Submissions from 2014
Molecular and biogeochemical evidence for methane cycling beneath the western margin of the Greenland Ice Sheet, Markus Dieser, Erik L.J.E. Broemsen, Karen A. Cameron, Gary M. King, Amanda Achberger, Kyla Choquette, Birgit Hagedorn, Ron Sletten, Karen Junge, and Brent C. Christner
Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster, Vinson P. Doyle, John J. Andersen, Bradley J. Nelson, Michael L. Metzker, and Jeremy M. Brown
Untangling The Influences Of Unmodeled Evolutionary Processes On Phylogenetic Signal In A Forensically Important Hiv-1 Transmission Cluster, V P. Doyle, J J. Andersen, B J. Nelson, M L. Metzker, and V P. Doyle
Two New Species of Freziera (Pentaphylacaceae) from Costa Rica, Santamaría-Aguilar D, Monro AK, Jiménez-Madrigal Q, and Lagomarsino LP
Zombie bugs? The fungus Purpureocillium cf. lilacinum may manipulate the behavior of its host bug Edessa rufomarginata, William Eberhard, Jessica Pacheco-Esquivel, Farah Carrasco-Rueda, Yuliana Christopher, Cely Gonzalez, Daniel Ramos, Hector Urbina, and Meredith Blackwell
High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS): Genome-wide DNA methylation analysis of IAP LTR retrotransposon, Muhammad B. Ekram and Joomyeong Kim
Warmer temperatures increase disease transmission and outbreak intensity in a host-pathogen system, Bret D. Elderd and James R. Reilly
Sexual differences of imprinted genes' expression levels, Mohammad Faisal, Hana Kim, and Joomyeong Kim
Historical and recent processes shaping the geographic range of a rocky intertidal gastropod: Phylogeography, ecology, and habitat availability, Phillip B. Fenberg, Karine Posbic, and Michael E. Hellberg
APeg3: Regulation of Peg3 through an evolutionarily conserved ncRNA, Wesley D. Frey and Joomyeong Kim
Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format, Yukichi Fujikawa, Takahiro Nakanishi, Hiroko Kawakami, Kanako Yamasaki, Masa H. Sato, Hiroyuki Tsuji, Makoto Matsuoka, and Naohiro Kato
St. John's Wort Has Metabolically Favorable Effects on Adipocytes In Vivo, Scott Fuller, Allison J. Richard, David M. Ribnicky, Robbie Beyl, Randall Mynatt, and Jacqueline M. Stephens
Genetic analysis and prevalence studies of the brp exopolysaccharide locus of Vibrio vulnificus, Katherine L. Garrison-Schilling, Zelam M. Kaluskar, Bliss Lambert, and Gregg S. Pettis
Gastrointestinal helminths in two species of geckos, gekko vittatus, gehyra oceanica, and five species of skinks, caledoniscincus atropunctatus, Emoia cyanogaster, Emoia erronan, Emoia nigra, Emoia sanfordi (Squamata) from the republic of Vanuatu, Oceania, Stephen R. Goldberg, Charles R. Bursey, Alison M. Hamilton, and Christopher C. Austin
Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact, F.C. Gowen, J.M. Maley, C. Cicero, A.T. Peterson, B.C. Faircloth, T.C. Warr, and J.E. McCormack
Nonrandom, diversifying processes are disproportionately strong in the smallest size classes of a tropical forest, Peter T. Green, Kyle E. Harms, and Joseph H. Connell
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs, R.E. Green, E.L. Braun, J. Armstrong, D. Earl, N. Nguyen, G. Hickey, M.W. Vandewege, J.A. St John, S. Capella-Gutiérrez, T.A. Castoe, et al.
Ligand-binding pocket bridges DNA-binding and dimerization domains of the urate-responsive marr homologue MftR from Burkholderia thailandensis, Ashish Gupta and Anne Grove
Anatomical and physiological studies of bigheaded carps demonstrate that the epibranchial organ functions as a pharyngeal taste organ, Anne Hansen, Ratna Ghosal, John Caprio, Aaron W. Claus, and Peter W. Sorensen
Do the BEAF insulator proteins regulate genes involved in cell polarity and neoplastic growth?, Craig M. Hart
Regulation and function of the peg3 imprinted domain, Hongzhi He and Joomyeong Kim
Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater), Sarah M. Hird, Bryan C. Carstens, Steven W. Cardiff, Donna L. Dittmann, and Robb T. Brumfield
Influence of season and method of topkill on resprouting characteristics and biomass of Quercus nigra saplings from a southeastern U.S. pine-grassland ecosystem, Tracy L. Hmielowski, Kevin M. Robertson, and William J. Platt
Exploring local adaptation and the ocean acidification seascape - Studies in the California Current Large Marine Ecosystem, G. E. Hofmann, T. G. Evans, M. W. Kelly, J. L. Padilla-Gamiño, C. A. Blanchette, L. Washburn, F. Chan, M. A. McManus, B. A. Menge, B. Gaylord, et al.
