Submissions from 2017
Niche evolution and diversification in a Neotropical radiation of birds (Aves: Furnariidae), Glenn F. Seeholzer, Santiago Claramunt, and Robb T. Brumfield
Tapping the woodpecker tree for evolutionary insight, Subir B. Shakya, Jérôme Fuchs, Jean-Marc Pons, and Frederick H. Sheldon
Effect of dietary salt intake on epithelial Na+ channels (ENaC) in vasopressin magnocellular neurosecretory neurons in the rat supraoptic nucleus, Kaustubh Sharma, Masudul Haque, Richard Guidry, Yoichi Ueta, and Ryoichi Teruyama
The Effectiveness of eHealth Technologies on Weight Management in Pregnant and Postpartum Women: Systematic Review and Meta-Analysis, Diana Sherifali, Kara A. Nerenberg, Shanna Wilson, Kevin Semeniuk, Muhammad Usman Ali, Leanne M. Redman, and Kristi B. Adamo
Plant genotype and induced defenses affect the productivity of an insect-killing obligate viral pathogen, Ikkei Shikano, Elizabeth M. McCarthy, Bret D. Elderd, and Kelli Hoover
A full set of iridium(iv) pyridine-alkoxide stereoisomers: highly geometry-dependent redox properties, Dimitar Y. Shopov, Benjamin Rudshteyn, Jesús Campos, David J. Vinyard, Victor S. Batista, Gary W. Brudvig, and Robert H. Crabtree
IL-4Rα on dendritic cells in neonates and Th2 immunopathology in respiratory syncytial virus infection, Bishwas Shrestha, Dahui You, Jordy Saravia, David T. Siefker, Sridhar Jaligama, Greg I. Lee, Asmaa A. Sallam, Jeffrey N. Harding, and Stephania A. Cormier
The Stringent Response Induced by Phosphate Limitation Promotes Purine Salvage in Agrobacterium fabrum, Smitha Sivapragasam, Dinesh K. Deochand, Jacob K. Meariman, and Anne Grove
A latitudinal phylogeographic diversity gradient in birds, Brian Tilston Smith, Glenn F. Seeholzer, Michael G. Harvey, Andrés M. Cuervo, and Robb T. Brumfield
Erratum: Correction: A latitudinal phylogeographic diversity gradient in birds (PLoS biology (2017) 15 4 (e2001073)), Brian Tilston Smith, Glenn F. Seeholzer, Michael G. Harvey, Andrés M. Cuervo, and Robb T. Brumfield
Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana, Paul F. South, Berkley J. Walker, Amanda P. Cavanagh, Vivien Rolland, Murray Badger, and Donald R. Ort
Effects of 12 Months of Caloric Restriction on Muscle Mitochondrial Function in Healthy Individuals, Lauren M. Sparks, Leanne M. Redman, Kevin E. Conley, Mary-Ellen Harper, Fanchao Yi, Andrew Hodges, Alexey Eroshkin, and Sheila R. Costford
The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies, Joseph W. Spatafora, M Catherine Aime, Igor V. Grigoriev, Francis Martin, Jason E. Stajich, and Meredith Blackwell
Vaccination of rhesus macaques with the live-attenuated HSV-1 vaccine VC2 stimulates the proliferation of mucosal T cells and germinal center responses resulting in sustained production of highly neutralizing antibodies, Brent A. Stanfield, Bapi Pahar, Vladimir N. Chouljenko, Ronald Veazey, and Konstantin G. Kousoulas
High phylogenetic utility of an ultraconserved element probe set designed for Arachnida, James Starrett, Shahan Derkarabetian, Marshal Hedin, Robert W. Bryson Jr., John E. McCormack, and Brant C. Faircloth
Alu insertion polymorphisms as evidence for population structure in baboons, Cody J. Steely, Jerilyn A. Walker, Vallmer E. Jordan, Thomas O. Beckstrom, Cullen L. McDaniel, Corey P. St Romain, Emily C. Bennett, Arianna Robichaux, Brooke N. Clement, Muthuswamy Raveendran, et al.
