Submissions from 2018
Genome‐wide signals of drift and local adaptation during rapid lineage divergence in a songbird, Guillermo Friis, Guillermo Fandos, Amanda J. Zellmer, John E. McCormack, Brant C. Faircloth, and Borja Milá
Endocannabinoid Metabolome Characterization of Transitional and Mature Human Milk, Adriana V. Gaitán, JodiAnne T. Wood, Fan Zhang, Alexandros Makriyannis, and Carol J. Lammi-Keefe
The polyphyly of Plasmodium: Comprehensive phylogenetic analyses of the malaria parasites (Order Haemosporida) reveal widespread taxonomic conflict, Spencer C. Galen, Janus Borner, Ellen S. Martinsen, Juliane Schaer, Christopher C. Austin, Christopher J. West, and Susan L. Perkins
Expression of an 8R-Lipoxygenase From the Coral Plexaura homomalla, Nathaniel C. Gilbert, David B. Neau, and Marcia E. Newcomer
Comparative assessment of strategies to identify similar ligand-binding pockets in proteins, Rajiv Gandhi Govindaraj and Michal Brylinski
Large-scale computational drug repositioning to find treatments for rare diseases, Rajiv Gandhi Govindaraj, Misagh Naderi, Manali Singha, Jeffrey Lemoine, and Michal Brylinski
The causes of disproportionate non-random mortality among life-cycle stages, Peter T. Green and Kyle E. Harms
Control of RNA polymerase II-transcribed genes by direct binding of TOR kinase, Anne Grove
Challenges during diapause and anhydrobiosis: Mitochondrial bioenergetics and desiccation tolerance, Steven C. Hand, Daniel S. Moore, and Yuvraj Patil
Advancing dendrochronological studies of fire in the United States, Grant L. Harley, Christopher H. Baisan, Peter M. Brown, Donald A. Falk, William T. Flatley, Henri D. Grissino-Mayer, Amy Hessl, Emily K. Heyerdahl, Margot W. Kaye, Charles W. Lafon, et al.
Particulate matter containing environmentally persistent free radicals induces AhRdependent cytokine and reactive oxygen species production in human bronchial epithelial cells, Ashlyn C. Harmon, Valeria Y. Hebert, Stephania A. Cormier, Balamurugan Subramanian, James R. Reed, Wayne L. Backes, and Tammy R. Dugas
Phylogenetic taxon definitions for and, David S. Hibbett, Meredith Blackwell, Timothy Y. James, Joseph W. Spatafora, John W. Taylor, and Rytas Vilgalys
Type I Interferon Potentiates IgA Immunity to Respiratory Syncytial Virus Infection During Infancy, Diego R. Hijano, David T. Siefker, Bishwas Shrestha, Sridhar Jaligama, Luan D. Vu, Heather Tillman, David Finkelstein, Jordy Saravia, Dahui You, and Stephania A. Cormier
P3: Phylogenetic posterior prediction in RevBayes, Sebastian Höhna, Lyndon M. Coghill, Genevieve G. Mount, Robert C. Thomson, and Jeremy M. Brown
The interface between the EGF1 and EGF2 domains is critical in integrin affinity regulation, Ping Hu and Bing-Hao Luo
TREK1 Deficiency Abrogates LPS-Induced Alveolar Macrophage Inflammasome Priming and Activation, C. N. Immanuel, B. Teng, B. Dong, J. Kennedy, J. Tatum, C. Luellen, E. A. Fitzpatrick, S. Cormier, A. Schwingshackl, and C. M. Waters
rr2: An R package to calculate $R^2$s for regression models, Anthony Ives and Daijiang Li
Radical containing combustion derived particulate matter enhance pulmonary Th17 inflammation via the aryl hydrocarbon receptor, Sridhar Jaligama, Vivek S. Patel, Pingli Wang, Asmaa Sallam, Jeffrey Harding, Matthew Kelley, Skylar R. Mancuso, Tammy R. Dugas, and Stephania A. Cormier
Relief of the Dma1-mediated checkpoint requires Dma1 autoubiquitination and dynamic localization, Christine M. Jones, Jun Song Chen, Alyssa E. Johnson, Zachary C. Elmore, Sierra N. Cullati, Janel R. Beckley, and Kathleen L. Gould
A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms, Vallmer E. Jordan, Jerilyn A. Walker, Thomas O. Beckstrom, Cody J. Steely, Cullen L. McDaniel, Corey P. St Romain, Kim C. Worley, Jane Phillips-Conroy, Clifford J. Jolly, Jeffrey Rogers, et al.