Syntaxin of plant proteins SYP123 and SYP132 mediate root hair tip growth in arabidopsis thaliana, Mie Ichikawa, Tomoko Hirano, Kazuhiko Enami, Taylor Fuselier, Naohiro Kato, Chian Kwon, Boris Voigt, Paul Schulze-Lefert, František Baluška, and Masa H. Sato
Inundicola Bravo, Isler, and Brumfield 2013 is a junior synonym of Akletos Dunajewski 1948 (Aves: Passeriformes: Thamnophilidae), Morton L. Isler, Gustavo A. Bravo, and Robb T. Brumfield
Systematics of the obligate ant-following clade of antbirds (Aves: Passeriformes: Thamnophilidae), Morton L. Isler, Gustavo A. Bravo, and Robb T. Brumfield
Herpes simplex virus 1 protein UL37 interacts with viral glycoprotein gK and membrane protein UL20 and functions in cytoplasmic virion envelopment, Nithya Jambunathan, Dmitry Chouljenko, Prashant Desai, Anu-Susan Charles, Ramesh Subramanian, Vladimir N. Chouljenko, and Konstantin G. Kousoulas
Whole-genome analyses resolve early branches in the tree of life of modern birds, Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y.W. Ho, Brant C. Faircloth, Benoit Nabholz, Jason T. Howard, et al.
Trends in access of plant biodiversity data revealed by Google Analytics, Timothy Mark Jones, David G. Baxter, Gregor Hagedorn, Ben Legler, Edward Gilbert, Kevin Thiele, Yalma Vargas-Rodriguez, and Lowell E. Urbatsch
Ectopic expression of ADP ribosylation factor 1 (SaARF1) from smooth cordgrass (Spartina alterniflora Loisel) confers drought and salt tolerance in transgenic rice and Arabidopsis, R. Joshi, M.V. Ramanarao, S. Lee, N. Kato, and N. Baisakh
The carbon concentrating mechanism in Chlamydomonas reinhardtii: Finding the missing pieces, Nadine Jungnick, Yunbing Ma, Bratati Mukherjee, Julie C. Cronan, Dequantarius J. Speed, Susan M. Laborde, David J. Longstreth, and James V. Moroney
Functional hierarchy of herpes simplex virus type-1 membrane proteins in corneal infection and virus transmission to ganglionic neurons, In-Joong Kim, Ahmad A. Saied, Vladimir N. Chouljenko, Ramesh Subramanian, and Konstantin G. Kousoulas
Chemicals Facilitating Reprogramming: Targeting the SAM Binding Site to Identify Novel Methyltransferase Inhibitors, Jeong Do Kim, Jong S. Rim, Robert B. Crochet, Yong Hwan Lee, Jaroslaw Staszkiewicz, Ru Gao, and Kenneth J. Eilertsen
Erratum: Peg3 mutational effects on reproduction and placenta-specific gene families (PLoS ONE (2014) 9:1 DOI: 10.1371/annotation/8de03ec5-e62c-4135-87ee- 4928475090a8), Joomyeong Kim, Wesley D. Frey, Hongzhi He, Hana Kim, Muhammad B. Ekram, Arundhati Bakshi, Mohammad Faisal, Bambarendage P.U. Perera, An Ye, and Ryoichi Teruyama
Thermomicrobium carboxidum sp. nov., and Thermorudis peleae gen. nov., sp. nov., carbon monoxide-oxidizing bacteria isolated from geothermally heated biofilms, C. E. King and G. M. King
Urban microbiomes and urban ecology: How do microbes in the built environment affect human sustainability in cities?, Gary M. King
The structure of human 15-lipoxygenase-2 with a substrate mimic, Matthew J. Kobe, David B. Neau, Caitlin E. Mitchell, Sue G. Bartlett, and Marcia E. Newcomer
Intergenic transcriptional interference is blocked by RNA polymerase III transcription factor TFIIIB in Saccharomyces cerevisiae, Asawari Korde, Jessica M. Rosselot, and David Donze
Advances in GPCR modeling evaluated by the GPCR Dock 2013 assessment: Meeting new challenges, Irina Kufareva, Vsevolod Katritch, Phil Biggin, Minsup Kim, Kichul Park, Sang Won Jung, Art E. Cho, Zara A. Sands, Liliana Ostopovici-Halip, Cristian G. Bologa, et al.
