Submissions from 2016
Loss of Oncostatin M Signaling in Adipocytes Induces Insulin Resistance and Adipose Tissue Inflammation in Vivo∗, Carrie M. Elks, Peng Zha, Ryan W. Grant, Hardy Hang, Jennifer L. Bailey, David H. Burk, Margaret A. McNulty, Randall L. Mynatt, and Jacqueline M. Stephens
Quantifying the spatiotemporal dynamics in a chorus frog (Pseudacris) hybrid zone over 30 years, Kristin N. Engebretsen, Lisa N. Barrow, Eric N. Rittmeyer, Jeremy M. Brown, and Emily Moriarty Lemmon
Identifying Conserved Genomic Elements and Designing Universal Probe Sets To Enrich Them, Brant C. Faircloth
GeauxDock: Accelerating structure-based virtual screening with heterogeneous computing, Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, and Michal Brylinski
Structure-based drug discovery accelerated by many-core devices, Wei Feinstein and Michal Brylinski
Mitogen-Dependent Regulation of DUSP1 Governs ERK and p38 Signaling During Early 3T3-L1 Adipocyte Differentiation, Bradley S. Ferguson, Heesun Nam, Jacqueline M. Stephens, and Ron F. Morrison
The negative effects of pathogen-infected prey on predators: a meta-analysis, Andrew J. Flick, Miguel A. Acevedo, and Bret D. Elderd
Targeting of the epidermal growth factor receptor with mesoporphyrin IX-peptide conjugates, Krystal R. Fontenot, Benson G. Ongarora, Logan E. LeBlanc, Zehua Zhou, Seetharama D. Jois, and M Graça Vicente
Coloration in the polymorphic frog Oophaga pumilio associates with level of aggressiveness in intraspecific and interspecific behavioral interactions, Sandra P. Galeano and Kyle E. Harms
Capsular polysaccharide production and serum survival of Vibrio vulnificus are dependent on antitermination control by RfaH, Shana B. Garrett, Katherine L. Garrison-Schilling, Jeffrey T. Cooke, and Gregg S. Pettis
Phylogenetics of extant and fossil Pinaceae: Methods for increasing topological stability, David S. Gernandt, Garth Holman, Christopher Campbell, Matthew Parks, Sarah Mathews, Linda A. Raubeson, Aaron Liston, Ruth A. Stockey, and Gar W. Rothwell
5-Lipoxygenase-activating protein rescues activity of 5-lipoxygenase mutations that delay nuclear membrane association and disrupt product formation, Jana Gerstmeier, Marcia E. Newcomer, Sophie Dennhardt, Erik Romp, Jana Fischer, Oliver Werz, and Ulrike Garscha
Use of sonic tomography to detect and quantify wood decay in living trees, Gregory S. Gilbert, Javier O. Ballesteros, Cesar A. Barrios-Rodriguez, Ernesto F. Bonadies, Marjorie L. Cedeño-Sánchez, Nohely J. Fossatti-Caballero, Mariam M. Trejos-Rodríguez, and José Moises Pérez-Suñiga
Capturing Darwin’s dream, T.C. Glenn and B.C. Faircloth
Three Distinct Glutamate Decarboxylase Genes in Vertebrates, Brian P. Grone and Karen P. Maruska
The potential role of polyamines in gill epithelial remodeling during extreme hypoosmotic challenges in the Gulf killifish, Fundulus grandis, Ying Guan, Guo xia Zhang, Shujun Zhang, Beau Domangue, and Fernando Galvez
Differential roles of two homologous cyclin-dependent kinase inhibitor genes in regulating cell cycle and innate immunity in arabidopsis1[OPEN], Safae Hamdoun, Chong Zhang, Manroop Gill, Narender Kumar, Michelle Churchman, John C. Larkin, Ashley Kwon, and Hua Lu
Mechanisms of animal diapause: Recent developments from nematodes, crustaceans, insects, and fish, Steven C. Hand, David L. Denlinger, Jason E. Podrabsky, and Richard Roy
Bovine herpesvirus type-1 glycoprotein K (gK) interacts with UL20 and is required for infectious virus production, Muzammel Haque, Brent Stanfield, and Konstantin G. Kousoulas
Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye, R.C. Harrington, B.C. Faircloth, R.I. Eytan, W.L. Smith, T.J. Near, M.E. Alfaro, and M. Friedman
Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics, Michael G. Harvey, Brian Tilston Smith, Travis C. Glenn, Brant C. Faircloth, and Robb T. Brumfield
An adenovirus-derived protein: A novel candidate for anti-diabetic drug development, Vijay Hegde, Ha Na Na, Olga Dubuisson, Susan J. Burke, J. Jason Collier, David Burk, Tamra Mendoza, and Nikhil V. Dhurandhar
Parental and sexual conflicts over the Peg3 imprinted domain, Hongzhi He, Bambarendage P.U. Perera, An Ye, and Joomyeong Kim
PEG3 interacts with KAP1 through KRAB-A, Hongzhi He, An Ye, Hana Kim, and Joomyeong Kim
Transcriptional truncation of the long coding imprinted gene Usp29, Hongzhi He, An Ye, and Joomyeong Kim
Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals, Michael E. Hellberg, Carlos Prada, Maxine H. Tan, Zac H. Forsman, and Iliana B. Baums
Hepatic autophagy contributes to the metabolic response to dietary protein restriction, Tara M. Henagan, Thomas Laeger, Alexandra M. Navard, Diana Albarado, Robert C. Noland, Krisztian Stadler, Carrie M. Elks, David Burk, and Christopher D. Morrison
Cultivation and genomics of the first freshwater SAR11 (LD12) isolate, Michael W. Henson, V. Celeste Lanclos, Brant C. Faircloth, and J. Cameron Thrash
Adapterama IV: Sequence Capture of Dual-digest RADseq Libraries with Identifiable Duplicates (RADcap), Sandra L. Hoffberg, Troy J. Kieran, Julian M. Catchen, Alison Devault, Brant C. Faircloth, Rodney Mauricio, and Travis C. Glenn
RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data, S.L. Hoffberg, T.J. Kieran, J.M. Catchen, A. Devault, B.C. Faircloth, R. Mauricio, and T.C. Glenn
Avoiding missing data biases in phylogenomic inference: An empirical study in the landfowl (Aves: Galliformes), P.A. Hosner, B.C. Faircloth, T.C. Glenn, E.L. Braun, and R.T. Kimball
TreeScaper: Visualizing and extracting phylogenetic signal from sets of trees, Wen Huang, Guifang Zhou, Melissa Marchand, Jeremy R. Ash, David Morris, Paul Van Dooren, Jeremy M. Brown, Kyle A. Gallivan, and Jim C. Wilgenbusch
Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni, Caroline K. Hu, Bruce R. Southey, Elena V. Romanova, Karen P. Maruska, Jonathan V. Sweedler, and Russell D. Fernald
Genome content and phylogenomics reveal both ancestral and lateral evolutionary pathways in plant-pathogenic Streptomyces species, Jose C. Huguet-Tapia, Tristan Lefebure, Jonathan H. Badger, Dongli Guan, Gregg S. Pettis, Michael J. Stanhope, and Rosemary Loria
The Two-Pore Potassium Channel Trek-1 Alters Inflammasome Activation In Alveolar Macrophages, C. N. Immanuel, J. A. Kennedy, B. Teng, C. Luellen, S. A. Cormier, E. A. Fitzpatrick, A. Schwingshackl, and C. M. Waters
Deletion of a predicted β-sheet domain within the amino terminus of herpes simplex virus glycoprotein K conserved among alphaherpesviruses prevents virus entry into neuronal axons, Nithya Jambunathan, Anu Susan Charles, Ramesh Subramanian, Ahmad A. Saied, Misagh Naderi, Paul Rider, Michal Brylinski, Vladimir N. Chouljenko, and Konstantin G. Kousoulas
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms, Daniel A. Janies, Zach Witter, Gregorio V. Linchangco, David W. Foltz, Allison K. Miller, Alexander M. Kerr, Jeremy Jay, and Robert W. Reid
Syntheses and cellular investigations of di-aspartate and aspartate-lysine chlorin e(6) conjugates, R G. Jinadasa, Zehua Zhou, M Graça Vicente, and Kevin M. Smith
N-terminal lipid modification is required for the stable accumulation of CyanoQ in Synechocystis sp. PCC 6803, Andrea D. Juneau, Laurie K. Frankel, Terry M. Bricker, and Johnna L. Roose
Discovery of Novel Nonactive Site Inhibitors of the Prothrombinase Enzyme Complex, Karan Kapoor, Nicole McGill, Cynthia B. Peterson, Harold V. Meyers, Michael N. Blackburn, and Jerome Baudry