Morphological And Genetic Variation Across A Narrow Hybrid Zone Between Jamaican Endemic Streamertail Hummingbirds (Trochilus Polytmus And T. Scitulus), C D. Judy, R T. Brumfield, and G R. Graves
Halophytism: What Have We Learnt From Arabidopsis thaliana Relative Model Systems?, Yana Kazachkova, Gil Eshel, Pramod Pantha, John M. Cheeseman, Maheshi Dassanayake, and Simon Barak
Ablation of Ezh2 in neural crest cells leads to aberrant enteric nervous system development in mice, Hana Kim, Ingeborg M. Langohr, Mohammad Faisal, Margaret McNulty, Caitlin Thorn, and Joomyeong Kim
Microbial community structure and functional potential of lava-formed Gotjawal soils in Jeju, Korea, Jong Shik Kim, Dae Shin Kim, Keun Chul Lee, Jung Sook Lee, Gary M. King, and Sanghoon Kang
Enhancer-driven alternative promoters of imprinted genes, Joomyeong Kim, Bambarendage P.U. Perera, and Subash Ghimire
New mouse model of pulmonary hypertension induced by respiratory syncytial virus bronchiolitis, Dai Kimura, Jordy Saravia, Sridhar Jaligama, Isabella McNamara, Luan D. Vu, Ryan D. Sullivan, Salvatore Mancarella, Dahui You, and Stephania A. Cormier
Microbiomes of the Enteropneust, , and Associated Marine Intertidal Sediments of Cod Cove, Maine, Gary M. King
Identification and optimization of soluble epoxide hydrolase inhibitors with dual potency towards fatty acid amide hydrolase, Sean D. Kodani, Saavan Bhakta, Sung Hee Hwang, Svetlana Pakhomova, Marcia E. Newcomer, Christophe Morisseau, and Bruce D. Hammock
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness, Ting Kuang, Luke Tornabene, Jingyan Li, Jiamei Jiang, Prosanta Chakrabarty, John S. Sparks, Gavin J.P. Naylor, and Chenhong Li
Functional analysis of short linear motifs in the plant cyclin-dependent kinase inhibitor SIAMESE, Narender Kumar, Renee Dale, Daniel Kemboi, Elizabeth A. Zeringue, Naohiro Kato, and John C. Larkin
A 3D-printed modular device for imaging the brain of small birds, C.R. Lattin, M.A. Emerson, J.-D. Gallezot, T. Mulnix, J.E. Brown, and R.E. Carson
An Amazonian rainforest and its fragments as a laboratory of global change, William F. Laurance, José L. Camargo, Philip M. Fearnside, Thomas E. Lovejoy, G Bruce Williamson, Rita C. Mesquita, Christoph F. Meyer, and Paulo E. Bobrowiec
Endothelial Cell Autonomous Role of Akt1, Monica Y. Lee, Ana Gamez-Mendez, Jiasheng Zhang, Zhenwu Zhuang, David J. Vinyard, Jan Kraehling, Heino Velazquez, Gary W. Brudvig, Themis R. Kyriakides, Michael Simons, et al.
An overview of extant conifer evolution from the perspective of the fossil record, Andrew B. Leslie, Jeremy Beaulieu, Garth Holman, Christopher S. Campbell, Wenbin Mei, Linda R. Raubeson, and Sarah Mathews
Host-targeted rad-seq reveals genetic changes in the coral oculina patagonica associated with range expansion along the spanish mediterranean coast, Karine Posbic Leydet, Carsten G.B. Grupstra, Rafel Coma, Marta Ribes, and Michael E. Hellberg
hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers, Daijiang Li
Species richness and phylogenetic diversity of native and non-native species respond differently to area and environmental factors, Daijiang Li, William B. Monahan, and Benjamin Baiser
Homogenization of species composition and species association networks are decoupled, Daijiang Li, Timothée Poisot, Donald M. Waller, and Benjamin Baiser
NKG2D regulation of lung pathology and dendritic cell function following respiratory syncytial virus infection, Huan Liu, Andrew R. Osterburg, Jennifer Flury, Shuo Huang, Francis X. McCormack, Stephania A. Cormier, and Michael T. Borchers
Electron transfer kinetics of the mitochondrial outer membrane protein mitoNEET, X. Li, Y. Wang, G. Tan, J. Lyu, and H. Ding
Transgene-assisted genetic screen identifies rsd-6 and novel genes as key components of antiviral RNA interference in Caenorhabditis elegans, Tianyun Long, Fei Meng, and Rui Lu
