Submissions from 2016
Vector species richness increases haemorrhagic disease prevalence through functional diversity modulating the duration of seasonal transmission, Andrew W. Park, Christopher A. Cleveland, Tad A. Dallas, and Joseph L. Corn
Variation in the whole mitogenome of reef-building Porites corals, David A. Paz-García, Carolina Galván-Tirado, Juan José Alvarado, Jorge Cortés, Francisco J. García-De-León, Michael E. Hellberg, and Eduardo F. Balart
Alternative promoters of Peg3 with maternal specificity, Bambarendage P.U. Perera and Joomyeong Kim
Next-generation sequencing-based 5′ rapid amplification of cDNA ends for alternative promoters, Bambarendage P.U. Perera and Joomyeong Kim
Sex and tissue specificity of Peg3 promoters, Bambarendage P.U. Perera and Joomyeong Kim
Insights from the pollination drop proteome and the ovule transcriptome of Cephalotaxus at the time of pollination drop production, Cary Pirone-Davies, Natalie Prior, Patrick Von Aderkas, Derek Smith, Darryl Hardie, William E. Friedman, and Sarah Mathews
Pyrogenic fuels produced by savanna trees can engineer humid savannas, William J. Platt, Darin P. Ellair, Jean M. Huffman, Stephen E. Potts, and Brian Beckage
Biomass resilience of Neotropical secondary forests, Lourens Poorter, Frans Bongers, T Mitchell Aide, Angélica M. Almeyda Zambrano, Patricia Balvanera, Justin M. Becknell, Vanessa Boukili, and Pedro H. Brancalion
Evolution of the Genotype-to-Phenotype Map and the Cost of Pleiotropy in Mammals, Arthur Porto, Ryan Schmelter, John L. VandeBerg, Gabriel Marroig, and James M. Cheverud
Distinct encounter complexes of PAI-1 with plasminogen activators and vitronectin revealed by changes in the conformation and dynamics of the reactive center loop, Tihami Qureshi, Sumit Goswami, Carlee S. McClintock, Matthew T. Ramsey, and Cynthia B. Peterson
Single fluorescence probes along the reactive center loop reveal site-specific changes during the latency transition of PAI-1, Tihami Qureshi and Cynthia B. Peterson
A Meta-analysis of Multiple Myeloma Risk Regions in African and European Ancestry Populations Identifies Putatively Functional Loci, Kristin A. Rand, Chi Song, Eric Dean, Daniel J. Serie, Karen Curtin, Xin Sheng, Donglei Hu, and Carol Ann Huff
A conceptual framework for graduate teaching assistant professional development evaluation and research, Todd D. Reeves, Gili Marbach-Ad, Kristen R. Miller, Judith Ridgway, Grant E. Gardner, Elisabeth E. Schussler, and E. William Wischusen
Astrocytes regulate GLP-1 receptor-mediated effects on energy balance, David J. Reiner, Elizabeth G. Mietlicki-Baase, Lauren E. McGrath, Derek J. Zimmer, Kendra K. Bence, Gregory L. Sousa, Vaibhav R. Konanur, Joanna Krawczyk, David H. Burk, Scott E. Kanoski, et al.
