Submissions from 2019
Thylakoid localized bestrophin-like proteins are essential for the CO2 concentrating mechanism of Chlamydomonas reinhardtii, Ananya Mukherjee, Chun Sing Lau, Charlotte E. Walker, Ashwani K. Rai, Camille I. Prejean, Gary Yates, Thomas Emrich-Mills, Spencer G. Lemoine, David J. Vinyard, Luke C.M. Mackinder, et al.
How protein - Protein interactions contribute to pyrenoid formation in Chlamydomonas, Ananya Mukherjee and James V. Moroney
Binding site matching in rational drug design: Algorithms and applications, Misagh Naderi, Jeffrey Mitchell Lemoine, Rajiv Gandhi Govindaraj, Omar Zade Kana, Wei Pan Feinstein, and Michal Brylinski
Chloride to the rescue, Marcia E. Newcomer
Quantifying amphibian range fragmentation in the southeastern United States, Catherine E. Newman and Christopher C. Austin
Capillary electrophoretic assay of human acetyl-coenzyme A carboxylase 2, Thu H. Nguyen, Grover L. Waldrop, and S Douglass Gilman
Capillary electrophoretic assay of human acetyl-coenzyme A carboxylase 2, Thu H. Nguyen, Grover L. Waldrop, and S Douglass Gilman
Male dominance status regulates odor-evoked processing in the forebrain of a cichlid fish, Alexandre A. Nikonov and Karen P. Maruska
A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels, Anna Norberg, Nerea Abrego, F. Guillaume Blanchet, Frederick R. Adler, Barbara J. Anderson, Jani Anttila, Miguel B. Araújo, Tad Dallas, David Dunson, Jane Elith, et al.
Maternal pre-pregnancy weight status modifies the influence of PUFAs and inflammatory biomarkers in breastmilk on infant growth, Henry Nuss, Abby Altazan, Jovanny Zabaleta, Melinda Sothern, and Leanne Redman
Plant Growth and Agrobacterium-mediated Floral-dip Transformation of the Extremophyte Schrenkiella parvula., Dong-Ha Oh
Landscape of gene transposition-duplication within the Brassicaceae family, Dong Ha Oh and Maheshi Dassanayake
Synthesis and investigation of phthalocyanine-biotin conjugates, Elizabeth A. Okoth, Zehua Zhou, Benson Ongarora, Alyssa Stutes, J Michael Mathis, and M Graça Vicente
Earth history and the passerine superradiation, Carl H. Oliveros, Daniel J. Field, Daniel T. Ksepka, F. Keith Barker, Alexandre Aleixo, Michael J. Andersen, Per Alström, Brett W. Benz, Edward L. Braun, Michael J. Braun, et al.
Obesity "complements" preeclampsia, Kelsey N. Olson, Leanne M. Redman, and Jenny L. Sones
RONALD P. KIENE: Major League Pitching Prospect, Avid Sports Fisherman, and Biogeochemist Who Probed the Mysteries of the Oceanic Organosulfur Cycle, Ronald S. Oremland, Gary King, Pieter Visscher, and Douglas G. Capone
Evolutionary Dynamics Of Hybridization And Introgression Following The Recent Colonization Of Glossy Ibis (Aves: Plegadis Falcinellus) Into The New World, J A. Oswald, M G. Harvey, R C. Remsen, D U. Foxworth, J A. Oswald, S W. Cardiff, and R T. Brumfield
An ensemble of lipoxygenase structures reveals novel conformations of the Fe coordination sphere, Svetlana Pakhomova, William E. Boeglin, David B. Neau, Sue G. Bartlett, Alan R. Brash, and Marcia E. Newcomer
A DedA Family Membrane Protein Is Required for Burkholderia thailandensis Colistin Resistance, Pradip R. Panta, Sujeet Kumar, Caroline F. Stafford, Caitlin E. Billiot, Martin V. Douglass, Carmen M. Herrera, M. Stephen Trent, and William T. Doerrler
Erratum: Vector species richness increases haemorrhagic disease prevalence through functional diversity modulating the duration of seasonal transmission (Parasitology (2015) 143 (874-879) DOI: 10.1017/S0031182015000578), Andrew W. Park, Christopher A. Cleveland, Tad A. Dallas, and Joseph L. Corn
Trpm4 ion channels in pre-bötzinger complex interneurons are essential for breathing motor pattern but not rhythm, Maria Cristina D. Picardo, Yae K. Sugimura, Kaitlyn E. Dorst, Prajkta S. Kallurkar, Victoria T. Akins, Xingru Ma, Ryoichi Teruyama, Romain Guinamard, Kaiwen Kam, Margaret S. Saha, et al.
