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Submissions from 2019

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Naringenin Promotes Thermogenic Gene Expression in Human White Adipose Tissue, Candida J. Rebello, Frank L. Greenway, Frank H. Lau, Yuan Lin, Jacqueline M. Stephens, William D. Johnson, and Ann A. Coulter

Dyslipidemia and the role of adipose tissue in early pregnancy in the BPH/5 mouse model for preeclampsia, Dorien Reijnders, Kelsey N. Olson, Chin-Chi Liu, Kalie F. Beckers, Sujoy Ghosh, Leanne M. Redman, and Jenny L. Sones

Adipocyte-Derived Hormones, Allison J. Richard and Jacqueline M. Stephens

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Identification and Visualization of Functionally Important Domains and Residues in Herpes Simplex Virus Glycoprotein K(gK) Using a Combination of Phylogenetics and Protein Modeling, Paul J.F. Rider, Lyndon M. Coghill, Misagh Naderi, Jeremy M. Brown, Michal Brylinski, and Konstantin G. Kousoulas

Anti-viral immunity in the tumor microenvironment: implications for the rational design of herpes simplex virus type 1 oncolytic virotherapy, Paul J. Rider, Ifeanyi K. Uche, Larissa Sweeny, and Konstantin G. Kousoulas

Spirorchis spp. (Digenea: Schistosomatoidea) infecting map turtles (Cryptodira: Emydidae: Graptemys spp.) in southeastern North America: A new species, molecular phylogenies, and key to species, Jackson R. Roberts, Micah B. Warren, Kenneth M. Halanych, and Stephen A. Bullard

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Patchy fires promote regeneration of longleaf pine (Pinus palustris Mill.) in pine savannas, Kevin M. Robertson, William J. Platt, and Charles E. Faires

Why the Static Allometry of Sexually-Selected Traits Is So Variable: The Importance of Function, Rafael Lucas Rodríguez and William G. Eberhard

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The comparative genomics and complex population history of Papio baboons, Jeffrey Rogers, Muthuswamy Raveendran, R. Alan Harris, Thomas Mailund, Kalle Leppälä, Georgios Athanasiadis, Mikkel Heide Schierup, Jade Cheng, Kasper Munch, Jerilyn A. Walker, et al.

Biodiversity recovery of Neotropical secondary forests, Danaë M. Rozendaal, Frans Bongers, T Mitchell Aide, Esteban Alvarez-Dávila, Nataly Ascarrunz, Patricia Balvanera, Justin M. Becknell, and Tony V. Bentos

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An EmrB multidrug efflux pump in Burkholderia thailandensis with unexpected roles in antibiotic resistance, Afsana Sabrin, Brennan W. Gioe, Ashish Gupta, and Anne Grove

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A highly contiguous reference genome for northern bobwhite (Colinus virginianus), Jessie F. Salter, Oscar Johnson, Norman J. Stafford, William F. Herrin, Darren Schilling, Cody Cedotal, Robb T. Brumfield, and Brant C. Faircloth

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A taxonomic synopsis of Virola (Myristicaceae) in Mesoamerica, including six new species, Daniel Santamaría-Aguilar, Reinaldo Aguilar, and Laura P. Lagomarsino

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Reproductive Capacity Evolves in Response to Ecology through Common Changes in Cell Number in Hawaiian Drosophila, Didem P. Sarikaya, Samuel H. Church, Laura P. Lagomarsino, Karl N. Magnacca, Steven L. Montgomery, Donald K. Price, Kenneth Y. Kaneshiro, and Cassandra G. Extavour

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A 5‑lipoxygenase-specific sequence motif impedes enzyme activity and confers dependence on a partner protein, Erin E. Schexnaydre, Jana Gerstmeier, Ulrike Garscha, Paul M. Jordan, Oliver Werz, and Marcia E. Newcomer

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Diversification History In The Dendrocincla Fuliginosa Complex (Aves: Dendrocolaptidae): Insights From Broad Geographic Sampling, E D. Schultz, J Perez-Eman, A Aleixo, C Y. Miyaki, E D. Schultz, J Cracraft, and C C. Ribas

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Diversification history in the Dendrocincla fuliginosa complex (Aves: Dendrocolaptidae): Insights from broad geographic sampling, Eduardo D. Schultz, Jorge Pérez-Emán, Alexandre Aleixo, Cristina Y. Miyaki, Robb T. Brumfield, Joel Cracraft, and Camila C. Ribas