Comparative genomics of biotechnologically important yeasts, Robert Riley, Sajeet Haridas, Kenneth H. Wolfe, Mariana R. Lopes, Chris Todd Hittinger, Markus Göker, Asaf A. Salamov, and Jennifer H. Wisecaver
Editorial: Ethylene’s role in plant mineral nutrition, Francisco J. Romera, Aaron P. Smith, and Rafael Pérez-Vicente
The extrinsic proteins of photosystem II: update, Johnna L. Roose, Laurie K. Frankel, Manjula P. Mummadisetti, and Terry M. Bricker
Characterization of the drosophila BEAF-32A and BEAF-32B insulator proteins, S. V. Satya Prakash Avva and Craig M. Hart
Status of the Archaeal and Bacterial Census: an Update, Patrick D. Schloss, Rene A. Girard, Thomas Martin, Joshua Edwards, and J Cameron Thrash
The effects of high fat diet and estradiol on hypothalamic prepro-QRFP mRNA expression in female rats, Allyson L. Schreiber, Kenneth P. Arceneaux, Raphael A. Malbrue, Alan J. Mouton, Christina S. Chen, Elias M. Bench, H Douglas Braymer, and Stefany D. Primeaux
Regulation of inflammatory biomarkers by intravenous methylprednisolone in pediatric ARDS patients: Results from a double-blind, placebo-controlled randomized pilot trial, Andreas Schwingshackl, Dai Kimura, Cynthia R. Rovnaghi, Jordy S. Saravia, Stephania A. Cormier, Bin Teng, Alina N. West, Umberto G. Meduri, and Kanwaljeet J.S. Anand
New compartment model analysis of lean-mass and fat-mass growth with overfeeding, Dmytro Shumilov, Steven B. Heymsfield, Leanne M. Redman, Steven R. Smith, George A. Bray, Kesava Kalluri, and Joyoni Dey
The influence of genetic diversity on neonatal respiratory syncytial virus disease, D. Siefker, R. W. Williams, L. Lu, D. H. You, and S. Cormier
Mechanisms of regulation of invasive processes in phytoplankton on the example of the north-eastern part of the Black Sea, V. A. Silkin, A. I. Abakumov, L. A. Pautova, S. V. Pakhomova, and A. V. Lifanchuk
Crystal Structure of Carboxyltransferase from Staphylococcus aureus Bound to the Antibacterial Agent Moiramide B, Molly A. Silvers, Svetlana Pakhomova, David B. Neau, William C. Silvers, Nicholas Anzalone, Carol M. Taylor, and Grover L. Waldrop
Environmental stress in the Gulf of Mexico and its potential impact on public health, B. Singleton, J. Turner, L. Walter, N. Lathan, D. Thorpe, P. Ogbevoen, J. Daye, D. Alcorn, S. Wilson, J. Semien, et al.
Streptomyces coelicolor XdhR is a direct target of (p)ppGpp that controls expression of genes encoding xanthine dehydrogenase to promote purine salvage, Smitha Sivapragasam and Anne Grove
Methods for Efficient Elimination of Mitochondrial DNA from Cultured Cells, Domenico Spadafora, Nataliya Kozhukhar, Vladimir N. Chouljenko, Konstantin G. Kousoulas, and Mikhail F. Alexeyev
Differences in Mitochondrial Coupling Reveal a Novel Signature of Mitohormesis in Muscle of Healthy Individuals, Lauren M. Sparks, Leanne M. Redman, Kevin E. Conley, Mary-Ellen Harper, Andrew Hodges, Alexey Eroshkin, Sheila R. Costford, and Meghan E. Gabriel
IGF1 and adipose tissue homeostasis, Jacqueline M. Stephens
Exposure to environmentally persistent free radicals during gestation lowers energy expenditure and impairs skeletal muscle mitochondrial function in adult mice, Erin J. Stephenson, Alyse Ragauskas, Sridhar Jaligama, Jeanna R. Redd, Jyothi Parvathareddy, Matthew J. Peloquin, Jordy Saravia, Joan C. Han, Stephania A. Cormier, and Dave Bridges
The macroecology of infectious diseases: a new perspective on global-scale drivers of pathogen distributions and impacts, Patrick R. Stephens, Sonia Altizer, Katherine F. Smith, A. Alonso Aguirre, James H. Brown, Sarah A. Budischak, James E. Byers, Tad A. Dallas, T. Jonathan Davies, John M. Drake, et al.