Strategies for Successful Recruitment of Pregnant Patients Into Clinical Trials, Elizabeth F. Sutton, Loren E. Cain, Porsha M. Vallo, and Leanne M. Redman
Adverse metabolic phenotype of female offspring exposed to preeclampsia in utero: a characterization of the BPH/5 mouse in postnatal life, Elizabeth F. Sutton, Heinrich E. Lob, Jiunn Song, YunWei Xia, Scott Butler, Chin-Chi Liu, Leanne M. Redman, and Jenny L. Sones
Coordinated dispersal and pre-isthmian assembly of the central American ichthyofauna, Victor A. Tagliacollo, Scott M. Duke-Sylvester, Wilfredo A. Matamoros, Prosanta Chakrabarty, and James S. Albert
Anaerobic copper toxicity and iron-sulfur cluster biogenesis in Escherichia coli, Guoqiang Tan, Jing Yang, Tang Li, Jin Zhao, Shujuan Sun, Xiaokang Li, Chuxian Lin, Jianghui Li, Huaibin Zhou, Jianxin Lyu, et al.
A communal catalogue reveals Earth's multiscale microbial diversity, Luke R. Thompson, Jon G. Sanders, Daniel McDonald, Amnon Amir, Joshua Ladau, Kenneth J. Locey, Robert J. Prill, Anupriya Tripathi, Sean M. Gibbons, Gail Ackermann, et al.
Phylogenetic relationships of Burmeistera (Campanulaceae: Lobelioideae): Combining whole plastome with targeted loci data in a recent radiation, Simon Uribe-Convers, Monica M. Carlsen, Laura P. Lagomarsino, and Nathan Muchhala
Cannibalism and infectious disease: Friends or foes?, Benjamin G. Van Allen, Forrest P. Dillemuth, Andrew J. Flick, Matthew J. Faldyn, David R. Clark, Volker H.W. Rudolf, and Bret D. Elderd
Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils, Matthew H. Van Dam, Athena W. Lam, Katayo Sagata, Bradley Gewa, Raymond Laufa, Michael Balke, Brant C. Faircloth, and Alexander Riedel
Combining biodiversity resurveys across regions to advance global change research, Kris Verheyen, Pieter De Frenne, Lander Baeten, Donald M. Waller, Radim Hédl, Michael P. Perring, Haben Blondeel, Jörg Brunet, Markéta Chudomelová, Guillaume Decocq, et al.
Cationic ionic liquid surfactant-polyacrylamide gel electrophoresis for enhanced separation of acidic and basic proteins with single-step ribonuclease b glycoforms separation, Punprabhashi Vidanapathirana, Farhana Hasan, Kaitlyn Mussio, Anuja Pande, Michael Brands, Noureen Siraj, Anne Grove, and Isiah M. Warner
The impact of phenotypic and molecular data on the inference of Colletotrichum diversity associated with Musa, Willie A. Vieira, Waléria G. Lima, Eduardo S. Nascimento, Sami J. Michereff, Marcos P. Câmara, and Vinson P. Doyle
Thiophanate-Methyl Resistance and Fitness Components of Colletotrichum musae Isolates from Banana in Brazil, Willie Anderson Vieira, Waléria Guerreiro Lima, Eduardo Souza Nascimento, Sami Jorge Michereff, Ailton Reis, Vinson P. Doyle, and Marcos Paz Câmara
Progress Toward a Molecular Mechanism of Water Oxidation in Photosystem II, David J. Vinyard and Gary W. Brudvig
Energetics of the S2 State Spin Isomers of the Oxygen-Evolving Complex of Photosystem II, David J. Vinyard, Sahr Khan, Mikhail Askerka, Victor S. Batista, and Gary W. Brudvig
Papio baboon species indicative Alu elements, Jerilyn A. Walker, Vallmer E. Jordan, Cody J. Steely, Thomas O. Beckstrom, Cullen L. McDaniel, Corey P. St Romain, Emily C. Bennett, Arianna Robichaux, Brooke N. Clement, Miriam K. Konkel, et al.