Phylogenomic species delimitation in microendemic frogs of the Brazilian Atlantic Forest, Marcio R. Pie, Marcos R. Bornschein, Luiz F. Ribeiro, Brant C. Faircloth, and John E. McCormack
Wet and dry tropical forests show opposite successional pathways in wood density but converge over time, Lourens Poorter, Danaë M. Rozendaal, Frans Bongers, Jarcilene S. de Almeida-Cortez, Angélica María Almeyda Zambrano, Francisco S. Álvarez, José Luís Andrade, and Luis Felipe Villa
ML-morph: A Fast, Accurate and General Approach for Automated Detection and Landmarking of Biological Structures in Images, Arthur Porto and Kjetil L. Voje
Deepdrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network, Limeng Pu, Rajiv Gandhi Govindaraj, Jeffrey Mitchell Lemoine, Hsiao Chun Wu, and Michal Brylinski
EToxPred: A machine learning-based approach to estimate the toxicity of drug candidates 11 Medical and Health Sciences 1115 Pharmacology and Pharmaceutical Sciences 03 Chemical Sciences 0305 Organic Chemistry 03 Chemical Sciences 0304 Medicinal and Biomolecular Chemistry, Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao Chun Wu, Supratik Mukhopadhyay, and Michal Brylinski
Characterization of an Extensive Interface on Vitronectin for Binding to Plasminogen Activator Inhibitor-1: Adoption of Structure in an Intrinsically Disordered Region, Letitia O. Puster, Christopher B. Stanley, Vladimir N. Uversky, Joseph E. Curtis, Susan Krueger, Yuzhuo Chu, and Cynthia B. Peterson
Characterization of lipoprotein profiles in patients with hypertriglyceridemic Fredrickson-Levy and Lees dyslipidemia phenotypes: the Very Large Database of Lipids Studies 6 and 7, Renato Quispe, Aditya D. Hendrani, Behnoud Baradaran-Noveiry, Seth S. Martin, Emily Brown, Krishnaji R. Kulkarni, Maciej Banach, and Peter P. Toth
Applying community resilience theory to engagement with residents facing cumulative environmental exposure risks: lessons from Louisiana's industrial corridor, Margaret A. Reams and Jennifer K. Irving
Naringenin Promotes Thermogenic Gene Expression in Human White Adipose Tissue, Candida J. Rebello, Frank L. Greenway, Frank H. Lau, Yuan Lin, Jacqueline M. Stephens, William D. Johnson, and Ann A. Coulter
Dyslipidemia and the role of adipose tissue in early pregnancy in the BPH/5 mouse model for preeclampsia, Dorien Reijnders, Kelsey N. Olson, Chin-Chi Liu, Kalie F. Beckers, Sujoy Ghosh, Leanne M. Redman, and Jenny L. Sones
Adipocyte-Derived Hormones, Allison J. Richard and Jacqueline M. Stephens
Identification and Visualization of Functionally Important Domains and Residues in Herpes Simplex Virus Glycoprotein K(gK) Using a Combination of Phylogenetics and Protein Modeling, Paul J.F. Rider, Lyndon M. Coghill, Misagh Naderi, Jeremy M. Brown, Michal Brylinski, and Konstantin G. Kousoulas
Anti-viral immunity in the tumor microenvironment: implications for the rational design of herpes simplex virus type 1 oncolytic virotherapy, Paul J. Rider, Ifeanyi K. Uche, Larissa Sweeny, and Konstantin G. Kousoulas
Spirorchis spp. (Digenea: Schistosomatoidea) infecting map turtles (Cryptodira: Emydidae: Graptemys spp.) in southeastern North America: A new species, molecular phylogenies, and key to species, Jackson R. Roberts, Micah B. Warren, Kenneth M. Halanych, and Stephen A. Bullard
Patchy fires promote regeneration of longleaf pine (Pinus palustris Mill.) in pine savannas, Kevin M. Robertson, William J. Platt, and Charles E. Faires
Why the Static Allometry of Sexually-Selected Traits Is So Variable: The Importance of Function, Rafael Lucas Rodríguez and William G. Eberhard
The comparative genomics and complex population history of Papio baboons, Jeffrey Rogers, Muthuswamy Raveendran, R. Alan Harris, Thomas Mailund, Kalle Leppälä, Georgios Athanasiadis, Mikkel Heide Schierup, Jade Cheng, Kasper Munch, Jerilyn A. Walker, et al.