Synthesis, Characterization, and Biological Studies of a Piperidinyl Appended Dipicolylamine Ligand and Its Rhenium Tricarbonyl Complex as Potential Therapeutic Agents for Human Breast Cancer, Amali Subasinghe, Inoka C. Perera, Svetlana Pakhomova, and Theshini Perera
No evidence for metabolic adaptation in thermic effect of food by dietary protein, Elizabeth F. Sutton, George A. Bray, Jeffrey H. Burton, Steven R. Smith, and Leanne M. Redman
Smartphone applications to aid weight loss and management: current perspectives, Elizabeth F. Sutton and Leanne M. Redman
Assessment of genetically engineered Trabulsiella odontotermitis as a 'Trojan Horse' for paratransgenesis in termites, Chinmay Vijay Tikhe, Thomas M. Martin, Andréa Howells, Jennifer Delatte, and Claudia Husseneder
Impaired Mitochondrial Fat Oxidation Induces FGF21 in Muscle, Bolormaa Vandanmagsar, Jaycob D. Warfel, Shawna E. Wicks, Sujoy Ghosh, J. Michael Salbaum, David Burk, Olga S. Dubuisson, Tamra M. Mendoza, Jingying Zhang, Robert C. Noland, et al.
Ammonia Binding in the Second Coordination Sphere of the Oxygen-Evolving Complex of Photosystem II, David J. Vinyard, Mikhail Askerka, Richard J. Debus, Victor S. Batista, and Gary W. Brudvig
Natural isoforms of the Photosystem II D1 subunit differ in photoassembly efficiency of the water-oxidizing complex, David J. Vinyard, Jennifer S. Sun, Javier Gimpel, Gennady M. Ananyev, Stephen P. Mayfield, and G. Charles Dismukes
MSH1 Is a Plant Organellar DNA Binding and Thylakoid Protein under Precise Spatial Regulation to Alter Development, Kamaldeep S S. Virdi, Yashitola Wamboldt, Hardik Kundariya, John D D. Laurie, Ido Keren, K. R. Sunil Kumar, Anna Block, Gilles Basset, Steve Luebker, Christian Elowsky, et al.
Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration, Berkley J. Walker, Paul F. South, and Donald R. Ort
A New Genus and Species of Blind Sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First Obligate Cave Gobiiform in the Western Hemisphere, Stephen J. Walsh and Prosanta Chakrabarty
PDID: Database of molecular-level putative protein-drug interactions in the structural human proteome, Chen Wang, Gang Hu, Kui Wang, Michal Brylinski, Lei Xie, and Lukasz Kurgan
Functional Analysis of a Bacterial Antifreeze Protein Indicates a Cooperative Effect between Its Two Ice-Binding Domains, Chen Wang, Erin E. Oliver, Brent C. Christner, and Bing Hao Luo
Transcription factor Reb1 is required for proper transcriptional start site usage at the divergently transcribed TFC6-ESC2 locus in Saccharomyces cerevisiae, Qing Wang and David Donze
14th congress of combustion by-products and their health effects—origin, fate, and health effects of combustion-related air pollutants in the coming era of bio-based energy sources, Eva Weidemann, Patrik L. Andersson, Terry Bidleman, Christoffer Boman, Danielle J. Carlin, Elena Collina, Stephania A. Cormier, Sandra C. Gouveia-Figueira, Brian K. Gullett, Christer Johansson, et al.