Members of the conserved DedA family are likely membrane transporters and are required for drug resistance in Escherichia coli, Sujeet Kumar and William T. Doerrler
Contributions of adipose tissue architectural and tensile properties toward defining healthy and unhealthy obesity, Denise E. Lackey, David H. Burk, Mohamed R. Ali, Rouzbeh Mostaedi, William H. Smith, Jiyoung Park, Philipp E. Scherer, Shundra A. Seay, Colin S. McCoin, Paolo Bonaldo, et al.
Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae), Laura P. Lagomarsino, Alexandre Antonelli, Nathan Muchhala, Allan Timmermann, Sarah Mathews, and Charles C. Davis
Redox control of human mitochondrial outer membrane protein mitoneet [2FE-2S] clusters by biological thiols and hydrogen peroxide, Aaron P. Landry and Huangen Ding
The N-Terminal Domain of Human DNA Helicase Rtel1 Contains a Redox Active Iron-Sulfur Cluster, Aaron P. Landry and Huangen Ding
Chronic exposure to a low dose of ingested petroleum disrupts corticosterone receptor signalling in a tissue-specific manner in the house sparrow (Passer domesticus), Christine R. Lattin and L. Michael Romero
Chronic stress alters concentrations of corticosterone receptors in a tissue-specific manner in wild house sparrows (Passer domesticus), Christine R. Lattin and L. Michael Romero
Evaluating the stress response as a bioindicator of sub- lethal effects of crude oil exposure in wild house sparrows (Passer domesticus), C.R. Lattin, H.M. Ngai, and L.M. Romero
Exposure to combustion generated environmentally persistent free radicals enhances severity of influenza virus infection, Greg I. Lee, Jordy Saravia, Dahui You, Bishwas Shrestha, Sridhar Jaligama, Valerie Y. Hebert, Tammy R. Dugas, and Stephania A. Cormier
Optimized inhibitors of soluble epoxide hydrolase improve in vitro target residence time and in vivo efficacy, Kin Sing Stephen Lee, Jun Yan Liu, Karen M. Wagner, Svetlana Pakhomova, Hua Dong, Christophe Morisseau, Samuel H. Fu, Jun Yang, Peng Wang, Arzu Ulu, et al.
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns, Fay Wei Li, Juan Carlos Villarreal, Steven Kelly, Carl J. Rothfels, Michael Melkonian, Eftychios Frangedakis, Markus Ruhsam, Erin M. Sigel, Joshua P. Der, Jarmila Pittermann, et al.
The stability of Taq DNA polymerase results from a reduced entropic folding penalty; identification of other thermophilic proteins with similar folding thermodynamics, Chin Chi Liu and Vince J. LiCata
Insights into how Spt5 functions in transcription elongation and repressing transcription coupled DNA repair, Wentao Li, Cristina Giles, and Shisheng Li
Transcription bypass of DNA lesions enhances cell survival but attenuates transcription coupled DNA repair, Wentao Li, Kathiresan Selvam, Tengyu Ko, and Shisheng Li
Combustion by-products and their health effects - Combustion engineering and global health in the 21st century: Issues and challenges, Slawo Lomnicki, Brian Gullett, Tobias Stöger, Ian Kennedy, Jim Diaz, Tammy R. Dugas, Kurt Varner, Danielle J. Carlin, Barry Dellinger, and Stephania A. Cormier
Social status differences regulate the serotonergic system of a cichlid fish, Astatotilapia burtoni, Jasmine L. Loveland, Natalie Uy, Karen P. Maruska, Russ E. Carpenter, and Russell D. Fernald
Crystal structure of the histone lysine specific demethylase LSD1 complexed with tetrahydrofolate, Zigmund Luka, Svetlana Pakhomova, Lioudmila V. Loukachevitch, M. Wade Calcutt, Marcia E. Newcomer, and Conrad Wagner
Folate in demethylation: The crystal structure of the rat dimethylglycine dehydrogenase complexed with tetrahydrofolate, Zigmund Luka, Svetlana Pakhomova, Lioudmila V. Loukachevitch, Marcia E. Newcomer, and Conrad Wagner
A multi-iron system capable of rapid N2 formation and N 2 cleavage, K. Cory MacLeod, David J. Vinyard, and Patrick L. Holland
New taxa and taxonomic revisions to the Poraniidae (Valvatacea; Asteroidea) with comments on feeding biology, Christopher L. Mah and David W. Foltz
Social regulation of reproduction in male cichlid fishes, Karen P. Maruska
Elaborate visual and acoustic signals evolve independently in a large, phenotypically diverse radiation of songbirds, Nicholas A. Mason, Allison J. Shultz, and Kevin J. Burns
Genetic variation among western populations of the Horned Lark (Eremophila alpestris) indicates recent colonization of the Channel Islands off southern California, mainland-bound dispersal, and postglacial range shifts, Nicholas A. Mason, Pascal O. Title, Carla Cicero, Kevin J. Burns, and Rauri C.K. Bowie
Data access for the 1,000 Plants (1KP) project, Naim Matasci, Ling Hong Hung, Zhixiang Yan, Eric J. Carpenter, Norman J. Wickett, Siavash Mirarab, Nam Nguyen, Tandy Warnow, Saravanaraj Ayyampalayam, Michael Barker, et al.
