Submissions from 2022
Dynamic modeling of ABA-dependent expression of the Arabidopsis RD29A gene, Ruth Ndathe, Renee Dale, and Naohiro Kato
Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed), Dong‐Ha Oh, Kurt P. Kowalski, Quynh N. Quach, Chathura Wijesinghege, Philippa Tanford, Maheshi Dassanayake, and Keith Clay
Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed), Dong‐Ha Oh, Kurt P. Kowalski, Quynh N. Quach, Chathura Wijesinghege, Philippa Tanford, Maheshi Dassanayake, and Keith Clay
Role of Nischarin in the pathology of diseases: a special emphasis on breast cancer, Samuel C. Okpechi, Hassan Yousefi, Khoa Nguyen, Thomas Cheng, Nikhilesh V. Alahari, Bridgette Collins-Burow, Matthew E. Burow, and Suresh K. Alahari
Exploring The Effects Of Genetic Variation On Gene Regulation In Cancer In The Context Of 3D Genome Structure, N Osman, A M. Shawky, and M Brylinski
Living with high potassium: balance between nutrient acquisition and K-induced salt stress signaling, Pramod Pantha, Dong-Ha Oh, David Longstreth, and Maheshi Dassanayake
Investigating physical and mechanical properties of nest soils used by mud dauber wasps from a geotechnical engineering perspective, Joon S. Park, Noura S. Saleh, Hai Lin, Hussein Alqrinawi, and Nathan P. Lord
Prolonged effects of DPP-4 inhibitors on steato-hepatitic changes in Sprague-Dawley rats fed a high-cholesterol diet, Rashmi Pathak, Avinash Kumar, Henry A. Palfrey, Kirsten P. Stone, Narayan R. Raju, Thomas W. Gettys, and Subramanyam N. Murthy
Bridging the Research Gap between Live Collections in Zoos and Preserved Collections in Natural History Museums, Sinlan Poo, Steven M. Whitfield, Alexander Shepack, Gregory J. Watkins-Colwell, Gil Nelson, Jillian Goodwin, Allison Bogisich, Patricia L.R. Brennan, Jennifer D'agostino, Michelle S. Koo, et al.
An Integrated Network Representation Of Multiple Cancer-Specific Data For Graph-Based Machine Learning, L M. Pu, M Singha, H C. Wu, C Busch, L M. Pu, and M Brylinski
Evaluation of Photosynthetic Efficiency in Photorespiratory Mutants by Chlorophyll Fluorescence Analysis, Joseph Qian, Nicholas Ferrari, Richard Garcia, Mary Beth Rollins, and Paul F. South
Oxidative stress and detoxification mechanisms of earthworms (Eisenia fetida) after exposure to flupyradifurone in a soil-earthworm system, Zhihua Qiao, Peiyao Li, Jiaqi Tan, Cheng Peng, Fengwen Zhang, Wei Zhang, and Xingyin Jiang
A Rapid Method for Detecting Normal or Modified Plant and Algal Carbonic Anhydrase Activity Using, Ashwani K. Rai, Robert J. DiMario, Remmy W. Kasili, Michael Groszmann, Asaph B. Cousins, David Donze, and James V. Moroney
A set of principles and practical suggestions for equitable fieldwork in biology, Valeria Ramírez-Castañeda, Erin P. Westeen, Jeffrey Frederick, Sina Amini, Daniel R. Wait, Anang S. Achmadi, Noviar Andayani, and Evy Arida
Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in Caenorhabditis elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson
Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in C. elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson
New fac-[ReI(CO)3(Ltri)]Y complexes of linear N,N′,N′′-tridentate ligands (Ltri) with terminal imidazolyl or pyridyl ring (N and N′′) and central tertiary sulfonamide (N′) N-donors. Effects of size and substituents of the terminal N-donor rings and the rarely found direct sulfonamide N to metal bond, Kokila Ranasinghe, Patricia A. Marzilli, Svetlana Pakhomova, and Luigi G. Marzilli