The modulation of adiponectin by STAT5-activating hormones, Ursula A. White, Joel Maier, Peng Zhao, Allison J. Richard, and Jacqueline M. Stephens
Persistence of neighborhood demographic influences over long phylogenetic distances may help drive post-speciation adaptation in tropical forests, Christopher Wills, Kyle E. Harms, Thorsten Wiegand, Ruwan Punchi-Manage, Gregory S. Gilbert, David Erickson, W. John Kress, Stephen P. Hubbell, C. V.Savitri Gunatilleke, and I. A.U.Nimal Gunatilleke
Synthesis and in Vitro Studies of a Series of Carborane-Containing Boron Dipyrromethenes (BODIPYs), Sunting Xuan, Ning Zhao, Zehua Zhou, Frank R. Fronczek, and M Graça Vicente
PEG3 binds to H19-ICR as a transcriptional repressor, An Ye, Hongzhi He, and Joomyeong Kim
Crawling with virus: Translational insights from a neonatal mouse model on the pathogenesis of respiratory syncytial virus in infants, Dahui You, Jordy Saravia, David Siefker, Bishwas Shrestha, and Stephania A. Cormier
Phenotypes in phylogeography: Species' traits, environmental variation, and vertebrate diversification, Kelly R. Zamudio, Rayna C. Bell, and Nicholas A. Mason
Hidden histories of gene flow in highland birds revealed with genomic markers, Eugenia Zarza, Brant C. Faircloth, Whitney L.E. Tsai, Robert W. Bryson Jr., John Klicka, and John E. McCormack
Dietary Plant Lectins Appear to Be Transported from the Gut to Gain Access to and Alter Dopaminergic Neurons of Caenorhabditis elegans, a Potential Etiology of Parkinson’s Disease, Jolene Zheng, Mingming Wang, Wenqian Wei, Jeffrey N. Keller, Binita Adhikari, Jason F. King, Michael L. King, Nan Peng, and Roger A. Laine
The Mouse-colored Tyrannulet (Phaeomyias murina) is a species complex that includes the Cocos Flycatcher (Nesotriccus ridgwayi), an island form that underwent a population bottleneck, Marc R. Zucker, Michael G. Harvey, Jessica A. Oswald, Andrés Cuervo, Elizabeth Derryberry, and Robb T. Brumfield
Submissions from 2015
On exotic and perverse-coherent sheaves, Pramod N. Achar
Geometric Satake, Springer correspondence, and small representations II, Pramod N. Achar, Anthony Henderson, and Simon Riche
Sheaves on nilpotent cones, fourier transform, and a geometric ringel duality, Pramod N. Achar and Carl Mautner
Constructible sheaves on affine Grassmannians and geometry of the dual nilpotent cone, Pramod N. Achar and Simon Riche
Parity sheaves on the affine Grassmannian and the Mirković–Vilonen conjecture, Pramod N. Achar and Laura Rider
An extract of Artemisia dracunculus L. stimulates insulin secretion from β cells, activates AMPK and suppresses inflammation, Sita Aggarwal, Giri Shailendra, David M. Ribnicky, David Burk, Namrata Karki, and M. S. Qingxia Wang
Multitrophic enemy escape of invasive Phragmites australis and its introduced herbivores in North America, Warwick J. Allen, Randee E. Young, Ganesh P. Bhattarai, Jordan R. Croy, Adam M. Lambert, Laura A. Meyerson, and James T. Cronin
Unusual Example of Chelate Ring Opening upon Coordination of the 9-Ethylguanine Nucleobase to [Pt(di-(6-methyl-2-picolyl)amine)Cl]Cl, Chase Andrepont, Svetlana Pakhomova, Patricia A. Marzilli, and Luigi G. Marzilli
NH3 Binding to the S2 State of the O2-Evolving Complex of Photosystem II: Analogue to H2O Binding during the S2 → S3 Transition, Mikhail Askerka, David J. Vinyard, Gary W. Brudvig, and Victor S. Batista
Analysis of the radiation-damage-free x-ray structure of photosystem ii in light of exafs and QM/MM data, Mikhail Askerka, David J. Vinyard, Jimin Wang, Gary W. Brudvig, and Victor S. Batista
A global reference for human genetic variation, Adam Auton, Gonçalo R. Abecasis, David M. Altshuler, Richard M. Durbin, David R. Bentley, Aravinda Chakravarti, Andrew G. Clark, Peter Donnelly, Evan E. Eichler, Paul Flicek, et al.