Algae hold clues to eukaryotic origins of plant phytochromes, Sarah Mathews
A new species of Eimeria Schneider, 1875 (Apicomplexa: Eimeriidae) from the Solomon ground skink, Sphenomorphus solomonis (Boulenger) (Sauria: Scincidae) from Papua New Guinea, Chris T. McAllister, Donald W. Duszynski, Robert N. Fisher, and Christopher C. Austin
Four new species of coccidia (Apicomplexa: Eimeriidae) from Owen Stanley skinks, papuascincus stanleyanus (Sauria: Scincidae), from Papua New Guinea, Chris T. McAllister, Donald W. Duszynski, Robert N. Fisher, and Christopher C. Austin
Two new species of Eimeria (Apicomplexa, Eimeriidae) from tree skinks, Prasinohaema spp. (Sauria: Scincidae), from Papua New Guinea, Chris T. McAllister, Donald W. Duszynski, Robert N. Fisher, and Christopher C. Austin
Taxonomic status of the lago coatepeque endemic convict cichlid amatitlania coatepeque (Teleostei: Cichlidae), Caleb D. McMahan, Wilfredo A. Matamoros, Enrique Barraza, Justin Kutz, and Prosanta Chakrabarty
Incongruence among different mitochondrial regions: A case study using complete mitogenomes, K.A. Meiklejohn, M.J. Danielson, B.C. Faircloth, T.C. Glenn, E.L. Braun, and R.T. Kimball
Carbon allocation and element composition in four Chlamydomonas mutants defective in genes related to the CO2 concentrating mechanism, Francesco Memmola, Bratati Mukherjee, James V. Moroney, and Mario Giordano
CCM8: The Eighth International Symposium on Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms, James V. Moroney and James L. Wee
Use of Protein cross-linking and radiolytic footprinting to elucidate PsbP and PsbQ interactions within higher plant Photosystem II, Manjula P. Mummadisetti, Laurie K. Frankel, Henry D. Bellamy, Larry Sallans, Jost S. Goettert, Michal Brylinski, Patrick A. Limbach, and Terry M. Bricker
Use of Protein cross-linking and radiolytic footprinting to elucidate PsbP and PsbQ interactions within higher plant Photosystem II, Manjula P. Mummadisetti, Laurie K. Frankel, Henry D. Bellamy, Larry Sallans, Jost S. Goettert, Michal Brylinski, Patrick A. Limbach, and Terry M. Bricker
Crystal structure of a lipoxygenase in complex with substrate: The arachidonic acid-binding site of 8R-lipoxygenase, David B. Neau, Gunes Bender, William E. Boeglin, Sue G. Bartlett, Alan R. Brash, and Marcia E. Newcomer
Genomics of plant abiotic stress tolerance, Dong Ha Oh, Maheshi Dassanayake, Hyewon Hong, Suja George, Seol Ki Paeng, Anna Kropornika, Ray A. Bressan, Sang Yeol Lee, Dae Jin Yun, and Hans J. Bohnert
Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula, Dong Ha Oh, Hyewon Hong, Sang Yeol Lee, Dae Jin Yun, Hans J. Bohnert, and Maheshi Dassanayake
Parental care in the Cuatro Ciénegas cichlid, Herichthys minckleyi (Teleostei: Cichlidae), Ronald G. Oldfield, Kapil Mandrekar, M. Xavier Nieves, Dean A. Hendrickson, Prosanta Chakrabarty, Brook O. Swanson, and Hans A. Hofmann
Synthesis, spectroscopic, and cellular properties of α-pegylated -AB- and AB-types ZnPcs, Benson G. Ongarora, Zehua Zhou, Elizabeth A. Okoth, Igor Kolesnichenko, Kevin M. Smith, and M Graça Vicente
Biogeochemical consequences of an oxygenated intrusion into an anoxic fjord, Svetlana Pakhomova, Hans Fredrik V. Braaten, Evgeniy Yakushev, and Jens Skei
Interannual variability of the Black Sea Proper oxygen and nutrients regime: The role of climatic and anthropogenic forcing, S. Pakhomova, E. Vinogradova, E. Yakushev, A. Zatsepin, G. Shtereva, V. Chasovnikov, and O. Podymov
Diet-induced fatty acid variation in critical tissues of a spawning estuarine fish and consequences for larval fitness, Joshua T. Patterson and Christopher C. Green
Dual roles of an algal farming damselfish as a cultivator and opportunistic browser of an invasive seaweed, Kimberly A. Peyton, Lauren M. Valentino, and Karen P. Maruska
Comparison of infrapatellar and subcutaneous adipose tissue stromal vascular fraction and stromal/stem cells in osteoarthritic subjects, Pedro Pires de Carvalho, Katie M. Hamel, Robert Duarte, Andrew G.S. King, Masudul Haque, Marilyn A. Dietrich, Xiying Wu, Forum Shah, David Burk, Rui L. Reis, et al.