Evidence that Moderate Eviction of Spt5 and Promotion of Error-Free Transcriptional Bypass by Rad26 Facilitates Transcription Coupled Nucleotide Excision Repair, Kathiresan Selvam, Baojin Ding, Rahul Sharma, and Shisheng Li

Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair, Kathiresan Selvam, Sheikh Arafatur Rahman, and Shisheng Li

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Frequent fire reorganizes fungal communities and slows decomposition across a heterogeneous pine savanna landscape, Tatiana A. Semenova-Nelsen, William J. Platt, Taylor R. Patterson, Jean Huffman, and Benjamin A. Sikes

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Sexually dimorphic oxytocin receptorexpressing neurons in the preoptic area of the mouse brain, Kaustubh Sharma, Ryan LeBlanc, Masudul Haque, Katsuhiko Nishimori, Madigan M. Reid, and Ryoichi Teruyama

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The link between purine metabolism and production of antibiotics in streptomyces, Smitha Sivapragasam and Anne Grove

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Environmentally persistent free radicals: Linking air pollution and poor respiratory health?, Peter D. Sly, Stephania A. Cormier, Slawomir Lomnicki, Jeffrey N. Harding, Keith Grimwood, and Griffith University

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Children’s environmental health in south and Southeast Asia: Networking for better child health outcomes, Peter D. Sly, Brittany Trottier, David Carpenter, Ubon Cha’on, Stephania Cormier, Betsy Galluzzo, Samayita Ghosh, Fiona Goldizen, Michelle Heacock, Paul Jagals, et al.

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Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field, Paul F. South, Amanda P. Cavanagh, Helen W. Liu, and Donald R. Ort

Erratum: Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field (Science DOI: 10.1126/science.aat9077), P. F. South, A. P. Cavanagh, H. W. Liu, and D. R. Ort

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Description of a New Species of Ponyfish (Teleostei: Leiognathidae: Equulitini: Photolateralis) from the Gulf of Oman, John S. Sparks and Prosanta Chakrabarty

MIR29B mediates epigenetic mechanisms of HBG gene activation, Athena Starlard-Davenport, Alana Smith, Luan Vu, Biaoru Li, and Betty S. Pace

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The expression of adipose tissue-derived cardiotrophin-1 in humans with obesity, Jacqueline Stephens, Eric Ravussin, and Ursula White

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Amplification dynamics of platy-1 retrotransposons in the cebidae platyrrhine lineage, Jessica M. Storer, Jackson R. Mierl, Sarah A. Brantley, Breanna Threeton, Yahor Sukharutski, Lydia C. Rewerts, Corey P. St Romain, Madeline M. Foreman, Jasmine N. Baker, Jerilyn A. Walker, et al.

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Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers, Mekala Sundaram, Michael J. Donoghue, Aljos Farjon, Denis Filer, Sarah Mathews, Walter Jetz, and Andrew B. Leslie

A phylogenomic rodent tree reveals the repeated evolution of masseter architectures, Mark T. Swanson, Carl H. Oliveros, and Jacob A. Esselstyn

What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?, Ryan A. Tamashiro, Noor D. White, Michael J. Braun, Brant C. Faircloth, Edward L. Braun, and Rebecca T. Kimball

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Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs, Lana F. Thaljeh, J. Ainsley Rothschild, Misagh Naderi, Lyndon M. Coghill, Jeremy M. Brown, and Michal Brylinski

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Do global regulators hold the key to production of bacterial secondary metabolites?, Sudarshan Singh Thapa and Anne Grove

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From pampa to puna: Biogeography and diversification of a group of Neotropical obligate grassland birds (Anthus: Motacillidae), Paul van Els

Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays, Nicholas T. Vinciguerra, Whitney L. E. Tsai, Brant C. Faircloth, and John E. McCormack

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Photosystem II oxygen-evolving complex photoassembly displays an inverse H/D solvent isotope effect under chloride-limiting conditions, David J. Vinyard, Syed Lal Badshah, M. Rita Riggio, Divya Kaur, Annaliesa R. Fanguy, and M. R. Gunner

