Submissions from 2020
A Role for Oncostatin M in the Impairment of Glucose Homeostasis in Obesity, Irene Piquer-Garcia, Laura Campderros, Siri D. Taxerås, Aleix Gavaldà-Navarro, Rosario Pardo, María Vila, Silvia Pellitero, Eva Martínez, Jordi Tarascó, Pau Moreno, et al.
ALPACA: a fast and accurate approach for automated landmarking of three-dimensional biological structures, Arthur Porto
SlicerMorph: An open and extensible platform to retrieve, visualize and analyze 3D morphology, Arthur Porto
ML‐morph: A fast, accurate and general approach for automated detection and landmarking of biological structures in images, Arthur Porto and Kjetil L. Voje
Water lily (Nymphaea thermarum) genome reveals variable genomic signatures of ancient vascular cambium losses, Rebecca A. Povilus, Jeffrey M. DaCosta, Christopher Grassa, Prasad R.V. Satyaki, Morgan Moeglein, Johan Jaenisch, Zhenxiang Xi, Sarah Mathews, Mary Gehring, Charles C. Davis, et al.
Speciation-by-depth on coral reefs: Sympatric divergence with gene flow or cryptic transient isolation?, Carlos Prada and Michael E. Hellberg
Speciation-by-depth on coral reefs: Sympatric divergence with gene flow or cryptic transient isolation?, Carlos Prada and Michael E. Hellberg
Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships, Arun N. Prasanna, Daniel Gerber, Teeratas Kijpornyongpan, M Catherine Aime, Vinson P. Doyle, and Laszlo G. Nagy
Geographic patterns and environmental correlates of phylogenetic relatedness and diversity for freshwater fish assemblages in North America, Hong Qian, Yong Cao, Daijiang Li, Cindy Chu, Brody Sandel, and Xianli Wang
Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time, Andrea M. Quattrini, Estefanía Rodríguez, Brant C. Faircloth, Peter F. Cowman, Mercer R. Brugler, Gabriela A. Farfan, Michael E. Hellberg, and Marcelo V. Kitahara
Reducing host DNA contamination in 16S rRNA gene surveys of anthozoan microbiomes using PNA clamps, Alicia M. Reigel, Sarah M. Owens, and Michael E. Hellberg
A New Species Of New Guinea Worm-Eating Snake (Elapidae: Toxicocalamus Boulenger, 1896), With Comments On Postfrontal Bone Variation Based On Micro-Computed Tomography, J R. Roberts and C C. Austin
Extensive paraphyly in the typical owl family (Strigidae), Jessie F. Salter, Carl H. Oliveros, Peter A. Hosner, Joseph D. Manthey, Mark B. Robbins, Robert G. Moyle, Robb T. Brumfield, and Brant C. Faircloth
Adipocyte Oncostatin Receptor Regulates Adipose Tissue Homeostasis and Inflammation, David Sanchez-Infantes and Jacqueline M. Stephens
Histone H4 LRS mutations can attenuate UV mutagenesis without affecting PCNA ubiquitination or sumoylation, Kathiresan Selvam, Sheikh Arafatur Rahman, Derek Forrester, Adam Bao, Michael Lieu, and Shisheng Li
Investigating The Utility Of Traditional And Genomic Multi-Locus Datasets To Resolve Relationships In Lipaugus And Tijuca (Cotingidae), A E. Settlecowski, A M. Cuervo, J G. Tello, M G. Harvey, A E. Settlecowski, and E P. Derryberry
A note on species richness and the variance of epidemic severity, Peter Shaffery, Bret D. Elderd, and Vanja Dukic
BionoiNet: Ligand-binding site classification with off-the-shelf deep neural network, Wentao Shi, Jeffrey M. Lemoine, Abd El Monsif A. Shawky, Manali Singha, Limeng Pu, Shuangyan Yang, J. Ramanujam, and Michal Brylinski
Respiratory syncytial virus disease severity is associated with distinct CD8+ T-cell profiles, David T. Siefker, Luan Vu, Dahui You, Andrew McBride, Ryleigh Taylor, Tamekia L. Jones, John DeVincenzo, and Stephania A. Cormier
Global gene flow releases invasive plants from environmental constraints on genetic diversity, Annabel L. Smith, Trevor R. Hodkinson, Jesus Villellas, Jane A. Catford, Anna Mária Csergő, Simone P. Blomberg, Elizabeth E. Crone, Johan Ehrlén, Maria B. Garcia, Anna Liisa Laine, et al.