A quantitative and statistical biological comparison of three semi-enclosed seas: the Red Sea, the Persian (Arabian) Gulf, and the Gulf of California, William B. Ludt, Link Morgan, James Bishop, and Prosanta Chakrabarty
Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae), Limin Lu, Cymon J. Cox, Sarah Mathews, Wei Wang, Jun Wen, and Zhiduan Chen
Carbon fixation: Closing the circle, Marylou C. Machingura and James V. Moroney
TRPC5 is required for the NO-dependent increase in dendritic Ca 2+ and GABA release from chick retinal amacrine cells, J. Wesley Maddox, Nikka Khorsandi, and Evanna Gleason
Using a phiC31 "disintegrase" to make new attP sites in the Drosophila genome at locations showing chromosomal position effects, Mukesh Maharjan, Robert K. Maeda, François Karch, and Craig M. Hart
Astatotilapia burtoni: A Model System for Analyzing the Neurobiology of Behavior, Karen P. Maruska and Russell D. Fernald
Hidden endemism, deep polyphyly, and repeated dispersal across the Isthmus of Tehuantepec: Diversification of the White-collared Seedeater complex (Thraupidae: Sporophila torqueola), Nicholas A. Mason, Arturo Olvera-Vital, Irby J. Lovette, and Adolfo G. Navarro-Sigüenza
Aldosterone Mediated Regulation of Epithelial Sodium Channel (ENaC) Subunits in the Rat Hypothalamus, Natalie J. Mills, Kaustubh Sharma, Masudul Haque, Meagan Moore, and Ryoichi Teruyama
Effect of dietary salt intake on epithelial Na+ channels (ENaCs) in the hypothalamus of Dahl salt-sensitive rats, Natalie J. Mills, Kaustubh Sharma, Katie Huang, and Ryoichi Teruyama
Energy Expenditure in Pregnant Women with Obesity Does Not Support Energy Intake Recommendations, Jasper Most, Porsha M. Vallo, L Anne Gilmore, Marshall St Amant, Daniel S. Hsia, Abby D. Altazan, Robbie A. Beyl, and Eric Ravussin
eModel-BDB: a database of comparative structure models of drug-target interactions from the Binding Database, Misagh Naderi, Rajiv Gandhi Govindaraj, and Michal Brylinski
The dual role of Amazonian rivers in the generation and maintenance of avian diversity, Luciano N. Naka and Robb T. Brumfield
NextGen VOICES: Research resolutions, Felicia Olmeta-Schult, Lauren Massa Segal, Sam Tyner, Twila Alexandra Moon, Ryan Dz Wei Chow, Prosanta Chakrabarty, Martin Pacesa, Anna Igorevna Podgornaia, Jennifer Chen, Bipin Singh, et al.
Modeling the influence of eutrophication and redox conditions on Mercury cycling at the sediment-water interface in the Berre lagoon, Svetlana Pakhomova, Evgeniy Yakushev, Elizaveta Protsenko, Sylvain Rigaud, Daniel Cossa, Joel Knoery, Raoul Marie Couture, Olivier Radakovitch, Shamil Yakubov, Dominika Krzeminska, et al.
Gene regulation by redox-sensitive Burkholderia thailandensis OhrR and its role in bacterial killing of Caenorhabditis elegans, Anuja Pande, Todd C. Veale, and Anne Grove
Characterizing the phylogenetic specialism-generalism spectrum of mammal parasites, A. W. Park, M. J. Farrell, J. P. Schmidt, S. Huang, T. A. Dallas, P. Pappalardo, J. M. Drake, P. R. Stephens, R. Poulin, C. L. Nunn, et al.
Genome-wide linkage scan for loci influencing plasma triglyceride levels, Juan M. Peralta, Nicholas B. Blackburn, Arthur Porto, John Blangero, and Jac Charlesworth
Circular RNA identified from Peg3 and Igf2r, Bambarendage P.U. Perera, Subash Ghimire, and Joomyeong Kim
Global environmental change effects on plant community composition trajectories depend upon management legacies, Michael P. Perring, Markus Bernhardt-Römermann, Lander Baeten, Gabriele Midolo, Haben Blondeel, Leen Depauw, Dries Landuyt, Sybryn L. Maes, Emiel De Lombaerde, Maria Mercedes Carón, et al.
Understanding context dependency in the response of forest understorey plant communities to nitrogen deposition, Michael P. Perring, Martin Diekmann, Gabriele Midolo, David Schellenberger Costa, Markus Bernhardt-Römermann, Johanna C.J. Otto, Frank S. Gilliam, Per Ola Hedwall, Annika Nordin, Thomas Dirnböck, et al.