A draft of the genome of the Gulf Coast tick, Amblyomma maculatum, Jose M. Ribeiro, Natalia J. Bayona-Vásquez, Khemraj Budachetri, Deepak Kumar, Julia Catherine Frederick, Faizan Tahir, Brant C. Faircloth, and Travis C. Glenn
Loss of Adipocyte STAT5 Confers Increased Depot-Specific Adiposity in Male and Female Mice That Is Not Associated With Altered Adipose Tissue Lipolysis, Allison J. Richard, Hardy Hang, Timothy D. Allerton, Peng Zhao, Tamra Mendoza, Sujoy Ghosh, Carrie M. Elks, and Jacqueline M. Stephens
A Community-Integrated Geographic Information System Study of Air Pollution Exposure Impacts in Colfax, LA, Jennifer Richmond-Bryant, Matilda Odera, Wilma Subra, Brenda Vallee, Chloe Tucker, Christopher Oliver, Alyanna Wilson, and Jessica Tran
An Attenuated HSV-1-Derived Malaria Vaccine Expressing Liver-Stage Exported Proteins Induces Sterilizing Protection against Infectious Sporozoite Challenge, Paul J. Rider, Mohd Kamil, Ilknur Yilmaz, Habibe N. Atmaca, Merve Kalkan-Yazici, Mehmet Ziya Doymaz, Konstantin G. Kousoulas, and Ahmed S. Aly
A new species of New Guinea Worm-Eating Snake (Serpentes, Elapidae, Toxicocalamus Boulenger, 1896) from Western Highlands Province, Papua New Guinea, Jackson R. Roberts, Bulisa Iova, and Christopher C. Austin
Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason
Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason
Linking inflammatory adipose tissue to placental abnormalities in obese preeclamptic pregnancies, Brianna N. Rogers, Jacqueline M. Stephens, and Jenny L. Sones
The role of bariatric and metabolic surgery in the development, diagnosis, and treatment of endometrial cancer, Robert C. Ross, Yetunde M. Akinde, Philip R. Schauer, Carel W. le Roux, Donal Brennan, Amelia M. Jernigan, Marco Bueter, and Vance L. Albaugh
Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard
Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard
Light-induced shifts in opsin gene expression in the four-eyed fish, Daniele Salgado, Bertha R. Mariluz, Maysa Araujo, Jamily Lorena, Louise N. Perez, Rafaela de Ribeiro, Josane de Sousa, and Patricia N. Schneider
New Species of Virola (Myristicaceae) from South America, Daniel Santamaría-Aguilar and Laura P. Lagomarsino
Global urban environmental change drives adaptation in white clover, James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, and Samreen Munim
Contrasts among cationic phytochemical landscapes in the southern United States, Luis Y. Santiago-Rosario, Kyle E. Harms, and Dylan Craven
Greater evolutionary divergence of thermal limits within marine than terrestrial species, Matthew Sasaki, Jordanna M. Barley, Sarah Gignoux-Wolfsohn, Cynthia G. Hays, Morgan W. Kelly, Alysha B. Putnam, Seema N. Sheth, Andrew R. Villeneuve, and Brian S. Cheng
Neo-sex chromosome evolution and phenotypic differentiation across an elevational gradient in horned larks (Eremophila alpestris), Subir B. Shakya, Cynthia Y. Wang-Claypool, Carla Cicero, Rauri C. K. Bowie, and Nicholas A. Mason
Solid-Support Directional (SSD) RNA-Seq as a Companion Method to CLIP-Seq, Abd-El Monsif Shawky, Mahmoud Dondeti, Zissimos Mourelatos, and Anastasios Vourekas
Pocket2Drug: An Encoder-Decoder Deep Neural Network For The Target-Based Drug Design, W T. Shi, M Singha, G Srivastava, L M. Pu, W T. Shi, and M Brylinski
Artificial intelligence to guide precision anticancer therapy with multitargeted kinase inhibitors, Manali Singha, Limeng Pu, Brent A. Stanfield, Ifeanyi K. Uche, Paul J. Rider, Konstantin G. Kousoulas, J Ramanujam, and Michal Brylinski