Biodiversity recovery of Neotropical secondary forests, Danaë M. Rozendaal, Frans Bongers, T Mitchell Aide, Esteban Alvarez-Dávila, Nataly Ascarrunz, Patricia Balvanera, Justin M. Becknell, and Tony V. Bentos
An EmrB multidrug efflux pump in Burkholderia thailandensis with unexpected roles in antibiotic resistance, Afsana Sabrin, Brennan W. Gioe, Ashish Gupta, and Anne Grove
A highly contiguous reference genome for northern bobwhite (Colinus virginianus), Jessie F. Salter, Oscar Johnson, Norman J. Stafford, William F. Herrin, Darren Schilling, Cody Cedotal, Robb T. Brumfield, and Brant C. Faircloth
A taxonomic synopsis of Virola (Myristicaceae) in Mesoamerica, including six new species, Daniel Santamaría-Aguilar, Reinaldo Aguilar, and Laura P. Lagomarsino
Reproductive Capacity Evolves in Response to Ecology through Common Changes in Cell Number in Hawaiian Drosophila, Didem P. Sarikaya, Samuel H. Church, Laura P. Lagomarsino, Karl N. Magnacca, Steven L. Montgomery, Donald K. Price, Kenneth Y. Kaneshiro, and Cassandra G. Extavour
A 5‑lipoxygenase-specific sequence motif impedes enzyme activity and confers dependence on a partner protein, Erin E. Schexnaydre, Jana Gerstmeier, Ulrike Garscha, Paul M. Jordan, Oliver Werz, and Marcia E. Newcomer
Diversification History In The Dendrocincla Fuliginosa Complex (Aves: Dendrocolaptidae): Insights From Broad Geographic Sampling, E D. Schultz, J Perez-Eman, A Aleixo, C Y. Miyaki, E D. Schultz, J Cracraft, and C C. Ribas
Diversification history in the Dendrocincla fuliginosa complex (Aves: Dendrocolaptidae): Insights from broad geographic sampling, Eduardo D. Schultz, Jorge Pérez-Emán, Alexandre Aleixo, Cristina Y. Miyaki, Robb T. Brumfield, Joel Cracraft, and Camila C. Ribas
Evidence that Moderate Eviction of Spt5 and Promotion of Error-Free Transcriptional Bypass by Rad26 Facilitates Transcription Coupled Nucleotide Excision Repair, Kathiresan Selvam, Baojin Ding, Rahul Sharma, and Shisheng Li
Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair, Kathiresan Selvam, Sheikh Arafatur Rahman, and Shisheng Li
Frequent fire reorganizes fungal communities and slows decomposition across a heterogeneous pine savanna landscape, Tatiana A. Semenova-Nelsen, William J. Platt, Taylor R. Patterson, Jean Huffman, and Benjamin A. Sikes
Sexually dimorphic oxytocin receptorexpressing neurons in the preoptic area of the mouse brain, Kaustubh Sharma, Ryan LeBlanc, Masudul Haque, Katsuhiko Nishimori, Madigan M. Reid, and Ryoichi Teruyama
The link between purine metabolism and production of antibiotics in streptomyces, Smitha Sivapragasam and Anne Grove
Environmentally persistent free radicals: Linking air pollution and poor respiratory health?, Peter D. Sly, Stephania A. Cormier, Slawomir Lomnicki, Jeffrey N. Harding, Keith Grimwood, and Griffith University
Children’s environmental health in south and Southeast Asia: Networking for better child health outcomes, Peter D. Sly, Brittany Trottier, David Carpenter, Ubon Cha’on, Stephania Cormier, Betsy Galluzzo, Samayita Ghosh, Fiona Goldizen, Michelle Heacock, Paul Jagals, et al.
Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field, Paul F. South, Amanda P. Cavanagh, Helen W. Liu, and Donald R. Ort
Erratum: Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field (Science DOI: 10.1126/science.aat9077), P. F. South, A. P. Cavanagh, H. W. Liu, and D. R. Ort
Description of a New Species of Ponyfish (Teleostei: Leiognathidae: Equulitini: Photolateralis) from the Gulf of Oman, John S. Sparks and Prosanta Chakrabarty
MIR29B mediates epigenetic mechanisms of HBG gene activation, Athena Starlard-Davenport, Alana Smith, Luan Vu, Biaoru Li, and Betty S. Pace
The expression of adipose tissue-derived cardiotrophin-1 in humans with obesity, Jacqueline Stephens, Eric Ravussin, and Ursula White
Amplification dynamics of platy-1 retrotransposons in the cebidae platyrrhine lineage, Jessica M. Storer, Jackson R. Mierl, Sarah A. Brantley, Breanna Threeton, Yahor Sukharutski, Lydia C. Rewerts, Corey P. St Romain, Madeline M. Foreman, Jasmine N. Baker, Jerilyn A. Walker, et al.
Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers, Mekala Sundaram, Michael J. Donoghue, Aljos Farjon, Denis Filer, Sarah Mathews, Walter Jetz, and Andrew B. Leslie
A phylogenomic rodent tree reveals the repeated evolution of masseter architectures, Mark T. Swanson, Carl H. Oliveros, and Jacob A. Esselstyn
What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?, Ryan A. Tamashiro, Noor D. White, Michael J. Braun, Brant C. Faircloth, Edward L. Braun, and Rebecca T. Kimball
Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs, Lana F. Thaljeh, J. Ainsley Rothschild, Misagh Naderi, Lyndon M. Coghill, Jeremy M. Brown, and Michal Brylinski
Do global regulators hold the key to production of bacterial secondary metabolites?, Sudarshan Singh Thapa and Anne Grove
From pampa to puna: Biogeography and diversification of a group of Neotropical obligate grassland birds (Anthus: Motacillidae), Paul van Els
Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays, Nicholas T. Vinciguerra, Whitney L. E. Tsai, Brant C. Faircloth, and John E. McCormack
Photosystem II oxygen-evolving complex photoassembly displays an inverse H/D solvent isotope effect under chloride-limiting conditions, David J. Vinyard, Syed Lal Badshah, M. Rita Riggio, Divya Kaur, Annaliesa R. Fanguy, and M. R. Gunner
Occurrence and cycling of trace elements in ultramafic soils and their impacts on human health: A critical review, Meththika Vithanage, Prasanna Kumarathilaka, Christopher Oze, Suniti Karunatilake, Mihiri Seneviratne, Zeng-Yei Hseu, Viraj Gunarathne, Maheshi Dassanayake, Yong Sik Ok, and Jörg Rinklebe
Elevated levels of type 2 respiratory innate lymphoid cells in human infants with severe respiratory syncytial virus bronchiolitis, Luan D. Vu, David Siefker, Tamekia L. Jones, Dahui You, Ryleigh Taylor, John DeVincenzo, and Stephania A. Cormier
Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry, Jerilyn A. Walker, Vallmer E. Jordan, Jessica M. Storer, Cody J. Steely, Paulina Gonzalez-Quiroga, Thomas O. Beckstrom, Lydia C. Rewerts, Corey P. St. Romain, Catherine E. Rockwell, Jeffrey Rogers, et al.
RNA sampling from tissue sections using infrared laser ablation, Kelin Wang, Fabrizio Donnarumma, Scott W. Herke, Chao Dong, Patrick F. Herke, and Kermit K. Murray
Light-induced release of nitric oxide from the nitric oxide-bound CDGSH-type [2Fe–2S] clusters in mitochondrial protein Miner2, Yiming Wang, Jeonghoon Lee, and Huangen Ding
Physiology of crapemyrtle bark scale, Acanthococcus lagerstroemiae (Kuwana), associated with seasonally altered cold tolerance, Zinan Wang, Yan Chen, Rodrigo Diaz, and Roger A. Laine
A 1-dimensional sympagic-pelagic-benthic transport model (SPBM): Coupled simulation of ice, water column, and sediment biogeochemistry, suitable for arctic applications, Shamil Yakubov, Philip Wallhead, Elizaveta Protsenko, Evgeniy Yakushev, Svetlana Pakhomova, and Holger Brix
Longitudinal effects of maternal love withdrawal and guilt induction on Chinese American preschoolers' bullying aggressive behavior, Jing Yu, Charissa S.L. Cheah, Craig H. Hart, Chongming Yang, and Joseph A. Olsen
Submissions from 2018
The CSBG - LSU Gateway: Web based hosted gateway for computational system biology application tools from Louisiana state university, Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, and Marlon Pierce
Loss of DBC1 (CCAR2) affects TNFα-induced lipolysis and Glut4 gene expression in murine adipocytes, Ashley A. Able, Allison J. Richard, and Jacqueline M. Stephens
Modular perverse sheaves on flag varieties III: Positivity conditions, Pramod N. Achar and Simon Riche
Reductive groups, the loop Grassmannian, and the Springer resolution, Pramod N. Achar and Simon Riche
Mitogenomic divergence between three pairs of putative geminate fishes from Panama, Fernando Alda, Alexandria J. Adams, Prosanta Chakrabarty, and W. Owen McMillan
Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary, Michael E. Alfaro, Brant C. Faircloth, Richard C. Harrington, Laurie Sorenson, Matt Friedman, Christine E. Thacker, Carl H. Oliveros, David Černý, and Thomas J. Near
Intraspecific variation in indirect plant–soil feedbacks influences a wetland plant invasion, Warwick J. Allen, Laura A. Meyerson, Andrew J. Flick, and James T. Cronin
L-citrulline supplementation: Impact on cardiometabolic health, Timothy D. Allerton, David N. Proctor, Jacqueline M. Stephens, Tammy R. Dugas, Guillaume Spielmann, and Brian A. Irving
Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses, Jasmine N. Baker, Jerilyn A. Walker, Michael W. Denham, Charles D. Loupe, and Mark A. Batzer
Intergenic and intronic DNA hypomethylated regions as putative regulators of imprinted domains, Arundhati Bakshi, Corey L. Bretz, Terri L. Cain, and Joomyeong Kim
Maternal encouragement of modest behavior, temperamental shyness, and anxious withdrawal linkages to Chinese American children's social adjustment: A moderated mediation analysis, Merve Balkaya, Charissa S.L. Cheah, Jing Yu, Craig H. Hart, and Shuyan Sun
Making epidermal bladder cells bigger: Developmental-and salinity-induced endopolyploidy in a model halophyte, Bronwyn J. Barkla, Timothy Rhodes, Kieu Nga T. Tran, Chathura Wijesinghege, John C. Larkin, and Maheshi Dassanayake
Impact of Model Violations on the Inference of Species Boundaries under the Multispecies Coalescent, Anthony J. Barley, Jeremy M. Brown, and Robert C. Thomson
Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses, Mark Batzer, Jasmine N. Baker, Jerilyn A. Walker, Michael W. Denham, and Charles D. Loupe
A spatiotemporal dna endoploidy map of the arabidopsis root reveals roles for the endocycle in root development and stress adaptation, Rahul Bhosale, Veronique Boudolf, Fabiola Cuevas, Ran Lu, Thomas Eekhout, Zhubing Hu, Gert Van Isterdael, Georgina M. Lambert, Fan Xu, Moritz K. Nowack, et al.
Heritability and genetic associations of triglyceride and HDL-C levels using pedigree-based and empirical kinships, Nicholas B. Blackburn, Arthur Porto, Juan M. Peralta, and John Blangero
Staining the Germline in Live : Overcoming Challenges by Applying a Fluorescent-dye Feeding Strategy, K Adam Bohnert
Groundsel bush (Baccharis halimifolia) extract promotes adipocyte differentiation in vitro and increases adiponectin expression in mature adipocytes, Anik Boudreau, Scott Fuller, Davidm Ribnicky, Allison J. Richard, and Jacqueline M. Stephens
An ethanolic extract of artemisia scoparia inhibits lipolysis in vivo and has antilipolytic effects on murine adipocytes in vitro, Anik Boudreau, Allison J. Richard, Jasmine A. Burrell, William T. King, Ruth Dunn, Jean Marc Schwarz, David M. Ribnicky, Jennifer Rood, J. Michael Salbaum, and Jacqueline M. Stephens
Plasma Amino Acids During 8 Weeks of Overfeeding: Relation to Diet Body Composition and Fat Cell Size in the PROOF Study, George A. Bray, Leanne M. Redman, Lilian de Jonge, Jennifer Rood, Elizabeth F. Sutton, and Steven R. Smith
Plasma fatty acyl-carnitines during 8 weeks of overfeeding: relation to diet energy expenditure and body composition: the PROOF study, George A. Bray, Leanne M. Redman, Lilian de Jonge, Jennifer Rood, Elizabeth F. Sutton, and Steven R. Smith
Allele and dosage specificity of the Peg3 imprinted domain, Corey L. Bretz, Wesley D. Frey, Ryoichi Teruyama, and Joomyeong Kim
Trans-allelic mutational effects at the Peg3 imprinted locus, Corey L. Bretz and Joomyeong Kim
The behavior of metropolis-coupled Markov chains when sampling rugged phylogenetic distributions, Jeremy M. Brown and Robert C. Thomson
Evaluating Model Performance in Evolutionary Biology, Jeremy M. Brown and Robert C. Thomson