Spreading the news about the novel conjugation mechanism in Streptomyces bacteria, Gregg S. Pettis
Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats, Roy N. Platt, Brant C. Faircloth, Kevin A. Sullivan, Troy J. Kieran, Travis C. Glenn, Michael W. Vandewege, Thomas E. Lee, and Robert J. Baker
Adult energy requirements predicted from doubly labeled water, Andrew Plucker, Diana M. Thomas, Nick Broskey, Corby K. Martin, Dale Schoeller, Robin Shook, Steven B. Heymsfield, and James A. Levine
Variational Approaches to Evolvability: Short- and Long-Term Perspectives, Arthur Porto
Reliability of genomic predictions of complex human phenotypes, Arthur Porto, Juan M. Peralta, Nicholas B. Blackburn, and John Blangero
Universal target‐enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long‐standing problems, Andrea M. Quattrini, Brant C. Faircloth, Luisa F. Dueñas, Tom C. L. Bridge, Mercer R. Brugler, Iván F. Calixto‐Botía, Danielle M. DeLeo, Sylvain Forêt, Santiago Herrera, Simon M. Y. Lee, et al.
Linear Bidentate Ligands (L) with Two Terminal Pyridyl N-Donor Groups Forming Pt(II)LCl2 Complexes with Rare Eight-Membered Chelate Rings, Kokila Ranasinghe, Patricia A. Marzilli, Svetlana Pakhomova, and Luigi G. Marzilli
Biogeography and diversification of Rhegmatorhina (Aves: Thamnophilidae): Implications for the evolution of Amazonian landscapes during the Quaternary, Camila C. Ribas, Alexandre Aleixo, Chrysoula Gubili, Fernando M. d'Horta, Robb T. Brumfield, and Joel Cracraft
Biogeography And Diversification Of Rhegmatorhina (Aves: Thamnophilidae): Implications For The Evolution Of Amazonian Landscapes During The Quaternary, C C. Ribas, A Aleixo, C Gubili, F M. d'Horta, C C. Ribas, and J Cracraft
Variation Across Mitochondrial Gene Trees Provides Evidence For Systematic Error: How Much Gene Tree Variation Is Biological?, E J. Richards, J M. Brown, A J. Barley, R A. Chong, and E J. Richards
Variation Across Mitochondrial Gene Trees Provides Evidence For Systematic Error: How Much Gene Tree Variation Is Biological?, E J. Richards, J M. Brown, A J. Barley, R A. Chong, and E J. Richards
Variation across mitochondrial gene trees provides evidence for systematic error: How much gene tree variation is biological?, Emilie J. Richards, Jeremy M. Brown, Anthony J. Barley, Rebecca A. Chong, and Robert C. Thomson
First Impressions-the Potential of Altering Initial Host-Virus Interactions for Rational Design of Herpesvirus Vaccine Vectors, Paul J. Rider, Farhana Musarrat, Rafiq Nabil, Shan Naidu, and Konstantin G. Kousoulas
Host and Symbionts in Pocillopora damicornis Larvae Display Different Transcriptomic Responses to Ocean Acidification and Warming, Emily B. Rivest, Morgan W. Kelly, Melissa B. DeBiasse, and Gretchen E. Hofmann
Multiple origins of green blood in New Guinea lizards, Zachary B. Rodriguez, Susan L. Perkins, and Christopher C. Austin
Cambial Phenology Informs Tree-Ring Analysis of Fire Seasonality in Coastal Plain Pine Savannas, Monica T. Rother, Jean M. Huffman, Grant L. Harley, William J. Platt, Neil Jones, Kevin M. Robertson, and Steve L. Orzell
Cryptic and non-cryptic diversity in New Guinea ground snakes of the genus Stegonotus Duméril, Bibron and Duméril, 1854: a description of four new species (Squamata: Colubridae), Sara Ruane, Stephen J. Richards, John D. McVay, Burhan Tjaturadi, Keliopas Krey, and Christopher C. Austin
Proximity ligation assay to study protein-protein interactions of proteins on two different cells, Rushikesh Sable, Nithya Jambunathan, Sitanshu Singh, Sandeep Pallerla, Konstantin G. Kousoulas, and Seetharama Jois
Isolation by distance, not incipient ecological speciation, explains genetic differentiation in an Andean songbird (Aves: Furnariidae: Cranioleuca antisiensis, Line-cheeked Spinetail) despite near threefold body size change across an environmental gradient, Glenn F. Seeholzer and Robb T. Brumfield