Biological evidence supports an early and complex emergence of the Isthmus of Panama, Christine D. Bacona, Daniele Silvestro, Carlos Jaramillo, Brian Tilston Smith, Prosanta Chakrabarty, and Alexandre Antonelli
Correction: Biological evidence supports an early and complex emergence of the Isthmus of Panama (Proceedings of National Academy of Sciences United States of America (2015), 112 (6110-6115) DOI: 10.1073/pnas.1423853112), Christine D. Bacon, Daniele Silvestro, Carlos Jaramillo, Brian Tilston Smith, Prosanta Chakrabarty, and Alexandre Antonelli
Erratum: Biological evidence supports an early and complex emergence of the Isthmus of Panama (Proceedings of the National Academy of Sciences of the United States of America (2015) 112:19 (6110-6115) DOI: 10.1073/pnas.1423853112), Christine D. Bacon, Daniele Silvestro, Carlos Jaramillo, Brian Tilston Smith, Prosanta Chakrabarty, and Alexandre Antonelli
Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and biases, Christine D. Bacon, Daniele Silvestro, Carlos Jaramillo, Brian Tilston Smith, Prosanta Chakrabarty, and Alexandre Antonelli
Locus-specific DNA methylation analysis of retrotransposons in ES, somatic and cancer cells using High-Throughput Targeted Repeat Element Bisulfite Sequencing, Arundhati Bakshi, Muhammad B. Ekram, and Joomyeong Kim
Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest, A. Barberán, K.L. Mcguire, J.A. Wolf, F.A. Jones, S.J. Wright, B.L. Turner, A. Essene, S.P. Hubbell, B.C. Faircloth, and N. Fierer
Interspecific competition affects evolutionary links between cavity nesting, migration and clutch size in Old World flycatchers (Muscicapdae), Sahas Barve and Nicholas A. Mason
High yield non-detergent isolation of photosystem I-light-harvesting chlorophyll II membranes from spinach thylakoids: Implications for the organization of the PS I antennae in higher plants, Adam J. Bell, Laurie K. Frankel, and Terry M. Bricker
Positive priming of terrestrially derived dissolved organic matter in a freshwater microcosm system, Thomas S. Bianchi, Daniel C.O. Thornton, Shari A. Yvon-Lewis, Gary M. King, Timothy I. Eglinton, Michael R. Shields, Nicholas D. Ward, and Jason Curtis
Experimental Support for a Single Electron-Transfer Oxidation Mechanism in Firefly Bioluminescence, Bruce R. Branchini, Curran E. Behney, Tara L. Southworth, Danielle M. Fontaine, Andrew M. Gulick, David J. Vinyard, and Gary W. Brudvig
Reciprocal osmotic challenges reveal mechanisms of divergence in phenotypic plasticity in the killifish Fundulus heteroclitus, Reid S. Brennan, Fernando Galvez, and Andrew Whitehead
Epigenetic instability at imprinting control regions in a KrasG12D-induced T-cell neoplasm, Corey L. Bretz, Ingeborg M. Langohr, Suman Lee, and Joomyeong Kim
Recent advances in the use of mass spectrometry to examine structure/function relationships in photosystem II, Terry M. Bricker, Manjula P. Mummadisetti, and Laurie K. Frankel
Structural Analysis of Substrate, Reaction Intermediate, and Product Binding in Haemophilus influenzae Biotin Carboxylase, Tyler C. Broussard, Svetlana Pakhomova, David B. Neau, Ross Bonnot, and Grover L. Waldrop
Correction: Functional characterization of the Chlamydomonas reinhardtii ERG3 ortholog, a gene involved in the biosynthesis of ergosterol, Kristy M. Brumfield, James V. Moroney, Thomas S. Moore, Tiffany A. Simms, and David Donze
CCL20 is elevated during obesity and differentially regulated by NF-κB subunits in pancreatic β-cells, Susan J. Burke, Michael D. Karlstad, Kellie M. Regal, Tim E. Sparer, Danhong Lu, Carrie M. Elks, Ryan W. Grant, Jacqueline M. Stephens, David H. Burk, and J. Jason Collier
Thiobenzothiazole-modified hydrocortisones display anti-inflammatory activity with reduced impact on islet β-cell function, Susan J. Burke, Amanda L. May, Robert C. Noland, Danhong Lu, Marcela Brissova, Alvin C. Powers, Elizabeth M. Sherrill, Michael D. Karlstad, Shawn R. Campagna, Jacqueline M. Stephens, et al.