FGF21 mediates the thermogenic and insulin-sensitizing effects of dietary methionine restriction but not its effects on hepatic lipid metabolism, Desiree Wanders, Laura A. Forney, Kirsten P. Stone, David H. Burk, Alicia Pierse, and Thomas W. Gettys
Structural basis of antifreeze activity of a bacterial multi-domain antifreeze protein, Chen Wang, Svetlana Pakhomova, Marcia E. Newcomer, Brent C. Christner, and Bing Hao Luo
Infrared laser ablation sample transfer of tissue DNA for genomic analysis, Kelin Wang, Fabrizio Donnarumma, Scott W. Herke, Patrick F. Herke, and Kermit K. Murray
Binding of Herpes Simplex Virus 1 UL20 to GODZ (DHHC3) Affects Its Palmitoylation and Is Essential for Infectivity and Proper Targeting and Localization of UL20 and Glycoprotein K, Shaohui Wang, Kevin R. Mott, Kolja Wawrowsky, Konstantin G. Kousoulas, Bernhard Luscher, and Homayon Ghiasi
The mitochondrial outer membrane protein mitoNEET is a redox enzyme catalyzing electron transfer from FMNH2 to oxygen or ubiquinone, Yiming Wang, Aaron P. Landry, and Huangen Ding
Examination of carnitine palmitoyltransferase 1 abundance in white adipose tissue: implications in obesity research, Jaycob D. Warfel, Bolormaa Vandanmagsar, Olga S. Dubuisson, Sydney M. Hodgeson, Carrie M. Elks, Eric Ravussin, and Randall L. Mynatt
Volcanic soils as sources of novel CO-oxidizing Paraburkholderia and Burkholderia: Paraburkholderia hiiakae sp. nov., Paraburkholderia metrosideri sp. nov., Paraburkholderia paradisi sp. nov., Paraburkholderia peleae sp. nov., and Burkholderia alpina sp. nov. a member of the Burkholderia cepacia complex, Carolyn F. Weber and Gary M. King
Particulate Matter Exposure Predicts Residence In High Risk Areas For Community-Acquired Pneumonia Among Hospitalized Children In A Metropolitan Area, J. M. Wesley, T. Oyana, A. Bramley, S. Jain, J. A. McCullers, S. R. Arnold, and S. A. Cormier
Synthesis and Spectroscopic Investigation of a Series of Push-Pull Boron Dipyrromethenes (BODIPYs), Sunting Xuan, Ning Zhao, Xiangyi Ke, Zehua Zhou, Frank R. Fronczek, Karl M. Kadish, Kevin M. Smith, and M Graça Vicente
Bottom RedOx Model (BROM v.1.1): A coupled benthic-pelagic model for simulation of water and sediment biogeochemistry, Evgeniy V. Yakushev, Elizaveta A. Protsenko, Jorn Bruggeman, Philip Wallhead, Svetlana V. Pakhomova, Shamil Kh Yakubov, Richard G.J. Bellerby, and Raoul Marie Couture
PEG3 control on the mammalian MSL Complex, An Ye, Hana Kim, and Joomyeong Kim
Synthesis of BODIPY-Peptide Conjugates for Fluorescence Labeling of EGFR Overexpressing Cells, Ning Zhao, Tyrslai M. Williams, Zehua Zhou, Frank R. Fronczek, Martha Sibrian-Vazquez, Seetharama D. Jois, and M Graça Vicente
Synthesis and Spectroscopic and Cellular Properties of Near-IR [a]Phenanthrene-Fused 4,4-Difluoro-4-bora-3a,4a-diaza-s-indacenes, Ning Zhao, Sunting Xuan, Zehua Zhou, Frank R. Fronczek, Kevin M. Smith, and M Graça Vicente
Lower Doses of Fructose Extend Lifespan in Caenorhabditis elegans, Jolene Zheng, Chenfei Gao, Mingming Wang, Phuongmai Tran, Nancy Mai, John W. Finley, Steven B. Heymsfield, Frank L. Greenway, Zhaoping Li, David Heber, et al.