Development of Anncaliia algerae (Microsporidia) in Drosophila melanogaster, Yuliya Y. Sokolova, Earl Weidner, and Patrick J. DiMario
Improving natural product research translation: From source to clinical trial, Barbara C. Sorkin, Adam J. Kuszak, Gregory Bloss, Naomi K. Fukagawa, Freddie Ann Hoffman, Mahtab Jafari, Bruce Barrett, Paula N. Brown, Frederic D. Bushman, Steven J. Casper, et al.
Sensitivity Of The Polydetect Computational Pipeline For Phylogenetic Analyses, J M. Storer, J A. Walker, V E. Jordan, M A. Batzer, and J M. Storer
A Novel Mutation of the Gene Adversely Affects Plant Architecture in Rice ( L.), Prasanta K. Subudhi, Richard S. Garcia, Sapphire Coronejo, and Teresa B. De Leon
Comparative Transcriptomics of Rice Genotypes with Contrasting Responses to Nitrogen Stress Reveals Genes Influencing Nitrogen Uptake through the Regulation of Root Architecture, Prasanta K. Subudhi, Richard S. Garcia, Sapphire Coronejo, and Ronald Tapia
Divergence in a stress regulatory network underlies differential growth control, Ying Sun, Dong-Ha Oh, Lina Duan, Prashanth Ramachandran, Andrea Ramirez, Anna Bartlett, Maheshi Dassanayake, and José R. Dinneny
The Other Side Of The Sahulian Coin: Biogeography And Evolution Of Melanesian Forest Dragons (Agamidae), O J. Tallowin, S Meiri, S C. Donnellan, S J. Richards, O J. Tallowin, and P M. Oliver
Advances in the neurophysiology of magnocellular neuroendocrine cells, Jeffrey G. Tasker, Masha Prager-Khoutorsky, Ryoichi Teruyama, José R. Lemos, and William E. Amstrong
Exploring the FMN binding site in the mitochondrial outer membrane protein mitoNEET, Homyra Tasnim, Aaron P. Landry, Chelsey R. Fontenot, and Huangen Ding
Sixty-first Supplement to the American Ornithological Society's Check-list of North American Birds, R. Terry Chesser, Shawn M. Billerman, Kevin J. Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Nicholas A. Mason, Pamela C. Rasmussen, J. V. Remsen, et al.
Impaired purine homeostasis plays a primary role in trimethoprim-mediated induction of virulence genes in Burkholderia thailandensis, Sudarshan S. Thapa and Anne Grove
The effect of summer drought on the predictability of local extinctions in a butterfly metapopulation, Erik van Bergen, Tad Dallas, Michelle F. DiLeo, Aapo Kahilainen, Anniina L.K. Mattila, Miska Luoto, and Marjo Saastamoinen
Optimal markers for the identification of Colletotrichum species, Willie Anderson Vieira, Priscila Alves Bezerra, Anthony Carlos Silva, Josiene Silva Veloso, Marcos Paz Câmara, and Vinson Patrick Doyle
Revisiting a Landmark Study System: No Evidence for a Punctuated Mode of Evolution in Metrarabdotos., Kjetil Lysne Voje, Emanuela Di Martino, and Arthur Porto
Cross species multi-omics reveals cell wall sequestration and elevated global transcription as mechanisms of boron tolerance in plants, Guannan Wang, Sandra Feuer DiTusa, Dong-Ha Oh, Achim D. Herrmann, David G. Mendoza-Cozatl, Malcolm A. O’Neill, Aaron P. Smith, and Maheshi Dassanayake
GOMCL: a t GOMCL: a toolkit t oolkit to cluster o cluster, evaluate, and extr aluate, and extract non-r act non-redundant edundant associations of Gene Ontology-based functions, Guannan Wang, Dong-Ha Oh, and Maheshi Dassanayake
The CDK Inhibitor SIAMESE Targets Both CDKA;1 and CDKB1 Complexes to Establish Endoreplication in Trichomes1[OPEN], Kai Wang, Ruth W. Ndathe, Narender Kumar, Elizabeth A. Zeringue, Naohiro Kato, and John C. Larkin
Using museum pelt collections to generate pollen prints from high-risk regions: A new palynological forensic strategy for geolocation, Sophie Warny, Shannon Ferguson, Mark S. Hafner, and Gilles Escarguel
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility, Wesley C. Warren, R Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason Fernandes, Philip C. Dishuck, Jessica M. Storer, Muthuswamy Raveendran, LaDeana W. Hillier, et al.
