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Submissions from 2018

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Variation across mitochondrial gene trees provides evidence for systematic error: How much gene tree variation is biological?, Emilie J. Richards, Jeremy M. Brown, Anthony J. Barley, Rebecca A. Chong, and Robert C. Thomson

First Impressions-the Potential of Altering Initial Host-Virus Interactions for Rational Design of Herpesvirus Vaccine Vectors, Paul J. Rider, Farhana Musarrat, Rafiq Nabil, Shan Naidu, and Konstantin G. Kousoulas

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Host and Symbionts in Pocillopora damicornis Larvae Display Different Transcriptomic Responses to Ocean Acidification and Warming, Emily B. Rivest, Morgan W. Kelly, Melissa B. DeBiasse, and Gretchen E. Hofmann

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Multiple origins of green blood in New Guinea lizards, Zachary B. Rodriguez, Susan L. Perkins, and Christopher C. Austin

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Cambial Phenology Informs Tree-Ring Analysis of Fire Seasonality in Coastal Plain Pine Savannas, Monica T. Rother, Jean M. Huffman, Grant L. Harley, William J. Platt, Neil Jones, Kevin M. Robertson, and Steve L. Orzell

Proximity ligation assay to study protein-protein interactions of proteins on two different cells, Rushikesh Sable, Nithya Jambunathan, Sitanshu Singh, Sandeep Pallerla, Konstantin G. Kousoulas, and Seetharama Jois

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Isolation by distance, not incipient ecological speciation, explains genetic differentiation in an Andean songbird (Aves: Furnariidae: Cranioleuca antisiensis, Line-cheeked Spinetail) despite near threefold body size change across an environmental gradient, Glenn F. Seeholzer and Robb T. Brumfield

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The Mediating Role of Korean Immigrant Mothers’ Psychological Well-Being in the Associations between Social Support and Authoritarian Parenting Style, You Jung Seo, Charissa S.L. Cheah, Sevgi Bayram Özdemir, Craig H. Hart, Christy Y.Y. Leung, and Shuyan Sun

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Community assembly of the ferns of Florida, Emily B. Sessa, Sally M. Chambers, Daijiang Li, Lauren Trotta, Lorena Endara, J. Gordon Burleigh, and Benjamin Baiser

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4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin, Shraddha Shrestha, Dong Ha Oh, J. Keller McKowen, Maheshi Dassanayake, and Craig M. Hart

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Structural modification of the tripeptide KPV by reductive “glycoalkylation” of the lysine residue, Abigael C. Songok, Pradip Panta, William T. Doerrler, Megan A. Macnaughtan, and Carol M. Taylor

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Optimizing photorespiration for improved crop productivity, Paul F. South, Amanda P. Cavanagh, Patricia E. Lopez-Calcagno, Christine A. Raines, and Donald R. Ort

Intramuscular vaccination of guinea pigs with the live-attenuated human herpes simplex vaccine VC2 stimulates a transcriptional profile of vaginal Th17 and regulatory Tr1 responses, Brent A. Stanfield, Paul J. Rider, John Caskey, Fabio Del Piero, and Konstantin G. Kousoulas

Perspective: Sistas In Science - Cracking the Glass Ceiling, Athena Starlard-Davenport, Alisa Rich, Titilope Fasipe, Eboni I. Lance, Kehinde Adekola, Ariadna Forray, Mesia Steed, and Ashley Fitzgerald

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Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis, Cody J. Steely, Jasmine N. Baker, Jerilyn A. Walker, Charles D. Loupe, Mark A. Batzer, Jeffrey Rogers, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, et al.

