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Submissions from 2024

Identifying the proximal cue(s) for pupal color variation in the bordered patch butterfly, Chlosyne lacinia (Lepidoptera: Nymphalidae), Jamie M. Phelps, Luis Y. Santiago-Rosario, and Morgan W. Kelly

Subspecies-level distribution maps for birds of the Amazon basin and adjacent areas, Marco Antonio Rego, Glaucia Del-Rio, and Robb T. Brumfield

Whole snake genomes from eighteen families of snakes (Serpentes: Caenophidia) and their applications to systematics, Jackson R. Roberts, Justin M. Bernstein, Christopher C. Austin, Taylor Hains, Joshua Mata, Michael Kieras, Stacy Pirro, and Sara Ruane

Systematics and biogeography of a Sunda-Papuan snake lineage (Natricidae: Tropidonophis Jan 1863), Jackson R. Roberts, Fred Kraus, Allen Allison, Stephen J. Richards, Bulisa Iova, Burhan Tjaturadi, Sara Ruane, and Christopher C. Austin

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Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements, Sheila Rodríguez-Machado, Diego J. Elías, Caleb D. McMahan, Anna Gruszkiewicz-Tolli, Kyle R. Piller, and Prosanta Chakrabarty

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Erratum to "Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements" [Mol. Phylogenet. Evol. 190 (2024) 107965, Sheila Rodríguez-Machado, Diego J. Elías, Caleb D. McMahan, Anna Gruszkiewicz-Tolli, Kyle R. Piller, and Prosanta Chakrabarty

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Editorial: Structure and function of trans-membrane proteins, Irena Roterman, Michal Brylinski, Fabio Polticelli, and Alexandre G. de Brevern

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Conformational changes in a Photosystem II hydrogen bond network stabilize the oxygen-evolving complex, Brandon P. Russell and David J. Vinyard

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An island ‘endemic’ born out of hybridization between introduced lineages, Jessie F. Salter, Robb T. Brumfield, and Brant C. Faircloth

Continental-scale interactions of Australian showy mistletoes and their hosts, Luis Y. Santiago-Rosario, Jordan Book, and Sarah Mathews

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The genomes of all lungfish inform on genome expansion and tetrapod evolution, Manfred Schartl, Joost M. Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, et al.

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In the Spotlight—Early career researcher, Patricia Schneider

Trawling aquatic life for new models in biomedical research and evolutionary developmental biology, Patricia N. Schneider, Frauke Seemann, Matthew P. Harris, and Ingo Braasch

The coevolution of fungus-ant agriculture, Ted R. Schultz, Jeffrey Sosa-Calvo, Matthew P. Kweskin, Michael W. Lloyd, Bryn Dentinger, Pepijn W. Kooij, Else C. Vellinga, Stephen A. Rehner, Andre Rodrigues, Quimi V. Montoya, et al.

Comparative transcriptomics of the chilling stress response in two Asian mangrove species, Bruguiera gymnorhiza and Rhizophora apiculata, Aidan W. Short, John Sunoj V. Sebastian, Jie Huang, Guannan Wang, Maheshi Dassanayake, Patrick M. Finnegan, John D. Parker, Kun Fang Cao, and Alison K.S. Wee

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Reassignment of a junior synonym of Lepisosteus oculatus Winchell 1864 to L. platostomus Rafinesque 1820, Daniel Sinopoli, Thomas J. Near, Solomon R. David, and Prosanta Chakrabarty

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Complexity of avian evolution revealed by family-level genomes, Josefin Stiller, Shaohong Feng, Al Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey Kozlov, Alexandros Stamatakis, Santiago Claramunt, et al.