Occurrence and cycling of trace elements in ultramafic soils and their impacts on human health: A critical review, Meththika Vithanage, Prasanna Kumarathilaka, Christopher Oze, Suniti Karunatilake, Mihiri Seneviratne, Zeng-Yei Hseu, Viraj Gunarathne, Maheshi Dassanayake, Yong Sik Ok, and Jörg Rinklebe

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Elevated levels of type 2 respiratory innate lymphoid cells in human infants with severe respiratory syncytial virus bronchiolitis, Luan D. Vu, David Siefker, Tamekia L. Jones, Dahui You, Ryleigh Taylor, John DeVincenzo, and Stephania A. Cormier

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Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry, Jerilyn A. Walker, Vallmer E. Jordan, Jessica M. Storer, Cody J. Steely, Paulina Gonzalez-Quiroga, Thomas O. Beckstrom, Lydia C. Rewerts, Corey P. St. Romain, Catherine E. Rockwell, Jeffrey Rogers, et al.

PDID: Database of Experimental and Putative Drug Targets in Human Proteome, Chen Wang, Michal Brylinski, and Lukasz Kurgan

RNA sampling from tissue sections using infrared laser ablation, Kelin Wang, Fabrizio Donnarumma, Scott W. Herke, Chao Dong, Patrick F. Herke, and Kermit K. Murray

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Light-induced release of nitric oxide from the nitric oxide-bound CDGSH-type [2Fe–2S] clusters in mitochondrial protein Miner2, Yiming Wang, Jeonghoon Lee, and Huangen Ding

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Physiology of crapemyrtle bark scale, Acanthococcus lagerstroemiae (Kuwana), associated with seasonally altered cold tolerance, Zinan Wang, Yan Chen, Rodrigo Diaz, and Roger A. Laine

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A 1-dimensional sympagic-pelagic-benthic transport model (SPBM): Coupled simulation of ice, water column, and sediment biogeochemistry, suitable for arctic applications, Shamil Yakubov, Philip Wallhead, Elizaveta Protsenko, Evgeniy Yakushev, Svetlana Pakhomova, and Holger Brix

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Longitudinal effects of maternal love withdrawal and guilt induction on Chinese American preschoolers' bullying aggressive behavior, Jing Yu, Charissa S.L. Cheah, Craig H. Hart, Chongming Yang, and Joseph A. Olsen

Submissions from 2018

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The CSBG - LSU Gateway: Web based hosted gateway for computational system biology application tools from Louisiana state university, Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, and Marlon Pierce

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Loss of DBC1 (CCAR2) affects TNFα-induced lipolysis and Glut4 gene expression in murine adipocytes, Ashley A. Able, Allison J. Richard, and Jacqueline M. Stephens

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Modular perverse sheaves on flag varieties III: Positivity conditions, Pramod N. Achar and Simon Riche

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Reductive groups, the loop Grassmannian, and the Springer resolution, Pramod N. Achar and Simon Riche

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Mitogenomic divergence between three pairs of putative geminate fishes from Panama, Fernando Alda, Alexandria J. Adams, Prosanta Chakrabarty, and W. Owen McMillan

Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary, Michael E. Alfaro, Brant C. Faircloth, Richard C. Harrington, Laurie Sorenson, Matt Friedman, Christine E. Thacker, Carl H. Oliveros, David Černý, and Thomas J. Near

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Intraspecific variation in indirect plant–soil feedbacks influences a wetland plant invasion, Warwick J. Allen, Laura A. Meyerson, Andrew J. Flick, and James T. Cronin

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L-citrulline supplementation: Impact on cardiometabolic health, Timothy D. Allerton, David N. Proctor, Jacqueline M. Stephens, Tammy R. Dugas, Guillaume Spielmann, and Brian A. Irving

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Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses, Jasmine N. Baker, Jerilyn A. Walker, Michael W. Denham, Charles D. Loupe, and Mark A. Batzer

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Intergenic and intronic DNA hypomethylated regions as putative regulators of imprinted domains, Arundhati Bakshi, Corey L. Bretz, Terri L. Cain, and Joomyeong Kim

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Maternal encouragement of modest behavior, temperamental shyness, and anxious withdrawal linkages to Chinese American children's social adjustment: A moderated mediation analysis, Merve Balkaya, Charissa S.L. Cheah, Jing Yu, Craig H. Hart, and Shuyan Sun