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Adipose Tissue Dysfunction Occurs Independently of Obesity in Adipocyte-Specific Oncostatin Receptor Knockout Mice, Jacqueline M. Stephens, Jennifer L. Bailey, Hardy Hang, Victoria Rittell, Marilyn A. Dietrich, Randall L. Mynatt, and Carrie M. Elks

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Fibroblast growth factor 21, adiposity, and macronutrient balance in a healthy, pregnant population with overweight and obesity, Elizabeth F. Sutton, Christopher D. Morrison, Jacqueline M. Stephens, and Leanne M. Redman

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Natively oxidized amino acid residues in the spinach cytochrome b6 f complex, Ryan M. Taylor, Larry Sallans, Laurie K. Frankel, and Terry M. Bricker

Misrepresentation of the Pennington Biomedical Research Center Weight Loss Predictor, Diana M. Thomas, Krista Watts, Jonathan Roginski, Corby K. Martin, Steven Heymsfield, Leanne M. Redman, and Dale A. Schoeller

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Community phylogeny of the globally critically imperiled pine rockland ecosystem, Lauren B. Trotta, Benjamin Baiser, Jennifer Possley, Daijiang Li, James Lange, Sarah Martin, and Emily B. Sessa

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Environmentally Persistent Free Radicals: Insights on a New Class of Pollutants, Eric P. Vejerano, Guiying Rao, Lavrent Khachatryan, Stephania A. Cormier, and Slawo Lomnicki

Why species delimitation matters for fungal ecology: Colletotrichum diversity on wild and cultivated cashew in Brazil, Josiene S. Veloso, Marcos P. Câmara, Waléria G. Lima, Sami J. Michereff, and Vinson P. Doyle

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Desiccation tolerant lichens facilitate in vivo H/D isotope effect measurements in oxygenic photosynthesis, David J. Vinyard, Gennady M. Ananyev, and G. Charles Dismukes

REVISITING THE EVIDENCE FOR A PUNCTUATED MODE OF EVOLUTION IN METRARABDOTOS, Kjetil Lysne Voje, Emanuela Di Martino, and Arthur Porto

Elevated Periostin and NT-proBNP in Tracheal Aspirates Were Associated with Pulmonary Hypertension in Mechanically Ventilated Children with RSV Bronchiolitis, L. D. Vu, C. Ward, J. Devincenzo, R. Philip, S. A. Cormier, and D. Kimura

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A Tale of Two Cycles, Kai Wang and John C. Larkin

The Absence of DHHC3 Affects Primary and Latent Herpes Simplex Virus 1 Infection, Shaohui Wang, Kevin R. Mott, Marianne Cilluffo, Casey L. Kilpatrick, Shoko Murakami, Alexander V. Ljubimov, Konstantin G. Kousoulas, and Sita Awasthi

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Thioglycosides Are Efficient Metabolic Decoys of Glycosylation that Reduce Selectin Dependent Leukocyte Adhesion, Shuen Shiuan Wang, Xuefeng Gao, Virginia del Solar, Xinheng Yu, Aristotelis Antonopoulos, Alan E. Friedman, Eryn K. Matich, G. Ekin Atilla-Gokcumen, Mehrab Nasirikenari, Joseph T. Lau, et al.

PULMONARY HYPERTENSION IN INFANTS WITH RSV BRONCHIOLITIS IS NOT ASSOCIATED WITH VIRAL LOAD, C. Ward, D. Kimura, S. Cormier, and A. Saini

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Cdk1-dependent phosphoinhibition of a formin-F-BAR interaction opposes cytokinetic contractile ring formation, Alaina H. Willet, K. Adam Bohnert, and Kathleen L. Gould

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event, Kevin Winker, Travis C. Glenn, and Brant C. Faircloth

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event, Kevin Winker, Travis C. Glenn, and Brant C. Faircloth

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event, Kevin Winker, Travis C. Glenn, and Brant C. Faircloth

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Transcriptomics reveal transgenerational effects in purple sea urchin embryos: Adult acclimation to upwelling conditions alters the response of their progeny to differential pCO2 levels, Juliet M. Wong, Kevin M. Johnson, Morgan W. Kelly, and Gretchen E Hofmann