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COP5/HKR1 changes ciliary beat pattern and biases cell steering during chemotaxis in Chlamydomonas reinhardtii, Alexis Strain, Nathan Kratzberg, Dan Vu, Emmaline Miller, Ken Ichi Wakabayashi, Adam Melvin, and Naohiro Kato

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Trophic interactions in microbiomes influence plant host population size and ecosystem function, Jiaqi Tan, Na Wei, and Martin M. Turcotte

Role of sexually dimorphic oxytocin receptor-expressing neurons in the anteroventral periventricular nucleus on maternal behavior, Ryoichi Teruyama and Armita A. Govar

Why biodiversity matters in the lab, Richmond Thompson, Yvon Delville, and Christine Lattin

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Klebsiella pneumoniae DedA family proteins have redundant roles in divalent cation homeostasis and resistance to phagocytosis, Vijay Tiwari, Amit Sharma, Reygan Braga, Emily Garcia, Ridhwana Appiah, Renee Fleeman, Basel H. Abuaita, Marianna Patrauchan, and William T. Doerrler

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VenomCap: An exon-capture probe set for the targeted sequencing of snake venom genes, Scott L. Travers, Carl R. Hutter, Christopher C. Austin, Stephen C. Donnellan, Matthew D. Buehler, Christopher E. Ellison, and Sara Ruane

From earthquakes to island area: multi-scale effects upon local diversity, Liam A. Trethowan, Fabian Brambach, Rodrigo Cámara-Leret, Yves Laumonier, Douglas Sheil, J. W. Ferry Slik, Campbell O. Webb, Agustinus Murdjoko, Meredith L. Bastian, Kuswata Kartawinata, et al.

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Comparative Transcriptomic Analyses Reveal Differences in the Responses of Diploid and Triploid Eastern Oysters to Environmental Stress, Rujuta V Vaidya, Sarah Bodenstein, Dildorakhon Rasulova, Jerome F La Peyre, and Morgan W Kelly

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Toward a comparative framework for studies of altitudinal migration, David Vander Pluym and Nicholas A. Mason

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Bicarbonate is a key regulator but not a substrate for O2 evolution in Photosystem II, David J. Vinyard and Govindjee Govindjee

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Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta), Saskia Wutke, Stephan M. Blank, Jean Luc Boevé, Brant C. Faircloth, Frank Koch, Catherine R. Linnen, Tobias Malm, Gengyun Niu, Marko Prous, Nathan M. Schiff, et al.

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Combined Toxicity of Multi-Walled Carbon Nanotubes and Cu2+ on the Growth of Ryegrass: Effect of Surface Modification, Dose, and Exposure Time Pattern, Wenwen Xie, Cheng Peng, Weiping Wang, Xiaoyi Chen, Jiaqi Tan, and Wei Zhang

Unveiling the impacts of biodegradable microplastics on cadmium toxicity, translocation, transformation, and metabolome in lettuce, Xiang Xu, Cheng Peng, Xuechun Shao, Kailin Gong, Xuan Zhao, Wenwen Xie, Wei Zhang, and Jiaqi Tan

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Opposing genetic patterns of range shifting temperate and tropical gastropods in an area undergoing tropicalisation, Karolina M. Zarzyczny, Michael E. Hellberg, Elena B. Lugli, Moira MacLean, David A. Paz-García, Marc Rius, Ethan G. Ross, Erick X. Treviño Balandra, James Vanstone, Suzanne T. Williams, et al.

Submissions from 2023

The diffusive Lotka–Volterra competition model in fragmented patches I: Coexistence, A. Acharya, S. Bandyopadhyay, J. T. Cronin, J. Goddard, A. Muthunayake, and R. Shivaji

Effect of high-risk factors on postoperative major adverse cardiovascular and cerebrovascular events trends following bariatric surgery in the United States from 2012 to 2019, Linda Adepoju, Denise Danos, Christian Green, Michael W. Cook, Philip R. Schauer, and Vance L. Albaugh

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A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae, Laymon D. Ball, Ana M. Bedoya, Charlotte M. Taylor, and Laura P. Lagomarsino

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Identification of oral therapeutics using an AI platform against the virus responsible for COVID-19, SARS-CoV-2, Adam Bess, Frej Berglind, Supratik Mukhopadhyay, Michal Brylinski, Chris Alvin, Fanan Fattah, and Kishor M. Wasan

Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution, Kevin R. Bredemeyer, La Deana Hillier, Andrew J. Harris, Graham M. Hughes, Nicole M. Foley, Colleen Lawless, Rachel A. Carroll, Jessica M. Storer, Mark A. Batzer, Edward S. Rice, et al.