Microsporidia Can Acquire Lamin-like Intermediate Filaments and Cell Adhesion Catenin-cadherin Complexes from the Host (?), Earl Weidner, Yuliya Y. Sokolova, and Robin M. Overstreet
Remediation of crude oil-contaminated coastal marsh soil: Integrated effect of biochar, rhamnolipid biosurfactant and nitrogen application, Zhuo Wei, Jim J. Wang, Lewis A. Gaston, Jifeng Li, Lisa M. Fultz, Ronald D. DeLaune, and Syam K. Dodla
Targeting EGFR Overexpression at the Surface of Colorectal Cancer Cells by Exploiting Amidated BODIPY-Peptide Conjugates, Tyrslai M. Williams, Zehua Zhou, Sitanshu S. Singh, Martha Sibrian-Vazquez, Seetharama D. Jois, and Maria da Henriques Vicente
Mice without a microbiome are partially protected from lung injury by hyperoxia, Kent A. Willis, Joseph F. Pierre, Stephania A. Cormier, and Ajay J. Talati
Perinatal maternal antibiotic exposure augments lung injury in offspring in experimental bronchopulmonary dysplasia, Kent A. Willis, David T. Siefker, Michael M. Aziz, Catrina T. White, Naiha Mussarat, Charles K. Gomes, Amandeep Bajwa, Joseph F. Pierre, Stephania A. Cormier, and Ajay J. Talati
Native and Introduced Trypanosome Parasites in Endemic and Introduced Murine Rodents of Sulawesi, Monique L. Winterhoff, Anang S. Achmadi, Emily J. Roycroft, Heru Handika, Rizaldi Trias Putra, Karen M. Rowe, Susan L. Perkins, and Kevin C. Rowe
Correction to: Microbial communities associated with distance- and density-dependent seedling mortality in a tropical rainforest (Plant Ecology, (2020), 221, 1, (41-54), 10.1007/s11258-019-00989-y), J. L. Wood, P. T. Green, J. J. Vido, C. Celestina, K. E. Harms, and A. E. Franks
Microbial communities associated with distance- and density-dependent seedling mortality in a tropical rainforest, J. L. Wood, P. T. Green, J. J. Vido, C. Celestina, K. E. Harms, and A. E. Franks
Understanding the biogeochemical impacts of fish farms using a benthic-pelagic model, Evgeniy V. Yakushev, Philip Wallhead, Paul E. Renaud, Alisa Ilinskaya, Elizaveta Protsenko, Shamil Yakubov, Svetlana Pakhomova, Andrew K. Sweetman, Kathy Dunlop, Anfisa Berezina, et al.
The Nbp35/ApbC homolog acts as a nonessential [4Fe-4S] transfer protein in methanogenic archaea, Cuiping Zhao, Zhe Lyu, Feng Long, Taiwo Akinyemi, Kasidet Manakongtreecheep, Dieter Söll, William B. Whitman, David J. Vinyard, and Yuchen Liu
Submissions from 2019
LSU computational system biology gateway for education, Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, and Marlon Pierce
Virulence-driven trade-offs in disease transmission: A meta-analysis*, Miguel A. Acevedo, Forrest P. Dillemuth, Andrew J. Flick, Matthew J. Faldyn, and Bret D. Elderd
Calculations with graded perverse-coherent sheaves, Pramod N. Achar and William D. Hardesty
ON THE HUMPHREYS CONJECTURE ON SUPPORT VARIETIES OF TILTING MODULES, Pramod N. Achar, William Hardesty, and Simon Riche
Maternal childhood and lifetime traumatic life events and infant bronchiolitis, Margaret A. Adgent, Omar Elsayed-Ali, Tebeb Gebretsadik, Frances A. Tylavsky, Mehmet Kocak, Stephania A. Cormier, Rosalind J. Wright, and Kecia N. Carroll
Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting, Fernando Alda, Victor A. Tagliacollo, Maxwell J. Bernt, Brandon T. Waltz, William B. Ludt, Brant C. Faircloth, Michael E. Alfaro, and James S. Albert
Mood and quality of life changes in pregnancy and postpartum and the effect of a behavioral intervention targeting excess gestational weight gain in women with overweight and obesity: a parallel-arm randomized controlled pilot trial, Abby D. Altazan, Leanne M. Redman, Jeffrey H. Burton, Robbie A. Beyl, Loren E. Cain, Elizabeth F. Sutton, and Corby K. Martin
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements, Tobias Andermann, Alexandre M. Fernandes, Urban Olsson, Mats Töpel, Bernard Pfeil, Bengt Oxelman, Alexandre Aleixo, and Brant C. Faircloth
Optimization and Mechanistic Characterization of Pyridopyrimidine Inhibitors of Bacterial Biotin Carboxylase, Logan D. Andrews, Timothy R. Kane, Paola Dozzo, Cat M. Haglund, Darin J. Hilderbrandt, Martin S. Linsell, Timothy Machajewski, and Glen McEnroe
Ecogeographical rules and the macroecology of food webs, Benjamin Baiser, Dominique Gravel, Alyssa R. Cirtwill, Jennifer A. Dunne, Ashkaan K. Fahimipour, Luis J. Gilarranz, Joshua A. Grochow, Daijiang Li, Neo D. Martinez, Alicia McGrew, et al.