Strong natural selection on juveniles maintains a narrow adult hybrid zone in a broadcast spawner, Carlos Prada and Michael E. Hellberg
Cryptic diversity hides host and habitat specialization in a gorgonian-algal symbiosis, Carlos Prada, Shelby E. McIlroy, Diana M. Beltrán, Daniel J. Valint, Scott A. Ford, Michael E. Hellberg, and Mary Alice Coffroth
Genetic species delineation among branching Caribbean Porites corals, C. Prada, M. B. De Biasse, J. E. Neigel, B. Yednock, J. L. Stake, Z. H. Forsman, I. B. Baums, and M. E. Hellberg
Development and characterization of microsatellite loci for two species of Beringian birds, rock sandpiper (Calidris ptilocnemis) and Pacific wren (Troglodytes pacificus), C.L. Pruett, C. Whelan, A. Ricono, S.L. Lance, T. Glenn, B. Faircloth, and K. Winker
Cdk1 promotes cytokinesis in fission yeast through activation of the septation initiation network, Nicole Rachfall, Alyssa E. Johnson, Sapna Mehta, Jun Song Chen, and Kathleen L. Gould
Developing eThread pipeline using SAGA-pilot abstraction for large-scale structural bioinformatics, Anjani Ragothaman, Sairam Chowdary Boddu, Nayong Kim, Wei Feinstein, Michal Brylinski, Shantenu Jha, and Joohyun Kim
Interactive effects of male and female age on extra-pair paternity in a socially monogamous seabird, A.G. Ramos, S.O. Nunziata, S.L. Lance, C. Rodriguez, B.C. Faircloth, P.A. Gowaty, and H. Drummond
Habitat structure and colony structure constrain extrapair paternity ina colonial bird, A.G. Ramos, S.O. Nunziata, S.L. Lance, C. Rodríguez, B.C. Faircloth, P.A. Gowaty, and H. Drummond
Poor fit to the multispecies coalescent is widely detectable in empirical data, Noah M. Reid, Sarah M. Hird, Jeremy M. Brown, Tara A. Pelletier, John D. McVay, Jordan D. Satler, and Bryan C. Carstens
Effects of biological control on long-term population dynamics: Identifying unexpected outcomes, James R. Reilly and Bret D. Elderd
Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks, M. Réjou-Méchain, H. C. Muller-Landau, M. Detto, S. C. Thomas, T. Le Toan, S. S. Saatchi, J. S. Barreto-Silva, N. A. Bourg, S. Bunyavejchewin, N. Butt, et al.
Artemisia extracts activate PPARγ, promote adipogenesis, and enhance insulin sensitivity in adipose tissue of obese mice, Allison J. Richard, Thomas P. Burris, David Sanchez-Infantes, Yongjun Wang, David M. Ribnicky, and Jacqueline M. Stephens
Artemisia scoparia enhances adipocyte development and endocrine function in vitro and enhances insulin action in vivo, Allison J. Richard, Scott Fuller, Veaceslav Fedorcenco, Robbie Beyl, Thomas P. Burris, Randall Mynatt, David M. Ribnicky, and Jacqueline M. Stephens
The role of JAK-STAT signaling in adipose tissue function, Allison J. Richard and Jacqueline M. Stephens
Specimen collection: An essential tool, L. A. Rocha, A. Aleixo, G. Allen, F. Almeda, C. C. Baldwin, M. V.L. Barclay, J. M. Bates, A. M. Bauer, F. Benzoni, C. M. Berns, et al.