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3D MRI Modeling of Thin and Spatially Complex Soft Tissue Structures without Shrinkage: Lamprey Myosepta as an Example, Bradley M. Wood, Guang Jia, Owen Carmichael, Kevin Mcklveen, and Dominique G. Homberger

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Fertilization influences the nutrient acquisition strategy of a nomadic vine in a lowland tropical forest understory, Carrie L. Woods, Saara J. DeWalt, Catherine L. Cardelús, Kyle E. Harms, Joseph B. Yavitt, and S. Joseph Wright

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Plant responses to fertilization experiments in lowland, species-rich, tropical forests, S. Joseph Wright, Benjamin L. Turner, Joseph B. Yavitt, Kyle E. Harms, Michael Kaspari, Edmund V.J. Tanner, Jelena Bujan, Eric A. Griffin, Jordan R. Mayor, Sarah C. Pasquini, et al.

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The 6xABRE synthetic promoter enables the spatiotemporal analysis of ABA-mediated transcriptional regulation, Rui Wu, Lina Duan, José L. Pruneda-Paz, Dong Ha Oh, Michael Pound, Steve Kay, and José R. Dinneny

Characterization of prostate cancer cell progression in zebrafish xenograft model, Wei Xu, Brittany A. Foster, Mackenzie Richards, Kenneth R. Bondioli, Girish Shah, and Christopher C. Green

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Pol I DNA polymerases stimulate DNA end-joining by Escherichia coli DNA ligase, Yanling Yang and Vince J. LiCata

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Preoptic leptin signaling modulates energy balance independent of body temperature regulation, Sangho Yu, Helia Cheng, Marie François, Emily Qualls-Creekmore, Clara Huesing, Yanlin He, Yanyan Jiang, Hong Gao, Yong Xu, Andrea Zsombok, et al.

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Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes, Sara Zahraeifard, Maryam Foroozani, Aliasghar Sepehri, Dong Ha Oh, Guannan Wang, Venkata Mangu, Bin Chen, Niranjan Baisakh, Maheshi Dassanayake, and Aaron P. Smith

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Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression, Qi Zhang, Dong Ha Oh, Sandra Feuer DiTusa, Mangu V. RamanaRao, Niranjan Baisakh, Maheshi Dassanayake, and Aaron P. Smith

Submissions from 2017

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STAT5-Interacting proteins: A synopsis of proteins that regulate STAT5 activity, Ashley A. Able, Jasmine A. Burrell, and Jacqueline M. Stephens

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Constructible sheaves on nilpotent cones in rather good characteristic, Pramod N. Achar, Anthony Henderson, Daniel Juteau, and Simon Riche

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Modular generalized Springer correspondence II: Classical groups, Pramod N. Achar, Anthony Henderson, Daniel Juteau, and Simon Riche

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Modular generalized Springer correspondence III: exceptional groups, Pramod N. Achar, Anthony Henderson, Daniel Juteau, and Simon Riche

Draft Genome Sequence of cf. , a Causal Agent of Cercospora Leaf Blight on Soybean, Sebastian Albu, Sandeep Sharma, Burton H. Bluhm, Paul P. Price, Raymond W. Schneider, and Vinson P. Doyle

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Complete mitochondrial genomes of three Neotropical sleeper gobies: Eleotris amblyopsis, E. picta and Hemieleotris latifasciata (Gobiiformes: Eleotridae), Fernando Alda, Alexandria J. Adams, W. Owen McMillan, and Prosanta Chakrabarty

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Biogeography of a plant invasion: drivers of latitudinal variation in enemy release, Warwick J. Allen, Laura A. Meyerson, David Cummings, John Anderson, Ganesh P. Bhattarai, and James T. Cronin

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Operation Damage Control: Exercise Training to Prevent Metabolic Damage from High-Fat Feeding, Timothy D. Allerton and Jacqueline M. Stephens