High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS), Arundhati Bakshi, Muhammad B. Ekram, and Joomyeong Kim
The CURE for Cultivating Fastidious Microbes, Arundhati Bakshi, Austen T. Webber, Lorelei E. Patrick, William Wischusen, and Cameron Thrash
Agricultural land-use history does not reduce woodland understory herb establishment, Carrie A. Barker, Nash E. Turley, John L. Orrock, Joseph A. Ledvina, and Lars A. Brudvig
Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage, Mark A. Batzer, Jessica M. Storer, Jackson R. Mierl, and Sarah A. Brantley
Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD), Natalia J. Bayona-Vásquez, Travis C. Glenn, Troy J. Kieran, Todd W. Pierson, Sandra L. Hoffberg, Peter A. Scott, Kerin E. Bentley, and John W. Finger
Duration of protection from live attenuated vs. sub unit HSV-2 vaccines in the guinea pig model of genital herpes: Reassessing efficacy using endpoints from clinical trials, David I. Bernstein, Rhonda D. Cardin, Derek A. Pullum, Fernando J. Bravo, Konstantin G. Kousoulas, and David A. Dixon
The HSV-1 live attenuated VC2 vaccine provides protection against HSV-2 genital infection in the guinea pig model of genital herpes, David I. Bernstein, Derek A. Pullum, Rhonda D. Cardin, Fernando J. Bravo, David A. Dixon, and Konstantin G. Kousoulas
A role for Vibrio vulnificus PecS during hypoxia, Nabanita Bhattacharyya, Tiffany L. Lemon, and Anne Grove
Habitat preference modulates transoceanic dispersal in a terrestrial vertebrate, Mozes P.K. Blom, Nicholas J. Matzke, Jason G. Bragg, Evy Arida, Christopher C. Austin, Adam R. Backlin, Miguel A. Carretero, Robert N. Fisher, Frank Glaw, Stacie A. Hathaway, et al.
Distinct fractions of an Artemisia scoparia extract contain compounds with novel adipogenic bioactivity, Anik Boudreau, Alexander Poulev, David M. Ribnicky, Ilya Raskin, Thirumurugan Rathinasabapathy, Allison J. Richard, and Jacqueline M. Stephens
Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons, Tess E. Brewer, Emma L. Aronson, Keshav Arogyaswamy, Sharon A. Billings, Jon K. Botthoff, Ashley N. Campbell, Nicholas C. Dove, Dawson Fairbanks, Rachel E. Gallery, Stephen C. Hart, et al.
The Panacea of Human Aging: Calorie Restriction Versus Exercise, Nicholas T. Broskey, Kara L. Marlatt, Jasper Most, Melissa L. Erickson, Brian A. Irving, and Leanne M. Redman
The influence of salinity on the toxicity of Corexit at multiple life stages of Gulf killifish, Charles Brown, Kendra Williamson, and Fernando Galvez
A variant of the Escherichia coli anaerobic transcription factor FNR exhibiting diminished promoter activation function enhances ionizing radiation resistance, Steven T. Bruckbauer, Joseph D. Trimarco, Camille Henry, Elizabeth A. Wood, John R. Battista, and Michael M. Cox
The aqueous environment as an active participant in the protein folding process, Michal Brylinski
Neotropical Turtle Blood Flukes: Two New Genera and Species from the Amazon River Basin with a Key to Genera and Comments on a Marine-Derived Parasite Lineage in South America, Stephen A. Bullard, Jackson R. Roberts, Micah B. Warren, Haley R. Dutton, Nathan V. Whelan, Carlos F. Ruiz, Thomas R. Platt, and Vasyl V. Tkach
One week of continuous corticosterone exposure impairs hepatic metabolic flexibility, promotes islet β-cell proliferation, and reduces physical activity in male C57BL/6 J mice, Susan J. Burke, Heidi M. Batdorf, Tai Yu Huang, Joseph W. Jackson, Katarina A. Jones, Thomas M. Martin, Kristen E. Rohli, Michael D. Karlstad, Tim E. Sparer, David H. Burk, et al.