Tree Set Visualization, Exploration, and Applications, Jeremy M. Brown, Genevieve G. Mount, Kyle A. Gallivan, and James C. Wilgenbusch

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VCP promotes tTAF-target gene expression and spermatocyte differentiation by downregulating mono-ubiquitylated H2A, Tyler J. Butsch, Olga Dubuisson, Alyssa E. Johnson, and K. Adam Bohnert

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Rbp4-Gal4, a germline driver that activates in meiosis, reveals functions for VCP in spermatid development, Tyler J. Butsch, Alyssa E. Johnson, and K. Adam Bohnert

Explaining Life Through Evolution, Prosanta Chakrabarty

Density-dependent within-patch movement behavior of two competing species, James T. Cronin, Jerome Goddard, Aaron Krivchenia, and Ratnasingham Shivaji

Mean–variance scaling and stability in commercial sex work networks, Tad A. Dallas and Bret D. Elderd

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Phylogenomics of trans-Andean tetras of the genus Hyphessobrycon Durbin 1908 (Stethaprioninae: Characidae) and colonization patterns of Middle America, Diego J. Elías, Caleb D. McMahan, Fernando Alda, Carlos García-Alzate, Pamela B. Hart, and Prosanta Chakrabarty

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A high-quality de novo genome assembly for clapper rail (Rallus crepitans), Elisa C. Elizondo, Brant C. Faircloth, Robb T. Brumfield, Subir B. Shakya, Vincenzo A. Ellis, Carl J. Schmidt, Adrienne I. Kovach, and W. Gregory Shriver

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Special Issue in Honor of Dr. Alfred L. Gardner, Jacob A. Esselstyn and Giovani Hernández-Canchola

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SPIN-4/Spinster supports sperm activation in C. elegans via sphingosine-1-phosphate transport, Yash Flora and K. Adam Bohnert

The C-terminal domain of the ferric uptake regulator (Fur) binds a [2Fe–2S] cluster to sense the intracellular free iron content in Escherichia coli, Chelsey R. Fontenot and Huangen Ding

Insight into Bioaccumulation of Decabromodiphenyl Ethane in Eisenia fetida Increased by Microplastics, Mengru Fu, Jiaqi Tan, Shanqi Zhou, Siyuan Ling, Shuangqing Hu, Zhihua Qiao, Yanna Han, Wei Zhang, and Cheng Peng

Acrylonitrile butadiene styrene microplastics aggravate the threat of decabromodiphenyl ethane to Eisenia fetida: Bioaccumulation, tissue damage, and transcriptional responses, Mengru Fu, Jiaqi Tan, Shanqi Zhou, Peng Liu, Zhihua Qiao, Yanna Han, Wei Zhang, and Cheng Peng

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The AEGEAN-169 clade of bacterioplankton is synonymous with SAR11 subclade V (HIMB59) and metabolically distinct, Eric W. Getz, V. Celeste Lanclos, Conner Y. Kojima, Chuankai Cheng, Michael W. Henson, Max Emil Schön, Thijs J.G. Ettema, Brant C. Faircloth, and J. Cameron Thrash

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Widespread sympatry in a species-rich clade of marine fishes (Carangoidei), Jessica R. Glass, Richard C. Harrington, Peter F. Cowman, Brant C. Faircloth, and Thomas J. Near

Ecological release and patch geometry can cause nonlinear density–area relationships, Jerome Goddard, Ratnasingham Shivaji, and James T. Cronin