The role of hydrophobic silane coating on Si stamps in nanoimprint lithography, Alborz Amirsadeghi, Lance Brumfield, Junseo Choi, Emily Brown, Jae Jong Lee, and Sunggook Park

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Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): Implications for taxonomy and Plio-Pleistocene evolutionary history in Central America, Justin C. Bagley, Wilfredo A. Matamoros, Caleb D. Mcmahan, Michael Tobler, Prosanta Chakrabarty, and Jerald B. Johnson

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Evolution of Alu subfamily structure in the Saimiri lineage of new world monkeys, Jasmine N. Baker, Jerilyn A. Walker, John A. Vanchiere, Kacie R. Phillippe, Corey P. St Romain, Paulina Gonzalez-Quiroga, Michael W. Denham, Jackson R. Mierl, Miriam K. Konkel, and Mark A. Batzer

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Longitudinal analysis of a diversity support program in biology: A national call for further assessment, Cissy J. Ballen and Nicholas A. Mason

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Moving forward in circles: challenges and opportunities in modelling population cycles, Frédéric Barraquand, Stilianos Louca, Karen C. Abbott, Christina A. Cobbold, Flora Cordoleani, Donald L. DeAngelis, Bret D. Elderd, Jeremy W. Fox, Priscilla Greenwood, Frank M. Hilker, et al.

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Evolution of Alu Subfamily Structure in the Saimiri Lineage of New World Monkeys, Mark Batzer, Jasmine N. Baker, Jerilyn A. Walker, John A. Vanchiere, Kacie R. Philippe, Corey P. St. Romain, Paulina Gonzalez-Quiroga, Michael W. Denham, Jackson R. Mierl, and Miriam K. Konkel

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Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons, Mark Batzer, Cody J. Steely, Jerilyn A. Walker, Vallmer E. Jordan, Thomas O. Beckstrom, Cullen L. McDaniel, Corey P. St. Romain, Emily C. Bennett, Arianna Robichaux, Brooke N. Clement, et al.

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Papio Baboon Species Indicative Alu Elements, Mark Batzer, Jerilyn A. Walker, Vallmer E. Jordan, Cody J. Steely, Thomas O. Beckstrom, Cullen L. McDaniel, Corey P. St. Romain, Emily C. Bennett, Arianna Robichaux, Brooke N. Clement, et al.

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Mechanistic study of an improved Ni precatalyst for Suzuki-Miyaura reactions of aryl sulfamates: Understanding the role of Ni(I) species, Megan Mohadjer Beromi, Ainara Nova, David Balcells, Ann M. Brasacchio, Gary W. Brudvig, Louise M. Guard, Nilay Hazari, and David J. Vinyard

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Biogeography of a plant invasion: Genetic variation and plasticity in latitudinal clines for traits related to herbivory, Ganesh P. Bhattarai, Laura A. Meyerson, Jack Anderson, David Cummings, Warwick J. Allen, and James T. Cronin

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Geographic variation in apparent competition between native and invasive Phragmites australis, Ganesh P. Bhattarai, Laura A. Meyerson, and James T. Cronin

Made for Each Other: Ascomycete Yeasts and Insects, Meredith Blackwell

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Multiple LHCII antennae can transfer energy efficiently to a single Photosystem I, Inge Bos, Kaitlyn M. Bland, Lijin Tian, Roberta Croce, Laurie K. Frankel, Herbert van Amerongen, Terry M. Bricker, and Emilie Wientjes

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Lineage overwhelms environmental conditions in determining rhizosphere bacterial community structure in a cosmopolitan invasive plant, Jennifer L. Bowen, Patrick J. Kearns, Jarrett E.K. Byrnes, Sara Wigginton, Warwick J. Allen, Michael Greenwood, Khang Tran, Jennifer Yu, James T. Cronin, and Laura A. Meyerson

Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees, Michael G. Branstetter, Bryan N. Danforth, James P. Pitts, Brant C. Faircloth, Philip S. Ward, Matthew L. Buffington, Michael W. Gates, and Robert R. Kula

Dry habitats were crucibles of domestication in the evolution of agriculture in ants, Michael G. Branstetter, Ana Ješovnik, Jeffrey Sosa-Calvo, Michael W. Lloyd, Brant C. Faircloth, Seán G. Brady, and Ted R. Schultz

Enriching the ant tree of life: enhanced UCE bait set for genome‐scale phylogenetics of ants and other Hymenoptera, Michael G. Branstetter, John T. Longino, Philip S. Ward, Brant C. Faircloth, and Samantha Price

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The biogeography of sodium in Neotropical figs (Moraceae), Adriana Bravo and Kyle E. Harms

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Transcription-driven DNA methylation setting on the mouse Peg3 locus, Corey L. Bretz and Joomyeong Kim

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Epigenetic response of imprinted domains during carcinogenesis, Corey L. Bretz, Ingeborg M. Langohr, and Joomyeong Kim

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Prolonged viral replication and longitudinal viral dynamic differences among respiratory syncytial virus infected infants, Monica E. Brint, Joshua M. Hughes, Aditya Shah, Chelsea R. Miller, Lisa G. Harrison, Elizabeth A. Meals, Jacqueline Blanch, Charlotte R. Thompson, Stephania A. Cormier, and John P. DeVincenzo

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Bayes Factors Unmask Highly Variable Information Content, Bias, and Extreme Influence in Phylogenomic Analyses, Jeremy M. Brown and Robert C. Thomson

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A model for the ergosterol biosynthetic pathway in Chlamydomonas reinhardtii, Kristy M. Brumfield, Susan M. Laborde, and James V. Moroney

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Local alignment of ligand binding sites in proteins for polypharmacology and drug repositioning, Michal Brylinski

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Resolving distinct molecular origins for copper effects on PAI-1, Joel C. Bucci, Carlee S. McClintock, Yuzhuo Chu, Gregory L. Ware, Kayla D. McConnell, Joseph P. Emerson, and Cynthia B. Peterson

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Db / db Mice Exhibit Features of Human Type 2 Diabetes That Are Not Present in Weight-Matched C57BL/6J Mice Fed a Western Diet, Susan J. Burke, Heidi M. Batdorf, David H. Burk, Robert C. Noland, Adrianna E. Eder, Matthew S. Boulos, Michael D. Karlstad, and J. Jason Collier

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Oral Corticosterone Administration Reduces Insulitis but Promotes Insulin Resistance and Hyperglycemia in Male Nonobese Diabetic Mice, Susan J. Burke, Heidi M. Batdorf, Adrianna E. Eder, Michael D. Karlstad, David H. Burk, Robert C. Noland, Z. Elizabeth Floyd, and J. Jason Collier

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Swim bladder morphology changes with female reproductive state in the mouth-brooding African cichlid Astatotilapia burtoni, Julie M. Butler, Sarah M. Whitlow, Anwei P. Gwan, Prosanta Chakrabarty, and Karen P. Maruska

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Parasite biodiversity faces extinction and redistribution in a changing climate, Colin J. Carlson, Kevin R. Burgio, Eric R. Dougherty, Anna J. Phillips, Veronica M. Bueno, Christopher F. Clements, Giovanni Castaldo, Tad A. Dallas, Carrie A. Cizauskas, Graeme S. Cumming, et al.