Adaptation to climate change: trade-offs among responses to multiple stressors in an intertidal crustacean, Morgan W. Kelly, Melissa B. DeBiasse, Vidal A. Villela, Hope L. Roberts, and Colleen F. Cecola
Siah2 protein mediates early events in commitment to an adipogenic pathway, Gail Kilroy, David H. Burk, and Z. Elizabeth Floyd
Phylogenetic and epigenetic footprinting of the putative enhancers of the peg3 domain, Joomyeong Kim and An Ye
Plasma biomarker analysis in pediatric ARDS: Generating future framework from a pilot randomized control trial of methylprednisolone: A framework for identifying plasma biomarkers related to clinical outcomes in pediatric ARDS, Dai Kimura, Jordy Saravia, Cynthia R. Rovnaghi, Gianfranco Umberto Meduri, Andreas Schwingshackl, Stephania A. Cormier, and Kanwaljeet J. Anand
Urban microbiomes and urban agriculture: What are the connections and why should we care?, Gary M. King
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition), Daniel J. Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, and Christopher M. Adams
Differential plant invasiveness is not always driven by host promiscuity with bacterial symbionts, Metha M. Klock, Luke G. Barrett, Peter H. Thrall, and Kyle E. Harms
Discovery of a new repeat family in the Callithrix jacchus genome, Miriam Konkel, Mark Batzer, Brygg Ullmer, Erika L. Arceneaux, Sreeja Sanampudi, Sarah A. Brantley, Robert Hubley, and Arian F.A. Smit
Discovery of a new repeat family in the Callithrix jacchus genome, Miriam K. Konkel, Brygg Ullmer, Erika L. Arceneaux, Sreeja Sanampudi, Sarah A. Brantley, Robert Hubley, Arian F.A. Smit, and Mark A. Batzer
Uncoupling Caveolae from Intracellular Signaling in Vivo, Jan R. Kraehling, Zhengrong Hao, Monica Y. Lee, David J. Vinyard, Heino Velazquez, Xinran Liu, Radu V. Stan, Gary W. Brudvig, and William C. Sessa
Carbon Fixation Driven by Molecular Hydrogen Results in Chemolithoautotrophically Enhanced Growth of Helicobacter pylori, Lisa G. Kuhns, Stéphane L. Benoit, Krishnareddy Bayyareddy, Darryl Johnson, Ron Orlando, Alexandra L. Evans, Grover L. Waldrop, and Robert J. Maier
Identiication of essential arginine residues of Escherichia coli DedA/Tvp38 family membrane proteins YqjA and YghB, Sujeet Kumar, Cersten L. Bradley, Patience Mukashyaka, and William T. Doerrler
Description of Teunomyces gen. nov. for the Candida kruisii clade, Suhomyces gen. nov. for the Candida tanzawaensis clade and Suhomyces kilbournensis sp. nov, Cletus P. Kurtzman, Christie J. Robnett, and Meredith Blackwell
The abiotic and biotic drivers of rapid diversification in Andean bellflowers (Campanulaceae), Laura P. Lagomarsino, Fabien L. Condamine, Alexandre Antonelli, Andreas Mulch, and Charles C. Davis
The abiotic and biotic drivers of rapid diversification in Andean bellflowers (Campanulaceae), Laura P. Lagomarsino, Fabien L. Condamine, Alexandre Antonelli, Andreas Mulch, and Charles C. Davis
Two new species of Siphocampylus (Campanulaceae, Lobelioideae) from the Central Andes, Laura P. Lagomarsino and Daniel Santamaría-Aguilar
Two new species of Siphocampylus (Campanulaceae, Lobelioideae) from the Central Andes, Laura P. Lagomarsino and Daniel Santamaría-Aguilar
A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures, Bliss Lambert, Maheshi Dassanayake, Dong Ha Oh, Shana B. Garrett, Sang Yeol Lee, and Gregg S. Pettis
Does corticosterone regulate the onset of breeding in free-living birds?: The CORT-Flexibility Hypothesis and six potential mechanisms for priming corticosteroid function, Christine R. Lattin, Creagh W. Breuner, and L. Michael Romero
NGS-based deep bisulfite sequencing, Suman Lee and Joomyeong Kim