IL-1β reciprocally regulates chemokine and insulin secretion in pancreatic β-cells via NF-κB, Susan J. Burke, Krisztian Stadler, Danhong Lu, Evanna Gleason, Anna Han, Dallas R. Donohoe, Richard C. Rogers, Gerlinda E. Hermann, Michael D. Karlstad, and J. Jason Collier
The mechanosensory lateral line is used to assess opponents and mediate aggressive behaviors during territorial interactions in an African cichlid fish, Julie M. Butler and Karen P. Maruska
Developmental changes in hypoxic exposure and responses to anoxia in Drosophila melanogaster, Viviane Callier, Steven C. Hand, Jacob B. Campbell, Taylor Biddulph, and Jon F. Harrison
Non-ionic water-soluble "clickable" α-helical polypeptides: Synthesis, characterization and side chain modification, Jinbao Cao, Ping Hu, Lu Lu, Brandon A. Chan, Bing Hao Luo, and Donghui Zhang
Amino acid specificity of fibers of the facial/trigeminal complex innervating the maxillary barbel in the Japanese sea catfish, Plotosus japonicus, John Caprio, Mami Shimohara, Takayuki Marui, Jun Kohbara, Shuitsu Harada, and Sadao Kiyohara
Externally and Internally Functionalized Copper(II) β-Diketonate Molecular Squares, Jackson K. Cherutoi, Jace D. Sandifer, Uttam R. Pokharel, Frank R. Fronczek, Svetlana Pakhomova, and Andrew W. Maverick
Binding of dinitrogen to an iron-sulfur-carbon site, Ilija Čorić, Brandon Q. Mercado, Eckhard Bill, David J. Vinyard, and Patrick L. Holland
Exposure to combustion-derived particulate matter: an unrecognized risk factor in severity of respiratory viral infection in infants, S. Cormier, G. Lee, J. Saravia, D. H. You, B. Shrestha, S. Jaligama, V. Hebert, and T. Dugas
Human adipose tissue as a reservoir for memory CD4+ T cells and HIV, Jacob Couturier, James W. Suliburk, Jeremy M. Brown, David J. Luke, Neeti Agarwal, Xiaoying Yu, Chi Nguyen, Dinakar Iyer, Claudia A. Kozinetz, Paul A. Overbeek, et al.
Human Adipose Tissue As A Reservoir For Memory Cd4(+) T Cells And Hiv, J Couturier, J W. Suliburk, J M. Brown, D J. Luke, J Couturier, X Y. Yu, C Nguyen, D Iyer, C A. Kozinetz, P A. Overbeek, et al.
Human Adipose Tissue As A Reservoir For Memory Cd4(+) T Cells And Hiv, J Couturier, J W. Suliburk, J M. Brown, D J. Luke, J Couturier, X Y. Yu, C Nguyen, D Iyer, C A. Kozinetz, P A. Overbeek, et al.
A phylogenomic analysis of turtles, N.G. Crawford, J.F. Parham, A.B. Sellas, B.C. Faircloth, T.C. Glenn, T.J. Papenfuss, J.B. Henderson, M.H. Hansen, and W.B. Simison
Biogeography of a plant invasion: Plant-herbivore interactions, James T. Cronin, Ganesh P. Bhattarai, Warwick J. Allen, and Laura A. Meyerson
Co-extinction in a host-parasite network: Identifying key hosts for network stability, Tad Dallas and Emily Cornelius
Toll-like receptor 4 inhibition within the paraventricular nucleus attenuates blood pressure and inflammatory response in a genetic model of hypertension, Rahul B. Dange, Deepmala Agarwal, Ryoichi Teruyama, and Joseph Francis
Effect of 12 weeks of periodized resistance training upon total plasma adiponectin concentration in healthy young men, Greggory R. Davis, Jacqueline M. Stephens, and Arnold G. Nelson
Discordance between morphological and molecular species boundaries among Caribbean species of the reef sponge Callyspongia, Melissa B. Debiasse and Michael E. Hellberg