymour, Timothy I. Brox, Mark L. Skidmore, Chen Wang, Brent C. Christner, Bing Hao Luo, and Sarah L. Codd
Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit, Jeremy M. Brown
Predictive approaches to assessing the fit of evolutionary models, Jeremy M. Brown
eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models, Michal Brylinski
Computational redesign of bacterial biotin carboxylase inhibitors using structure-based virtual screening of combinatorial libraries, Michal Brylinski and Grover L. Waldrop
Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds, Kevin J. Burns, Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, and Irby J. Lovette
Marine teleost locates live prey through pH sensing, John Caprio, Mami Shimohara, Takayuki Marui, Shuitsu Harada, and Sadao Kiyohara
Gibbon genome and the fast karyotype evolution of small apes, Lucia Carbone, R. Alan Harris, Sante Gnerre, Krishna R. Veeramah, Belen Lorente-Galdos, John Huddleston, Thomas J. Meyer, Javier Herrero, Christian Roos, Bronwen Aken, et al.
Social opportunity rapidly regulates expression of CRF and CRF receptors in the brain during social ascent of a teleost fish, Astatotilapia burtoni, Russ E. Carpenter, Karen P. Maruska, Lisa Becker, and Russell D. Fernald
Botanicals and translational medicine: a paradigm shift in research approach, William T. Cefalu, Z Elizabeth Floyd, Jacqueline M. Stephens, and David M. Ribnicky
Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus, Javier A. Ceja-Navarro, Nhu H. Nguyen, Ulas Karaoz, Stephanie R. Gross, Donald J. Herman, Gary L. Andersen, Thomas D. Bruns, and Jennifer Pett-Ridge
Adaptation to ephemeral habitat may overcome natural barriers and severe habitat fragmentation in a fire-dependent species, the Bachman's Sparrow (Peucaea aestivalis), Blain Cerame, James A. Cox, Robb T. Brumfield, James W. Tucker, and Sabrina S. Taylor
The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana, Prosanta Chakrabarty, Jacques A. Prejean, and Matthew L. Niemiller
Phenylalanine residues at the carboxyl terminus of the herpes simplex virus 1 UL20 membrane protein regulate cytoplasmic virion envelopment and infectious virus production, Anu-Susan Charles, Vladimir N. Chouljenko, Nithya Jambunathan, Ramesh Subramanian, Peter Mottram, and Konstantin G. Kousoulas
Iron and zinc binding activity of Escherichia coli topoisomerase I homolog YrdD, Zishuo Cheng, Guoqiang Tan, Wu Wang, Xiaolu Su, Aaron P. Landry, Jianxin Lu, and Huangen Ding
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences, V. Colonna, Q. Ayub, Y. Chen, L. Pagani, P. Luisi, M. Pybus, E. Garrison, Y. Xue, C. Tyler-Smith, G. R. Abecasis, et al.
Limited type I interferons and plasmacytoid dendritic cells during neonatal respiratory syncytial virus infection permit immunopathogenesis upon reinfection, Stephania A. Cormier, Bishwas Shrestha, Jordy Saravia, Greg I. Lee, Li Shen, John P. DeVincenzo, Young In Kim, and Dahui You
Maternal exposure to EPFR-containing PM predisposes to enhanced allergic asthma in offspring, S. Cormier, P. L. Wang, D. H. You, and J. Soravia
Comparative genomics reveals insights into avian genome evolution and adaptation, Guojie Correction Zhang, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, et al.
Geographic variation and phylogenetic relationships of Myiopagis olallai (Aves: Passeriformes; Tyrannidae), with the description of two new taxa from the Northern Andes, Andres M. Cuervo, F. Gary Stiles, Miguel Lentino, Robb T. Brumfield, and Elizabeth P. Derryberry
Metacom: An R package for the analysis of metacommunity structure, Tad Dallas
Nitrate enrichment alters a Daphnia-microparasite interaction through multiple pathways, Tad Dallas and John M. Drake
Relative importance of environmental, geographic, and spatial variables on zooplankton metacommunities, Tad Dallas and John M. Drake
Relative importance of host environment, transmission potential and host phylogeny to the structure of parasite metacommunities, Tad Dallas and Steven J. Presley
Plastid phylogenomics and green plant phylogeny: Almost full circle but not quite there, Charles C. Davis, Zhenxiang Xi, and Sarah Mathews
Evaluating summary statistics used to test for incomplete lineage sorting: Mito-nuclear discordance in the reef sponge Callyspongia vaginalis, Melissa B. DeBiasse, Bradley J. Nelson, and Michael E. Hellberg
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel, Olivier Delaneau, Jonathan Marchini, Gil A. McVeanh, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers, Anjali Gupta-Hinch, Zamin Iqbal, Iain Mathieson, et al.
Latitudinal variation of freeze tolerance in intertidal marine snails of the genus melampus (Gastropoda: Ellobiidae), A. B. Dennis, S. H. Loomis, and M. E. Hellberg
hzar: hybrid zone analysis using an R software package, Elizabeth P. Derryberry, Graham E. Derryberry, James M. Maley, and Robb T. Brumfield