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Making epidermal bladder cells bigger: Developmental-and salinity-induced endopolyploidy in a model halophyte, Bronwyn J. Barkla, Timothy Rhodes, Kieu Nga T. Tran, Chathura Wijesinghege, John C. Larkin, and Maheshi Dassanayake

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Impact of Model Violations on the Inference of Species Boundaries under the Multispecies Coalescent, Anthony J. Barley, Jeremy M. Brown, and Robert C. Thomson

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Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses, Mark Batzer, Jasmine N. Baker, Jerilyn A. Walker, Michael W. Denham, and Charles D. Loupe

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A spatiotemporal dna endoploidy map of the arabidopsis root reveals roles for the endocycle in root development and stress adaptation, Rahul Bhosale, Veronique Boudolf, Fabiola Cuevas, Ran Lu, Thomas Eekhout, Zhubing Hu, Gert Van Isterdael, Georgina M. Lambert, Fan Xu, Moritz K. Nowack, et al.

Heritability and genetic associations of triglyceride and HDL-C levels using pedigree-based and empirical kinships, Nicholas B. Blackburn, Arthur Porto, Juan M. Peralta, and John Blangero

Staining the Germline in Live : Overcoming Challenges by Applying a Fluorescent-dye Feeding Strategy, K Adam Bohnert

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Groundsel bush (Baccharis halimifolia) extract promotes adipocyte differentiation in vitro and increases adiponectin expression in mature adipocytes, Anik Boudreau, Scott Fuller, Davidm Ribnicky, Allison J. Richard, and Jacqueline M. Stephens

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An ethanolic extract of artemisia scoparia inhibits lipolysis in vivo and has antilipolytic effects on murine adipocytes in vitro, Anik Boudreau, Allison J. Richard, Jasmine A. Burrell, William T. King, Ruth Dunn, Jean Marc Schwarz, David M. Ribnicky, Jennifer Rood, J. Michael Salbaum, and Jacqueline M. Stephens

Plasma Amino Acids During 8 Weeks of Overfeeding: Relation to Diet Body Composition and Fat Cell Size in the PROOF Study, George A. Bray, Leanne M. Redman, Lilian de Jonge, Jennifer Rood, Elizabeth F. Sutton, and Steven R. Smith

Plasma fatty acyl-carnitines during 8 weeks of overfeeding: relation to diet energy expenditure and body composition: the PROOF study, George A. Bray, Leanne M. Redman, Lilian de Jonge, Jennifer Rood, Elizabeth F. Sutton, and Steven R. Smith

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Allele and dosage specificity of the Peg3 imprinted domain, Corey L. Bretz, Wesley D. Frey, Ryoichi Teruyama, and Joomyeong Kim

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Trans-allelic mutational effects at the Peg3 imprinted locus, Corey L. Bretz and Joomyeong Kim

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The behavior of metropolis-coupled Markov chains when sampling rugged phylogenetic distributions, Jeremy M. Brown and Robert C. Thomson

Evaluating Model Performance in Evolutionary Biology, Jeremy M. Brown and Robert C. Thomson

Evaluating Model Performance In Evolutionary Biology, J M. Brown and R C. Thomson

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Aromatic interactions at the ligand–protein interface: Implications for the development of docking scoring functions, Michal Brylinski

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eRepo-ORP: Exploring the Opportunity Space to Combat Orphan Diseases with Existing Drugs, Michal Brylinski, Misagh Naderi, Rajiv Gandhi Govindaraj, and Jeffrey Lemoine

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Pancreatic deletion of the interleukin-1 receptor disrupts whole body glucose homeostasis and promotes islet β-cell de-differentiation, Susan J. Burke, Heidi M. Batdorf, David H. Burk, Thomas M. Martin, Tamra Mendoza, Krisztian Stadler, Wateen Alami, Michael D. Karlstad, Matthew J. Robson, Randy D. Blakely, et al.