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Entorhinal cortical delta oscillations drive memory consolidation, Juhee Haam, Suman Gunin, Leslie Wilson, Sydney Fry, Briana Bernstein, Eric Thomson, Hayden Noblet, Jesse Cushman, and Jerrel L. Yakel

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Exposing the error hidden in plain sight: A critique of Calder's (1983) group selectionist seed-dispersal hypothesis for mistletoe “mimicry” of host plants, Kyle E. Harms, David M. Watson, Luis Y. Santiago-Rosario, and Sarah Mathews

Conservation implications for the world’s most widely distributed cavefish species complex based on population genomics (Typhlichthys, Percopsiformes), Pamela B. Hart, Matthew L. Niemiller, Jonathan W. Armbruster, and Prosanta Chakrabarty

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Cationic Cobalt(II) Bisphosphine Hydroformylation Catalysis: In Situ Spectroscopic and Reaction Studies, Drew M. Hood, Ryan A. Johnson, David J. Vinyard, Frank R. Fronczek, and George G. Stanley

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The master growth regulator DELLA binding to histone H2A is essential for DELLA-mediated global transcription regulation, Xu Huang, Hao Tian, Jeongmoo Park, Dong Ha Oh, Jianhong Hu, Rodolfo Zentella, Hong Qiao, Maheshi Dassanayake, and Tai Ping Sun

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Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow, Oscar Johnson, Camila C. Ribas, Alexandre Aleixo, Luciano N. Naka, Michael G. Harvey, and Robb T. Brumfield

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Effect of estradiol and predator cues on behavior and brain responses of captive female house sparrows (Passer domesticus), Melanie G. Kimball, Courtney T. Harding, Kaitlin E. Couvillion, Keegan R. Stansberry, Tosha R. Kelly, and Christine R. Lattin

Exploration of A novel environment is not correlated with object neophobia in wild-caught house sparrows (Passer domesticus), Melanie G. Kimball and Christine R. Lattin

The "seven Deadly Sins" of Neophobia Experimental Design, Melanie G. Kimball and Christine R. Lattin

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Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa, V. Celeste Lanclos, Anna N. Rasmussen, Conner Y. Kojima, Chuankai Cheng, Michael W. Henson, Brant C. Faircloth, Christopher A. Francis, and J. Cameron Thrash

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DNA assays for genetic discrimination of three Phragmites australis subspecies in the United States, Denise L. Lindsay, Xin Guan, Nathan E. Harms, James T. Cronin, Laura A. Meyerson, and Richard F. Lance

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A reference genome for Bluegill (Centrarchidae: Lepomis macrochirus), William B. Ludt, Eamon C. Corbett, Jerry Kattawar, Prosanta Chakrabarty, and Brant C. Faircloth

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The use of single-cell sequencing to reveal stem/progenitor cells in animal organ regeneration, Suxiang Lu, Igor Schneider, Honghui Zeng, and Shunping He

Unmasking hidden genetic, vocal, and size variation in the Masked Flowerpiercer along the Andes supports two species separated by Northern Peruvian Low, Silvia C. Martínez-Gómez, Carlos Esteban Lara, J. V. Remsen, Robb T. Brumfield, and Andrés M. Cuervo

Atlas of Australasian hormurid scorpions. I. The genus Hormurus Thorell, 1876 in Papua New Guinea. Exceptional morphological diversity in male and female copulatory structures suggests genital coevolution, Lionel Monod, Christina Lehmann-Graber, Christopher C. Austin, Bulisa Iova, and Lorenzo Prendini

Specimen collection is essential for modern science, Michael W. Nachman, Elizabeth J. Beckman, Rauri C.K. Bowie, Carla Cicero, Chris J. Conroy, Robert Dudley, Tyrone B. Hayes, Michelle S. Koo, Eileen A. Lacey, Christopher H. Martin, et al.