TFIIIC-based chromatin insulators through eukaryotic evolution, Rebecca E. Sizer, Nisreen Chahid, Sienna P. Butterfield, David Donze, Nia J. Bryant, and Robert J. White
The β integrin EGF domains support a constitutive extended conformation, and the cytoplasmic domain impairs outside-in signaling, Guannan Song, Fei Meng, and Bing-Hao Luo
MILYERINGIDAE: TYPHLEOTRIS, MALAGASY CAVEFISH, TOHO, John S. Sparks, Prosanta Chakrabarty, and Melanie L.J. Stiassny
Lifestyle interventions in pregnancy targeting GDM prevention: looking ahead to precision medicine, Joshua R. Sparks, Nidhi Ghildayal, Marie-France Hivert, and Leanne M. Redman
Impact of COVID-19 Stay-at-Home Orders on Health Behaviors and Anxiety in Black and White Americans, Joshua R. Sparks, Maryam Kebbe, Emily W. Flanagan, Robbie A. Beyl, Abby D. Altazan, Shengping Yang, and Leanne M. Redman
Cross protective efficacy of the Non-Neurotropic live attenuated herpes simplex virus type 1 vaccine VC-2 is enhanced by intradermal vaccination and deletion of glycoprotein G, Brent A. Stanfield, Fernando J. Bravo, David A. Dixon, Vladimir N. Chouljenko, Konstantin G. Kousoulas, and David I. Bernstein
Cebidae Element Alignments and a Complex Non-Human Primate Radiation, Jessica M. Storer, Jerilyn A. Walker, Morgan A. Brown, and Mark A. Batzer
Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer
Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer
Recently Integrated Alu Elements In Capuchin Monkeys: A Resource For Cebus/Sapajus Genomics, J M. Storer, J A. Walker, C E. Rockwell, G Mores, J M. Storer, J D. Orkin, A D. Melin, K A. Phillips, C Roos, and M A. Batzer
Divergence in the ABA gene regulatory network underlies differential growth control, Ying Sun, Dong-Ha Oh, Lina Duan, Prashanth Ramachandran, Andrea Ramirez, Anna Bartlett, Kieu-Nga Tran, Guannan Wang, Maheshi Dassanayake, and José R. Dinneny
The dual nature of the nucleolus, Alan Tartakoff, Patrick DiMario, Eduard Hurt, Brian McStay, Vikram Govind Panse, and David Tollervey
Electron transfer activity of the nanodisc-bound mitochondrial outer membrane protein mitoNEET, Homyra Tasnim and Huangen Ding
The Global Regulator MftR Controls Virulence and Siderophore Production in Burkholderia thailandensis, Sudarshan S. Thapa, Ahmed Al-Tohamy, and Anne Grove
On the Need for New Measures of Phylogenomic Support, Robert C. Thomson and Jeremy M. Brown
Utility of a Recombinant HSV-1 Vaccine Vector for Personalized Cancer Vaccines, Ifeanyi Kingsley Uche, Brent A. Stanfield, Jared S. Rudd, Konstantin G. Kousoulas, and Paul J. Rider
Elucidating the Colletotrichum spp. diversity responsible for papaya anthracnose in Brazil, Willie Anderson Vieira, Josiene Silva Veloso, Anthony Carlos Silva, Angélica Dos Nunes, Vinson P. Doyle, Lisa A. Castlebury, and Marcos Paz Câmara
Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker
Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker
Multifunctional role of GPCR signaling in epithelial tube formation, Vishakha Vishwakarma, Thao Phuong Le, and SeYeon Chung
IL-1 beta Promotes Expansion of IL-33(+) Lung Epithelial Stem Cells after Respiratory Syncytial Virus Infection during Infancy, Luan D. Vu, Anh T. Q. Phan, Diego R. Hijano, David T. Siefker, Heather Tillman, and Stephania A. Cormier
Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry
Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry
Functional trait data for vascular plant species from northeastern North America, Donald M. Waller, Alison K. Paulson, Jeannine H. Richards, William S. Alverson, Kathryn L. Amatangelo, Chengke Bai, Sarah E. Johnson, Daijiang Li, Grégory Sonnier, and Rachel H. Toczydlowski