Expression of tachykinin3 and related reproductive markers in the brain of the African cichlid fish Astatotilapia burtoni, Julie M. Butler and Karen P. Maruska
Reproductive state-dependent plasticity in the visual system of an African cichlid fish, Julie M. Butler, Sarah M. Whitlow, Loranzie S. Rogers, Rosalyn L. Putland, Allen F. Mensinger, and Karen P. Maruska
Diversity, Prevalence, and Virulence of Species Associated with Lima Bean in Brazil, Gerusa R. Cavalcante, Beatriz M. Barguil, Willie A. Vieira, Waléria G. Lima, Sami J. Michereff, Vinson P. Doyle, and Marcos P. Câmara
Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle, Javier A. Ceja-Navarro, Ulas Karaoz, Markus Bill, Zhao Hao, Richard A. White, Abelardo Arellano, Leila Ramanculova, and Timothy R. Filley
Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes, Prosanta Chakrabarty
Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival, Paul R.F. Cordero, Katherine Bayly, Pok Man Leung, Cheng Huang, Zahra F. Islam, Ralf B. Schittenhelm, Gary M. King, and Chris Greening
Effects of Patch–Matrix Composition and Individual Movement Response on Population Persistence at the Patch Level, James T. Cronin, Jerome Goddard, and Ratnasingham Shivaji
Local adaptation of a dominant coastal tree to freshwater availability and solar radiation suggested by genomic and ecophysiological approaches, Mariana Vargas Cruz, Gustavo Maruyama Mori, Caroline Signori-Müller, Carla Cristina da Silva, Dong Ha Oh, Maheshi Dassanayake, Maria Imaculada Zucchi, Rafael Silva Oliveira, and Anete Pereira de Souza
Non-Steady State Analysis of Enzyme Kinetics in Real Time Elucidates Substrate Association and Dissociation Rates: Demonstration with Analysis of Firefly Luciferase Mutants, Renee Dale, Yuki Ohmuro-Matsuyama, Hiroshi Ueda, and Naohiro Kato
Testing predictability of disease outbreaks with a simple model of pathogen biogeography, Tad A. Dallas, Colin J. Carlson, and Timothée Poisot
Detecting parasite associations within multi-species host and parasite communities, Tad A. Dallas, Anna Liisa Laine, and Otso Ovaskainen
Contrasting latitudinal gradients of body size in helminth parasites and their hosts, Tad Dallas, Alyssa Lois M. Gehman, A. Alonso Aguirre, Sarah A. Budischak, John M. Drake, Maxwell J. Farrell, Ria Ghai, Shan Huang, and Ignacio Morales-Castilla
When can competition and dispersal lead to checkerboard distributions?, Tad Dallas, Brett A. Melbourne, and Alan Hastings
Flooding-Associated Soft Rot of Sweetpotato Storage Roots Caused by Distinct Isolates, Washington L. da Silva, Kuei-Ting Yang, Gregg S. Pettis, Natasha R. Soares, Rebecca Giorno, and Christopher A. Clark
Legacy effects of Hurricane Katrina influenced marsh shoreline erosion following the Deepwater Horizon oil spill, Donald R. Deis, Irving A. Mendelssohn, John W. Fleeger, Stefan M. Bourgoin, and Qianxin Lin
Loss of genetic diversity, recovery and allele surfing in a colonizing parasite, Geomydoecus aurei, James W. Demastes, David J. Hafner, Mark S. Hafner, Jessica E. Light, and Theresa A. Spradling
Redox Sensing by PecS from the Plant Pathogen Pectobacterium atrosepticum and Its Effect on Gene Expression and the Conformation of PecS-Bound Promoter DNA, Dinesh K. Deochand, Anuja Pande, Jacob K. Meariman, and Anne Grove
The Nopp140 gene in Drosophila melanogaster displays length polymorphisms in its large repetitive second exon, Patrick J. DiMario and Sonu Shrestha Baral
Zinc Toxicity and Iron-Sulfur Cluster Biogenesis in Escherichia coli, Huangen Ding
Demonstrating sexual selection by cryptic female choice on male genitalia: What is enough?, William G. Eberhard and Gerlind U. Lehmann
Bayesian-based survival analysis: inferring time to death in host-pathogen interactions, Bret Elderd
Bottom-up trait-mediated indirect effects decrease pathogen transmission in a tritrophic system, Bret D. Elderd
Using insect baculoviruses to understand how population structure affects disease spread, Bret D. Elderd and Greg Dwyer
Effects Of Lifestyle Intervention On Plasma Trimethylamine N-Oxide In Obese Adults, M L. Erickson, S K. Malin, Z N. Wang, J M. Brown, M L. Erickson, and J P. Kirwan