Submissions from 2016
Modular generalized Springer correspondence I: The general linear group, Pramod N. Achar, Anthony Henderson, Daniel Juteau, and Simon Riche
Modular perverse sheaves on flag varieties, II: Koszul duality and formality, Pramod N. Achar and Simon Riche
Modular perverse sheaves on flag varieties I: Tilting and parity sheaves, Pramod N. Achar, Simon Riche, and Geordie Williamson
The affine Grassmannian and the Springer resolution in positive characteristic, Pramod N. Achar and Laura Rider
A single amino-acid substitution in the sodium transporter HKT1 associated with plant salt tolerance, Akhtar Ali, Natalia Raddatz, Rashid Aman, Songmi Kim, Hyeong Cheol Park, Masood Jan, Dongwon Baek, Irfan Ullah Khan, Dong Ha Oh, Sang Yeol Lee, et al.
Development and Application of the Remote Food Photography Method to Measure Food Intake in Exclusively Milk Fed Infants: A Laboratory-Based Study, Abby D. Altazan, L Anne Gilmore, Jeffrey H. Burton, Shelly A. Ragusa, John W. Apolzan, Corby K. Martin, and Leanne M. Redman
EmpPrior: Using outside empirical data to inform branch-length priors for Bayesian phylogenetics, John J. Andersen, Bradley J. Nelson, and Jeremy M. Brown
S3 State of the O2-Evolving Complex of Photosystem II: Insights from QM/MM, EXAFS, and Femtosecond X-ray Diffraction, Mikhail Askerka, Jimin Wang, David J. Vinyard, Gary W. Brudvig, and Victor S. Batista
DNA methylation variation of human-specific Alu repeats, Arundhati Bakshi, Scott W. Herke, Mark A. Batzer, and Joomyeong Kim
A Framework for Implementing Course-Based Undergraduate Research Experiences (CUREs) in Freshman Biology Labs, Arundhati Bakshi, Lorelei E. Patrick, and E. William Wischusen
Phylogenetic turnover along local environmental gradients in tropical forest communities, C. A. Baldeck, S. W. Kembel, K. E. Harms, J. B. Yavitt, R. John, B. L. Turner, S. Madawala, N. Gunatilleke, S. Gunatilleke, S. Bunyavejchewin, et al.
DNA methylation variation of human-specific Alu repeats, Mark A. Batzer, Arundhati Bakshi, Scott W. Herke, and Joomyeong J. Kim
Membrane-dependent activities of human 15-lox-2 and its murine counterpart implications for murine models of atherosclerosis, Gunes Bender, Erin E. Schexnaydre, Robert C. Murphy, Charis Uhlson, and Marcia E. Newcomer
Response to Blossey and Casagrande: ecological and evolutionary processes make host specificity at the subspecies level exceedingly unlikely, Ganesh P. Bhattarai, Warwick J. Allen, James T. Cronin, Erik Kiviat, and Laura A. Meyerson
Social wasps promote social behavior in Saccharomyces spp, Meredith Blackwell and Cletus P. Kurtzman
The Raf-like kinase ILK1 and the high affinity K+ transporter HAK5 are required for innate immunity and abiotic stress response, Elizabeth K. Brauer, Nagib Ahsan, Renee Dale, Naohiro Kato, Alison E. Coluccio, Miguel A. Piñeros, Leon V. Kochian, Jay J. Thelen, and Sorina C. Popescu
Effect of Three Levels of Dietary Protein on Metabolic Phenotype of Healthy Individuals With 8 Weeks of Overfeeding, George A. Bray, Leanne M. Redman, Lilian de Jonge, Jennifer Rood, and Steven R. Smith
Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae), R.W. Bryson, B.C. Faircloth, W.L.E. Tsai, J.E. McCormack, and J. Klicka
Copper(II) Ions Increase Plasminogen Activator Inhibitor Type 1 Dynamics in Key Structural Regions That Govern Stability, Joel C. Bucci, Morten Beck Trelle, Carlee S. Mcclintock, Tihami Qureshi, Thomas J.D. Jørgensen, and Cynthia B. Peterson
Pancreatic β-Cell production of CXCR3 ligands precedes diabetes onset, Susan J. Burke, Michael D. Karlstad, Adrianna E. Eder, Kellie M. Regal, Danhong Lu, David H. Burk, and J. Jason Collier
Cobalt chloride treatment used to ablate the lateral line system also impairs the olfactory system in three freshwater fishes, Julie M. Butler, Karen E. Field, and Karen P. Maruska
Mechanosensory signaling as a potential mode of communication during social interactions in fishes, Julie M. Butler and Karen P. Maruska
The mechanosensory lateral line system mediates activation of socially-relevant brain regions during territorial interactions, Julie M. Butler and Karen P. Maruska
Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences, Luis M.P. Ceríaco, Eliécer E. Gutiérrez, Alain Dubois, Cristian Simón Abdala, Abdulaziz S. Alqarni, Kraig Adler, Edson A. Adriano, Erna Aescht, Ishan Agarwal, Sabine Agatha, et al.
Five years later: An update on the status of collections of endemic gulf of Mexico fishes put at risk by the 2010 oil spill, Prosanta Chakrabarty, Glynn A. O'Neill, Brannon Hardy, and Brandon Ballengee
Carbon sequestration potential of second-growth forest regeneration in the Latin American tropics, Robin L. Chazdon, Eben N. Broadbent, Danaë M. Rozendaal, Frans Bongers, Angélica María Zambrano, T Mitchell Aide, Patricia Balvanera, and Justin M. Becknell
Parenting hassles mediate predictors of Chinese and Korean immigrants’ psychologically controlling parenting, Charissa S.L. Cheah, Jing Yu, Craig H. Hart, Sevgi Bayram Özdemir, Shuyan Sun, Nan Zhou, Joseph A. Olsen, and Momoka Sunohara
Fatty acids differ significantly in castes of the Formosan subterranean termite (Isoptera: Rhinotermitidae), Zhaorigetu Chen and Roger A. Laine
Autophagy is essential for ultrafine particle-induced inflammation and mucus hyperproduction in airway epithelium, Zhi Hua Chen, Yin Fang Wu, Ping Li Wang, Yan Ping Wu, Zhou Yang Li, Yun Zhao, Jie Sen Zhou, Chen Zhu, Chao Cao, Yuan Yuan Mao, et al.
Herpes simplex virus 1 UL37 protein tyrosine residues conserved among all alphaherpesviruses are required for interactions with glycoprotein K, cytoplasmic virion envelopment, and infectious virus production, Dmitry V. Chouljenko, Nithya Jambunathan, Vladimir N. Chouljenko, Misagh Naderi, Michal Brylinski, John R. Caskey, and Konstantin G. Kousoulas
The effect of demographic correlations on the stochastic population dynamics of perennial plants, Aldo Compagnoni, Andrew J. Bibian, Brad M. Ochocki, Haldre S. Rogers, Emily L. Schultz, Michelle E. Sneck, Bret D. Elderd, Amy M. Iler, David W. Inouye, Hans Jacquemyn, et al.