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Cells collectively migrate during ammonium chemotaxis in Chlamydomonas reinhardtii, Gabela Nelson, Alexis Strain, Atsuko Isu, Alireza Rahnama, Ken ichi Wakabayashi, Adam T. Melvin, and Naohiro Kato

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Transcription Factor PecS Mediates Agrobacterium fabrum Fitness and Survival, George C. Nwokocha, Prava Adhikari, Asif Iqbal, Hannah Elkholy, William T. Doerrler, John C. Larkin, and Anne Grove

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Handling and restraint induce a significant increase in plasma corticosterone in Hispaniolan Amazon parrots (Amazona ventralis), Shelby N. Parks, Thomas N. Tully, Aspen L. Settle, and Christine R. Lattin

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Editorial: Innovative approaches to coral reef science by early career researchers, David A. Paz-García, Eric J. Armstrong, Iva Popovic, Raúl A. González-Pech, and Michael E. Hellberg

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Sexual dimorphism in corallite size and modularity of a broadcast spawning coral, Porites lobata, Ricardo M. Pedraza-Pohlenz, Eduardo F. Balart, J. J.Adolfo Tortolero-Langarica, Alma Paola Rodríguez-Troncoso, Michael E. Hellberg, Orión Norzagaray-López, Rafael A. Cabral-Tena, Amílcar Leví Cupul-Magaña, and David A. Paz-García

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Cannabidiol acts as molecular switch in innate immune cells to promote the biosynthesis of inflammation-resolving lipid mediators, Lukas K. Peltner, Lars Gluthmann, Friedemann Börner, Simona Pace, Robert K. Hoffstetter, Christian Kretzer, Rosella Bilancia, Federica Pollastro, Andreas Koeberle, Giovanni Appendino, et al.

A COMPREHENSIVE NATURAL HISTORY REVIEW OF CHLOSYNE LACINIA (GEYER, 1837; LEPIDOPTERA: NYMPHALIDAE): PATTERNS OF PHENOTYPIC VARIATION AND GEOGRAPHIC DISTRIBUTION, Jamie M. Phelps, Luis Y. Santiago-Rosario, Diego Paredes-Burneo, and Kyle E. Harms

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Microbiome environmental shifts differ between two co-occurring octocoral hosts, Alicia M. Reigel and Michael E. Hellberg

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Unhealthy herds and the predator–spreader: Understanding when predation increases disease incidence and prevalence, Robert L. Richards, Bret D. Elderd, and Meghan A. Duffy

Investigating membrane-binding properties of lipoxygenases using surface plasmon resonance, Denise L. Rohlik, Ethan Patel, Nathaniel C. Gilbert, Adam R. Offenbacher, and Brandon L. Garcia

Theobroma flaviflorum (Malvaceae: Byttnerioideae), a New Species from the Osa Peninsula, Costa Rica, Daniel Santamaría-Aguilar, Reinaldo Aguilar Fernández, and Laura P. Lagomarsino

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Low sodium availability in hydroponically manipulated host plants promotes cannibalism in a lepidopteran herbivore, Luis Y. Santiago-Rosario, Ana L. Salgado, Diego Paredes-Burneo, and Kyle E. Harms

Speciation-by-Extinction, Glenn F. Seeholzer and Robb T. Brumfield

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Sexually dimorphic oxytocin receptor-expressing (OXTR) neurons in the anteroventral periventricular nucleus (AVPV) in the postpartum female mouse are involved in maternal behavior, Kaustubh Sharma, Armita A. Govar, Bandana Ghimire, Katsuhiko Nishimori, Elizabeth Hammock, and Ryoichi Teruyama

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Skinks of Oceania, New Guinea, and Eastern Wallacea: an underexplored biodiversity hotspot, Alex Slavenko, Allen Allison, Christopher C. Austin, Aaron M. Bauer, Rafe M. Brown, Robert N. Fisher, Ivan Ineich, Bulisa Iova, Benjamin R. Karin, Fred Kraus, et al.