The Mediating Role of Korean Immigrant Mothers’ Psychological Well-Being in the Associations between Social Support and Authoritarian Parenting Style, You Jung Seo, Charissa S.L. Cheah, Sevgi Bayram Özdemir, Craig H. Hart, Christy Y.Y. Leung, and Shuyan Sun
Community assembly of the ferns of Florida, Emily B. Sessa, Sally M. Chambers, Daijiang Li, Lauren Trotta, Lorena Endara, J. Gordon Burleigh, and Benjamin Baiser
4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin, Shraddha Shrestha, Dong Ha Oh, J. Keller McKowen, Maheshi Dassanayake, and Craig M. Hart
Structural modification of the tripeptide KPV by reductive “glycoalkylation” of the lysine residue, Abigael C. Songok, Pradip Panta, William T. Doerrler, Megan A. Macnaughtan, and Carol M. Taylor
Optimizing photorespiration for improved crop productivity, Paul F. South, Amanda P. Cavanagh, Patricia E. Lopez-Calcagno, Christine A. Raines, and Donald R. Ort
Intramuscular vaccination of guinea pigs with the live-attenuated human herpes simplex vaccine VC2 stimulates a transcriptional profile of vaginal Th17 and regulatory Tr1 responses, Brent A. Stanfield, Paul J. Rider, John Caskey, Fabio Del Piero, and Konstantin G. Kousoulas
Perspective: Sistas In Science - Cracking the Glass Ceiling, Athena Starlard-Davenport, Alisa Rich, Titilope Fasipe, Eboni I. Lance, Kehinde Adekola, Ariadna Forray, Mesia Steed, and Ashley Fitzgerald
Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis, Cody J. Steely, Jasmine N. Baker, Jerilyn A. Walker, Charles D. Loupe, Mark A. Batzer, Jeffrey Rogers, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, et al.
Adipose Tissue Dysfunction Occurs Independently of Obesity in Adipocyte-Specific Oncostatin Receptor Knockout Mice, Jacqueline M. Stephens, Jennifer L. Bailey, Hardy Hang, Victoria Rittell, Marilyn A. Dietrich, Randall L. Mynatt, and Carrie M. Elks
Fibroblast growth factor 21, adiposity, and macronutrient balance in a healthy, pregnant population with overweight and obesity, Elizabeth F. Sutton, Christopher D. Morrison, Jacqueline M. Stephens, and Leanne M. Redman
Natively oxidized amino acid residues in the spinach cytochrome b6 f complex, Ryan M. Taylor, Larry Sallans, Laurie K. Frankel, and Terry M. Bricker
Misrepresentation of the Pennington Biomedical Research Center Weight Loss Predictor, Diana M. Thomas, Krista Watts, Jonathan Roginski, Corby K. Martin, Steven Heymsfield, Leanne M. Redman, and Dale A. Schoeller
Community phylogeny of the globally critically imperiled pine rockland ecosystem, Lauren B. Trotta, Benjamin Baiser, Jennifer Possley, Daijiang Li, James Lange, Sarah Martin, and Emily B. Sessa
Environmentally Persistent Free Radicals: Insights on a New Class of Pollutants, Eric P. Vejerano, Guiying Rao, Lavrent Khachatryan, Stephania A. Cormier, and Slawo Lomnicki
Why species delimitation matters for fungal ecology: Colletotrichum diversity on wild and cultivated cashew in Brazil, Josiene S. Veloso, Marcos P. Câmara, Waléria G. Lima, Sami J. Michereff, and Vinson P. Doyle
Desiccation tolerant lichens facilitate in vivo H/D isotope effect measurements in oxygenic photosynthesis, David J. Vinyard, Gennady M. Ananyev, and G. Charles Dismukes
REVISITING THE EVIDENCE FOR A PUNCTUATED MODE OF EVOLUTION IN METRARABDOTOS, Kjetil Lysne Voje, Emanuela Di Martino, and Arthur Porto
Elevated Periostin and NT-proBNP in Tracheal Aspirates Were Associated with Pulmonary Hypertension in Mechanically Ventilated Children with RSV Bronchiolitis, L. D. Vu, C. Ward, J. Devincenzo, R. Philip, S. A. Cormier, and D. Kimura
A Tale of Two Cycles, Kai Wang and John C. Larkin
The Absence of DHHC3 Affects Primary and Latent Herpes Simplex Virus 1 Infection, Shaohui Wang, Kevin R. Mott, Marianne Cilluffo, Casey L. Kilpatrick, Shoko Murakami, Alexander V. Ljubimov, Konstantin G. Kousoulas, and Sita Awasthi