Discordant coral–symbiont structuring: factors shaping geographical variation of Symbiodinium communities in a facultative zooxanthellate coral genus, Oculina, Karine Posbic Leydet and Michael E. Hellberg
Long-term shifts in the patterns and underlying processes of plant associations in Wisconsin forests, Daijiang Li and Donald Waller
Evolutionary aspects of plant photoreceptors, Fay Wei Li and Sarah Mathews
Evolutionary innovation and diversification of carotenoid-based pigmentation in finches, Russell A. Ligon, Richard K. Simpson, Nicholas A. Mason, Geoffrey E. Hill, and Kevin J. McGraw
Response of salt marshes to oiling from the Deepwater Horizon spill: Implications for plant growth, soil surface-erosion, and shoreline stability, Qianxin Lin, Irving A. Mendelssohn, Sean A. Graham, Aixin Hou, John W. Fleeger, and Donald R. Deis
A [3Fe-4S] cluster is required for tRNA thiolation in archaea and eukaryotes, Yuchen Liu, David J. Vinyard, Megan E. Reesbeck, Tateki Suzuki, Kasidet Manakongtreecheep, Patrick L. Holland, Gary W. Brudvig, and Dieter Söll
Sen1, the yeast homolog of human senataxin, plays a more direct role than Rad26 in transcription coupled DNA repair, Wentao Li, Kathiresan Selvam, Sheikh A. Rahman, and Shisheng Li
Is exposure to Macondo oil reflected in the otolith chemistry of marsh-resident fish?, Paola C. López-Duarte, F. Joel Fodrie, Olaf P. Jensen, Andrew Whitehead, Fernando Galvez, Benjamin Dubansky, and Kenneth W. Able
Comparison of electrophysiological auditory measures in fishes, Karen P. Maruska and Joseph A. Sisneros
The Thr–His Connection on the Distal Heme of Catalase-Related Hemoproteins: A Hallmark of Reaction with Fatty Acid Hydroperoxides, Zahra Mashhadi, Marcia E. Newcomer, and Alan R. Brash
Membership trends in the American Ornithologists' Union and the evolving role of professional ornithological societies, Nicholas A. Mason, Michael W. Butler, and Jennifer C. Owen
Sequence capture of ultraconserved elements from bird museum specimens, J.E. McCormack, W.L.E. Tsai, and B.C. Faircloth
Isolation and characterization of extremely halophilic CO-oxidizing Euryarchaeota from hypersaline cinders, sediments and soils and description of a novel CO oxidizer, Haloferax namakaokahaiae Mke2.3T, sp. nov., S. McDuff, G. M. King, S. Neupane, and M. R. Myers
Replicated divergence in cichlid radiations mirrors a major vertebrate innovation, M.D. McGee, B.C. Faircloth, S.R. Borstein, J. Zheng, C.D. Hulsey, P.C. Wainwright, and M.E. Alfaro
Analysis of a rapid evolutionary radiation using ultraconserved elements: Evidence for a bias in some multispecies coalescent methods, K.A. Meiklejohn, B.C. Faircloth, T.C. Glenn, R.T. Kimball, and E.L. Braun
Modularity: Genes, Development, and Evolution, Diogo Melo, Arthur Porto, James M. Cheverud, and Gabriel Marroig
Do ploidy level and nuclear genome size and latitude of origin modify the expression of Phragmites australis traits and interactions with herbivores?, Laura A. Meyerson, James T. Cronin, Ganesh P. Bhattarai, Hans Brix, Carla Lambertini, Magdalena Lučanová, Shelby Rinehart, Jan Suda, and Petr Pyšek
Phragmites australis as a model organism for studying plant invasions, Laura A. Meyerson, James T. Cronin, and Petr Pyšek
THE DYNAMICS OF RESPIRATORY SYNCYTIAL VIRUS (RSV) REPLICATION REVEALS AN AGE-RELATED FUNCTIONAL MATURATION OF THE INFANT ANTIVIRAL IMMUNE RESPONSE, C. R. Miller, A. Shah, L. Harrison, E. Meals, C. Hyrne, B. Bagga, Y. Kim-Hoehamer, L. Benhabiles, S. Cormier, and J. DeVincenzo
A test of biological trait analysis with nematodes and an anthropogenic stressor, Hanan M. Mitwally and John W. Fleeger
Cryopreservation of lipid bilayers by LEA proteins from Artemia franciscana and trehalose, Daniel S. Moore and Steven C. Hand