Biosynthesis of Sulfur-Containing tRNA Modifications: A Comparison of Bacterial, Archaeal, and Eukaryotic Pathways, Mirela Čavužić and Yuchen Liu

Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes, Prosanta Chakrabarty, Brant C. Faircloth, Fernando Alda, William B. Ludt, Caleb D. Mcmahan, Thomas J. Near, Alex Dornburg, and James S. Albert

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Binding of nitric oxide in CDGSH-type [2Fe-2S] clusters of the human mitochondrial protein miner2, Zishuo Cheng, Aaron P. Landry, Yiming Wang, and Huangen Ding

Syntheses and PDT activity of new mono- and di-conjugated derivatives of chlorin e, Hui Chen, Stewart W. Humble, R G. Waruna Jinadasa, Zehua Zhou, Alex L. Nguyen, M Graça Vicente, and Kevin M. Smith

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Caenorhabditis elegans RIG-I homolog mediates antiviral RNA interference downstream of Dicer-dependent biogenesis of viral small interfering RNAs, Stephanie R. Coffman, Jinfeng Lu, Xunyang Guo, Jing Zhong, Hongshan Jiang, Gina Broitman-Maduro, Wan Xiang Li, Rui Lu, Morris Maduro, and Shou Wei Ding

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Intramyocellular Lipid Droplet Size Rather Than Total Lipid Content is Related to Insulin Sensitivity After 8 Weeks of Overfeeding, Jeffrey D. Covington, Darcy L. Johannsen, Paul M. Coen, David H. Burk, Diana N. Obanda, Philip J. Ebenezer, Charmaine S. Tam, Bret H. Goodpaster, Eric Ravussin, and Sudip Bajpeyi

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Crystal structure of heart 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB2) and the inhibitory influence of citrate on substrate binding, Robert B. Crochet, Jeong Do Kim, Herie Lee, Young Sun Yim, Song Gun Kim, David Neau, and Yong Hwan Lee

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Costs of reproduction and carry-over effects in breeding albatrosses, Glenn T. Crossin, Richard A. Phillips, Christine R. Lattin, L. Michael Romero, Xavier Bordeleau, Christopher M. Harris, Oliver P. Love, and Tony D. Williams

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Species are not most abundant in the centre of their geographic range or climatic niche, Tad Dallas, Robin R. Decker, and Alan Hastings

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Estimating parasite host range, Tad Dallas, Shan Huang, Charles Nunn, Andrew W. Park, and John M. Drake

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Predictability of helminth parasite host range using information on geography, host traits and parasite community structure, Tad Dallas, Andrew W. Park, and John M. Drake

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Predicting cryptic links in host-parasite networks, Tad Dallas, Andrew W. Park, and John M. Drake

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Making plants break a sweat: The structure, function, and evolution of plant salt glands, Maheshi Dassanayake and John C. Larkin

Shoreline oiling effects and recovery of salt marsh macroinvertebrates from the Oil Spill, Donald R. Deis, John W. Fleeger, Stefan M. Bourgoin, Irving A. Mendelssohn, Qianxin Lin, and Aixin Hou

MarR family transcription factors: dynamic variations on a common scaffold, Dinesh K. Deochand and Anne Grove

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Plant Carbonic Anhydrases: Structures, Locations, Evolution, and Physiological Roles, Robert J. DiMario, Harmony Clayton, Ananya Mukherjee, Martha Ludwig, and James V. Moroney

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Biomarkers of Aryl-hydrocarbon Receptor Activity in Gulf Killifish (Fundulus grandis) From Northern Gulf of Mexico Marshes Following the Deepwater Horizon Oil Spill, Benjamin Dubansky, Charles D. Rice, Lester F. Barrois, and Fernando Galvez

Cryptic Female Choice Revisited: A Response to Firman et al, William G. Eberhard

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Cosmopolitan species as models for ecophysiological responses to global change: The common reed phragmites australis, Franziska Eller, Hana Skálová, Joshua S. Caplan, Ganesh P. Bhattarai, Melissa K. Burger, James T. Cronin, Wen Yong Guo, Xiao Guo, Eric L.G. Hazelton, Karin M. Kettenring, et al.

Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements, Jacob A. Esselstyn, Carl H. Oliveros, Mark T. Swanson, and Brant C. Faircloth