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
The Spraguea Parasitism in Anglerfishes of the Genus Lophius, Earl Weidner
Microsporidia Have a Peculiar Outer Membrane with Exterior Cytoplasmic Proteins, Earl Weidner and Robin Overstreet
Short-Term Exposure to Thermophilic Temperatures Facilitates CO Uptake by Thermophiles Maintained under Predominantly Mesophilic Conditions, Caitlin K. Wilson and Gary M. King
Phylogenomic analysis of the bowfin (Amia calva) reveals unrecognized species diversity in a living fossil lineage, Jeremy J. Wright, Spencer A. Bruce, Daniel A. Sinopoli, Jay R. Palumbo, and Donald J. Stewart
Multiple Domains of Staphylococcal Superantigen-like Protein 11 (SSL11) Contribute to Neutrophil Inhibition, Chen Yang, Joseph T. Barbieri, Nancy M. Dahms, and Chen Chen
Notch signaling pathway: a comprehensive prognostic and gene expression profile analysis in breast cancer, Hassan Yousefi, Afshin Bahramy, Narges Zafari, Mahsa Rostamian Delavar, Khoa Nguyen, Atousa Haghi, Tahmineh Kandelouei, and Cecilia Vittori
Hippo signaling pathway: A comprehensive gene expression profile analysis in breast cancer, Hassan Yousefi, Mahsa Rostamian Delavar, Fatemeh Piroozian, Masoud Baghi, Khoa Nguyen, Thomas Cheng, Cecilia Vittori, and David Worthylake
Meta-analysis of salt marsh vegetation impacts and recovery: a synthesis following the Deepwater Horizon oil spill, Scott Zengel, Jennifer Weaver, Irving A. Mendelssohn, Sean A. Graham, Qianxin Lin, Mark W. Hester, Jonathan M. Willis, and Brian R. Silliman
Automated landmarking via multiple templates, Chi Zhang, Arthur Porto, Sara Rolfe, Altan Kocatulum, and A Murat Maga
Exploring Conflicts in Whole Genome Phylogenetics: A Case Study within Manakins (Aves: Pipridae), Min Zhao, Sarah M. Kurtis, Noor D. White, Andre E. Moncrieff, Rafael N. Leite, Robb T. Brumfield, Edward L. Braun, and Rebecca T. Kimball
Impacts of global change on the phyllosphere microbiome, Yong-Guan Zhu, Chao Xiong, Zhong Wei, Qing-Lin Chen, Bin Ma, Shu-Yi-Dan Zhou, Jiaqi Tan, and Li-Mei Zhang
Submissions from 2021
Prospects for beyond the Standard Model physics searches at the Deep Underground Neutrino Experiment: DUNE Collaboration, B Abi, R Acciarri, M A. Acero, G Adamov, D Adams, M Adinolfi, Z Ahmad, and J Ahmed
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree, Fernando Alda, William B. Ludt, Diego J. Elías, Caleb D. McMahan, and Prosanta Chakrabarty
An Ethanolic Extract of Artemisia dracunculus L. Enhances the Metabolic Benefits of Exercise in Diet-induced Obese Mice, Timothy D. Allerton, Greg M. Kowalski, James Stampley, Brian A. Irving, John R. Lighton, Z Elizabeth Floyd, and Jacqueline M. Stephens
Exercise reduced the formation of new adipocytes in the adipose tissue of mice in vivo, Timothy D. Allerton, Jonathan J. Savoie, Mark D. Fitch, Marc K. Hellerstein, Jacqueline M. Stephens, and Ursula White
Transgenic expression of late embryogenesis abundant proteins improves tolerance to water stress in, John M. Anderson and Steven C. Hand
Limited plasticity in thermally tolerant ectotherm populations: evidence for a trade-off, Jordanna M. Barley, Brian S. Cheng, Matthew Sasaki, Sarah Gignoux-Wolfsohn, Cynthia G. Hays, Alysha B. Putnam, Seema Sheth, Andrew R. Villeneuve, and Morgan Kelly
Climate drivers of adult insect activity are conditioned by life history traits, Michael W. Belitz, Vijay Barve, Joshua R. Doby, Maggie M. Hantak, Elise A. Larsen, Daijiang Li, Jessica A. Oswald, Neeka Sewnath, Mitchell Walters, Narayani Barve, et al.