Myokine Expression in Muscle and Myotubes in Response to Exercise Stimulation, Jeffrey D. Covington, Charmaine S. Tam, Sudip Bajpeyi, Jose E. Galgani, Robert C. Noland, Steven R. Smith, Leanne M. Redman, and Eric Ravussin
Higher circulating leukocytes in women with PCOS is reversed by aerobic exercise, Jeffrey D. Covington, Charmaine S. Tam, Magdalena Pasarica, and Leanne M. Redman
Biological control of invasive Phragmites australis will be detrimental to native P. australis, James T. Cronin, Erik Kiviat, Laura A. Meyerson, Ganesh P. Bhattarai, and Warwick J. Allen
Variable prey development time suppresses predator-prey cycles and enhances stability, James T. Cronin, John D. Reeve, Dashun Xu, Mingqing Xiao, and Heidi N. Stevens
Truly quantitative analysis of the firefly luciferase complementation assay, Renee Dale and Naohiro Kato
Mathematical model of the firefly luciferase complementation assay reveals a non-linear relationship between the detected luminescence and the affinity of the protein pair being analyzed, Renee Dale, Yuki Ohmuro-Matsuyama, Hiroshi Ueda, and Naohiro Kato
HelminthR: An R interface to the London Natural History Museum's Host-Parasite Database, Tad Dallas
Fluctuating temperatures alter environmental pathogen transmission in a Daphnia–pathogen system, Tad Dallas and John M. Drake
Competition-mediated feedbacks in experimental multispecies epizootics, Tad Dallas, Richard J. Hall, and John M. Drake
Costs of resistance and infection by a generalist pathogen, Tad Dallas, Mathieu Holtackers, and John M. Drake
Plastic and evolved responses to global change: What can we learn from comparative transcriptomics?, Melissa B. DeBiasse and Morgan W. Kelly
Shared phylogeographical breaks in a Caribbean coral reef sponge and its invertebrate commensals, Melissa B. DeBiasse, Vincent P. Richards, Mahmood S. Shivji, and Michael E. Hellberg
Local endemism and within-island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity, Terrence C. Demos, Anang S. Achmadi, Thomas C. Giarla, Heru Handika, Maharadatunkamsi, Kevin C. Rowe, and Jacob A. Esselstyn
PH-Dependent DNA Distortion and Repression of Gene Expression by Pectobacterium atrosepticum PecS, Dinesh K. Deochand, Jacob K. Meariman, and Anne Grove
Histidine switch controlling pH-dependent protein folding and DNA binding in a transcription factor at the core of synthetic network devices, D. K. Deochand, I. C. Perera, R. B. Crochet, N. C. Gilbert, M. E. Newcomer, and A. Grove
The cytoplasmic carbonic anhydrases βCA2 and βCA4 are required for optimal plant growth at low CO2, Robert J. DiMario, Jennifer C. Quebedeaux, David J. Longstreth, Maheshi Dassanayake, Monica M. Hartman, and James V. Moroney
Iron homeostasis and iron-sulfur cluster assembly in Escherichia coli, Huangen Ding
Assessing the similarity of ligand binding conformations with the Contact Mode Score, Yun Ding, Ye Fang, Juana Moreno, J. Ramanujam, Mark Jarrell, and Michal Brylinski
A member of the Phosphate transporter 1 (Pht1) family from the arsenic-hyperaccumulating fern Pteris vittata is a high-affinity arsenate transporter, Sandra Feuer Ditusa, Elena B. Fontenot, Robert W. Wallace, Molly A. Silvers, Thomas N. Steele, Alia H. Elnagar, Kelsey M. Dearman, and Aaron P. Smith
Addressing emerging risks: Scientific and regulatory challenges associated with environmentally persistent free radicals, Tammy R. Dugas, Slawomir Lomnicki, Stephania A. Cormier, Barry Dellinger, and Margaret Reams
Rearrangement and evolution of mitochondrial genomes in parrots, Jessica R. Eberhard and Timothy F. Wright
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics, S.V. Edwards, Z. Xi, A. Janke, B.C. Faircloth, J.E. McCormack, T.C. Glenn, B. Zhong, S. Wu, E.M. Lemmon, A.R. Lemmon, et al.
Quantifying demographic uncertainty: Bayesian methods for integral projection models, Bret D. Elderd and Tom E.X. Miller