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Liquid Sucrose Consumption Promotes Obesity and Impairs Glucose Tolerance Without Altering Circulating Insulin Levels, Susan J. Burke, Heidi M. Batdorf, Thomas M. Martin, David H. Burk, Robert C. Noland, Christopher R. Cooley, Michael D. Karlstad, William D. Johnson, and J. Jason Collier

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Phylogenomics of pike cichlids (Cichlidae: Crenicichla): the rapid ecological speciation of an incipient species flock, E. D. Burress, F. Alda, A. Duarte, M. Loureiro, J. W. Armbruster, and P. Chakrabarty

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Neural and behavioural correlates of repeated social defeat, Julie M. Butler, Sarah M. Whitlow, David A. Roberts, and Karen P. Maruska

Opinion: How to tackle the childcare–conference conundrum, Rebecca M. Calisi and

Synthesis and in vitro PDT evaluation of new porphyrins containing meso-epoxymethylaryl cationic groups, Jaqueline Carneiro, Alan Gonçalves, Zehua Zhou, Kaitlin E. Griffin, Nichole E. Kaufman, and Maria da Vicente

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My year as a fed, Prosanta Chakrabarty

Assessing Water Resources Vulnerability by Using a Rough Set Cloud Model: A Case Study of the Huai River Basin, China, Yan Chen, Yazhong Feng, Fan Zhang, and Lei Wang

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Gauging support for macroecological patterns in helminth parasites, Tad A. Dallas, A. Alonso Aguirre, Sarah Budischak, Colin Carlson, Vanessa Ezenwa, Barbara Han, Shan Huang, and Patrick R. Stephens

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Habitat suitability estimated by niche models is largely unrelated to species abundance, Tad A. Dallas and Alan Hastings

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Experimental evidence of a pathogen invasion threshold, Tad A. Dallas, Martin Krkošek, and John M. Drake

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Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia, Gillian H. Dean, Rani Asmarayani, Marlina Ardiyani, Yessi Santika, Teguh Triono, Sarah Mathews, and Campbell O. Webb

Phenotypic and transcriptomic responses to salinity stress across genetically and geographically divergent Tigriopus californicus populations, Melissa B. DeBiasse, Yasmeen Kawji, and Morgan W. Kelly

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Future research directions in pneumonia, Charles S. Dela Cruz, Richard G. Wunderink, David C. Christiani, Stephania A. Cormier, Kristina Crothers, Claire M. Doerschuk, Scott E. Evans, Daniel R. Goldstein, Purvesh Khatri, Lester Kobzik, et al.

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Ecological drivers of song evolution in birds: Disentangling the effects of habitat and morphology, Elizabeth Perrault Derryberry, Nathalie Seddon, Graham Earnest Derryberry, Santiago Claramunt, Glenn Fairbanks Seeholzer, Robb Thomas Brumfield, and Joseph Andrew Tobias

The many types of carbonic anhydrases in photosynthetic organisms, Robert J. DiMario, Marylou C. Machingura, Grover L. Waldrop, and James V. Moroney

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Contrasting impacts of competition on ecological and social trait evolution in songbirds, Jonathan P. Drury, Joseph A. Tobias, Kevin J. Burns, Nicholas A. Mason, Allison J. Shultz, and Hélène Morlon

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Inhibition of endocytosis suppresses the nitric oxide-dependent release of Cl- in retinal amacrine cells, Vernon K. Dunn and Evanna Gleason

No appendix necessary: Fecal transplants and antibiotics can resolve Clostridium difficile infection, Bret Elderd

Overdispersed Spatial Patterning of Dominant Bunchgrasses in Southeastern Pine Savannas, Bret Elderd

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Climate change and an invasive, tropical milkweed: an ecological trap for monarch butterflies, Matthew J. Faldyn, Mark D. Hunter, and Bret D. Elderd

Transcriptomic view of survival during early seedling growth of the extremophyte Haloxylon ammodendron, Ligang Fan, Guannan Wang, Wei Hu, Pramod Pantha, Kieu-Nga Tran, Hua Zhang, Lizhe An, and Maheshi Dassanayake

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Sexually-relevant visual and chemosensory signals induce distinct behaviors and neural activation patterns in the social african cichlid, astatotilapia burtoni, Karen E. Field, Christopher T. McVicker, and Karen P. Maruska

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Gymnosperms on the EDGE, Félix Forest, Justin Moat, Elisabeth Baloch, Neil A. Brummitt, Steve P. Bachman, Steffi Ickert-Bond, Peter M. Hollingsworth, Aaron Liston, Damon P. Little, Sarah Mathews, et al.

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Oxytocin receptor is regulated by Peg3, Wesley D. Frey, Kaustubh Sharma, Terri L. Cain, Katsuhiko Nishimori, Ryoichi Teruyama, and Joomyeong Kim