Gut-brain communication and obesity: understanding functions of the vagus nerve, Hans-Rudolf Berthoud, Vance L. Albaugh, and Winfried L. Neuhuber
Optimized Methodology for Reference Region and Image-Derived Input Function Kinetic Modeling in Preclinical PET, Jason Bini, Christine R. Lattin, Takuya Toyonaga, Sjoerd J. Finnema, and Richard E. Carson
A Morphological and Histological Investigation of Imperfect Lungfish Fin Regeneration, Vivien Bothe, Igor Schneider, and Nadia B. Fröbisch
and Metabolic Health: Untapped Potential of an Ancient Remedy for Modern Use, Anik Boudreau, Allison J. Richard, Innocence Harvey, and Jacqueline M. Stephens
Phylogenomic Analyses Reveal Non-Monophyly Of The Antbird Genera Herpsilochmus And Sakesphorus (Thamnophilidae), With Description Of A New Genus For Herpsilochmus Sellowi, G A. Bravo, B M. Whitney, R Belmonte-Lopes, M R. Bornschein, G A. Bravo, R Beco, J Battilana, L N. Naka, A Aleixo, M R. Pie, et al.
Analyzing a phenological anomaly in Yucca of the southwestern United States, Laura Brenskelle, Vijay Barve, Lucas C. Majure, Rob P. Guralnick, and Daijiang Li
A Role for Adipocytes and Adipose Stem Cells in the Breast Tumor Microenvironment and Regenerative Medicine, Courtney K. Brock, Katherine L. Hebert, Maria Artiles, Maryl K. Wright, Thomas Cheng, Gabrielle O. Windsor, Khoa Nguyen, and Madlin S. Alzoubi
Multiple Species And Deep Genomic Divergences Despite Little Phenotypic Differentiation In An Ancient Neotropical Songbird, Tunchiornis Ochraceiceps (Sclater, 1860) (Aves: Vireonidae), N Buainain, M F. Maximiano, M Ferreira, A Aleixo, N Buainain, R T. Brumfield, J Cracraft, and C C. Ribas
The critical importance of vouchers in genomics, Janet C. Buckner, Robert C. Sanders, Brant C. Faircloth, and Prosanta Chakrabarty
The critical importance of vouchers in genomics, Janet C. Buckner, Robert C. Sanders, Brant C. Faircloth, and Prosanta Chakrabarty
Genome assemblies for two Neotropical trees: Jacaranda copaia and Handroanthus guayacan, John T. Burley, James R. Kellner, Stephen P. Hubbell, Brant C. Faircloth, and R K. Dawe
KAT8, lysine acetyltransferase 8, is required for adipocyte differentiation in vitro, Jasmine A. Burrell and Jacqueline M. Stephens
Noise during mouthbrooding impairs maternal care behaviors and juvenile development and alters brain transcriptomes in the African cichlid fish Astatotilapia burtoni, Julie M. Butler and Karen P. Maruska
Opsin Expression Varies with Reproductive State in the Cichlid Fish Astatotilapia burtoni, Julie M. Butler and Karen P. Maruska
Organelle-Specific Autophagy in Cellular Aging and Rejuvenation, Tyler J. Butsch, Bhaswati Ghosh, and K Adam Bohnert
Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae), Liming Cai, Brian J. Arnold, Zhenxiang Xi, Danielle E. Khost, Niki Patel, Claire B. Hartmann, Sugumaran Manickam, and Sawitree Sasirat
Conservation status of the world's skinks (Scincidae): Taxonomic and geographic patterns in extinction risk, David G. Chapple, Uri Roll, Monika Böhm, Rocío Aguilar, Andrew P. Amey, Chris C. Austin, Marleen Baling, Anthony J. Barley, Michael F. Bates, Aaron M. Bauer, et al.