Liposomes with diverse compositions are protected during desiccation by LEA proteins from Artemia franciscana and trehalose, Daniel S. Moore, Richard Hansen, and Steven C. Hand
Tectonic collision and uplift of Wallacea triggered the global songbird radiation, R.G. Moyle, C.H. Oliveros, M.J. Andersen, P.A. Hosner, B.W. Benz, J.D. Manthey, S.L. Travers, R.M. Brown, and B.C. Faircloth
INFANT MUCOSAL RSV-SPECIFIC IGA RESPONSE DYNAMICS DURING AND AFTER INFECTION, N. Mulroy, J. DeVincenzo, B. Bagga, E. Meals, L. Harrison, B. Sealy, J. Hurwitz, L. Benhabilies, S. Cormier, and D. R. Hijano
Use of Protein Cross-Linking and Radiolytic Labeling to Elucidate the Structure of PsbO within Higher-Plant Photosystem II, Manjula P. Mummadisetti, Laurie K. Frankel, Henry D. Bellamy, Larry Sallans, Jost S. Goettert, Michal Brylinski, and Terry M. Bricker
Use of Protein Cross-Linking and Radiolytic Labeling to Elucidate the Structure of PsbO within Higher-Plant Photosystem II, Manjula P. Mummadisetti, Laurie K. Frankel, Henry D. Bellamy, Larry Sallans, Jost S. Goettert, Michal Brylinski, and Terry M. Bricker
Isolation and characterization of Acidobacterium ailaaui sp. Nov., a novel member of Acidobacteria subdivision 1, from a geothermally heated Hawaiian microbial mat, Marisa R. Myers and G. M. King
A graph-based approach to construct target-focused libraries for virtual screening, Misagh Naderi, Chris Alvin, Yun Ding, Supratik Mukhopadhyay, and Michal Brylinski
E4orf1 Enhances Glucose Uptake Independent of Proximal Insulin Signaling, Ha-Na Na, Vijay Hegde, Olga Dubuisson, and Nikhil V. Dhurandhar
Modulation of IL-27 in adipocytes during inflammatory stress, Heesun Nam, Bradley S. Ferguson, Jacqueline M. Stephens, and Ron F. Morrison
Correlates of sociometric status in Russian preschoolers: Aggression, victimization, and sociability, David A. Nelson, Kathryn C. Burner, Sarah M. Coyne, Craig H. Hart, and Clyde C. Robinson
Smoking cessation counseling in vascular surgical practice using the results of interviews and focus groups in the Vascular Surgeon offer and report smoking cessation pilot trial, Karina Newhall, Mary Burnette, Benjamin S. Brooke, Andres Schanzer, TzeWoei Tan, Susan Flocke, Alik Farber, and Philip Goodney
Sequence capture and next-generation sequencing of ultraconserved elements in a large-genome salamander, Catherine E. Newman and Christopher C. Austin
An extract of Urtica dioica L. mitigates obesity induced insulin resistance in mice skeletal muscle via protein phosphatase 2A (PP2A), Diana N. Obanda, David Ribnicky, Yongmei Yu, Jacqueline Stephens, and William T. Cefalu
Stinging nettle (Urtica dioica L.) attenuates FFA induced ceramide accumulation in 3T3- L1 adipocytes in an adiponectin dependent manner, Diana N. Obanda, Peng Zhao, Allison J. Richard, David Ribnicky, William T. Cefalu, and Jacqueline M. Stephens
Effect of Different Fluids on Rectified Motion of Leidenfrost Droplets on Micro/Sub-Micron Ratchets, Jeong Tae Ok, Junseo Choi, Emily Brown, and Sunggook Park
Willet be one species or two? A genomic view of the evolutionary history of Tringa semipalmata, Jessica A. Oswald, Michael G. Harvey, Rosalind C. Remsen, Depaul U. Foxworth, Steven W. Cardiff, Donna L. Dittmann, Libby C. Megna, Matthew D. Carling, and Robb T. Brumfield
Experimental inoculation of Louisiana red swamp crayfish Procambarus clarkii with white spot syndrome virus (WSSV), Barcley T. Pace, John P. Hawke, Ramesh Subramanian, and Christopher C. Green
Physiological plasticity and local adaptation to elevated pCO2 in calcareous algae: an ontogenetic and geographic approach, Jacqueline L. Padilla-Gamiño, Juan Diego Gaitán-Espitia, Morgan W. Kelly, and Gretchen E. Hofmann
The high mobility group protein HMO1 functions as a linker histone in yeast, Arvind Panday and Anne Grove