Phylogenomic Analysis of the Parrots of the World Distinguishes Artifactual from Biological Sources of Gene Tree Discordance, Brian Tilston Smith, Jon Merwin, Kaiya L. Provost, Gregory Thom, Robb T. Brumfield, Mateus Ferreira, William M. Mauck, Robert G. Moyle, Timothy F. Wright, and Leo Joseph

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Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons, Erik F. Sørensen, R. Alan Harris, Liye Zhang, Muthuswamy Raveendran, Lukas F.K. Kuderna, Jerilyn A. Walker, Jessica M. Storer, Martin Kuhlwilm, Claudia Fontsere, Lakshmi Seshadri, et al.

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Framework of the Alu Subfamily Evolution in the Platyrrhine Three-Family Clade of Cebidae, Callithrichidae, and Aotidae, Jessica M. Storer, Jerilyn A. Walker, Jasmine N. Baker, Shifat Hossain, Christian Roos, Travis J. Wheeler, and Mark A. Batzer

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Extensive Independent Amplification of Platy-1 Retroposons in Tamarins, Genus Saguinus, Jessica M. Storer, Jerilyn A. Walker, Thomas O. Beckstrom, and Mark A. Batzer

Mycoplasmataceae dominate microbial community differences between gut regions in mammals with a simple gut architecture, Mark T. Swanson, Michael W. Henson, Heru Handika, Anang S. Achmadi, Syahfitri Anita, Kevin C. Rowe, and Jacob A. Esselstyn

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Editorial: Emerging research organisms in regenerative biology, Stefano Tiozzo and Igor Schneider

Inhibition of Fosfomycin Resistance Protein FosB from Gram-Positive Pathogens by Phosphonoformate, Skye Travis, Keith D. Green, Nathaniel C. Gilbert, Oleg V. Tsodikov, Sylvie Garneau-Tsodikova, and Matthew K. Thompson

Viral transmission and infection prevalence in a cannibalistic host–pathogen system, Benjamin G. Van Allen, Forrest Dillemuth, Vanja Dukic, and Bret D. Elderd

Systematics of the Neopelminae (Aves: Passeriformes: Pipridae) with description of a new genus, Paul van Els, Michael G. Harvey, João M.G. Capurucho, Robb T. Brumfield, Bret M. Whitney, and José F. Pacheco

A low-cost and realistic noisy light system for studying photosynthesis, David J. Vinyard

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Environment and Host Genetics Influence the Biogeography of Plant Microbiome Structure, Na Wei and Jiaqi Tan

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Erratum: Correction to: Environment and Host Genetics Influence the Biogeography of Plant Microbiome Structure (Microbial ecology (2023) 86 4 (2858-2868)), Na Wei and Jiaqi Tan

Environmentally persistent free radicals enhance SARS-CoV-2 replication in respiratory epithelium, Ayaho Yamamoto, Peter D. Sly, Keng Yih Chew, Lavrent Khachatryan, Nelufa Begum, Abrey J. Yeo, Luan D. Vu, and Kirsty R. Short

Submissions from 2022

Scintillation light detection in the 6-m drift-length ProtoDUNE Dual Phase liquid argon TPC, A Abed Abud, B Abi, R Acciarri, M A. Acero, M R. Adames, G Adamov, M Adamowski, and D Adams

Regulation of body weight: Lessons learned from bariatric surgery, Vance L. Albaugh, Yanlin He, Heike Münzberg, Christopher D. Morrison, Sangho Yu, and Hans-Rudolf Berthoud

An Overview of Obesity, Cholesterol, and Systemic Inflammation in Preeclampsia, Morgan C. Alston, Leanne M. Redman, and Jennifer L. Sones

Evaluation of Hemp (Cannabis sativa) (Rosales: Cannabaceae) as an Alternative Host Plant for Polyphagous Noctuid Pests, Nathan C. Arey, Nathan P. Lord, and Jeffrey A. Davis