Follow


Submissions from 2022

Altered cyclone-fire interactions are changing ecosystems, Thomas Ibanez, William J. Platt, Peter J. Bellingham, Ghislain Vieilledent, Janet Franklin, Patrick H. Martin, Christophe Menkes, and Diego R. Pérez-Salicrup

Strong floristic distinctiveness across Neotropical successional forests, Catarina C. Jakovac, Jorge A. Meave, Frans Bongers, Susan G. Letcher, Juan Manuel Dupuy, Daniel Piotto, Danaë M. Rozendaal, and Marielos Peña-Claros

Community stability is related to animal diversity change, Marta A. Jarzyna, Kari E. A. Norman, Jalene M. LaMontagne, Matthew R. Helmus, Daijiang Li, Stephanie M. Parker, Mariana Perez Rocha, Sydne Record, Eric R. Sokol, Phoebe L. Zarnetske, et al.

Differential DNA methylation across environments has no effect on gene expression in the eastern oyster, Kevin M. Johnson, Kyle A. Sirovy, and Morgan W. Kelly

Psb27, a photosystem II assembly protein, enables quenching of excess light energy during its participation in the PSII lifecycle, Virginia M. Johnson, Sandeep Biswas, Johnna L. Roose, Himadri B. Pakrasi, and Haijun Liu

Cross-Omics Analysis of Fenugreek Supplementation Reveals Beneficial Effects Are Caused by Gut Microbiome Changes Not Mammalian Host Physiology, Katarina A. Jones, Allison J. Richard, J Michael Salbaum, Susan Newman, Richard Carmouche, Sara Webb, Annadora J. Bruce-Keller, and Jacqueline M. Stephens

Oxidative modification of LHC II associated with photosystem II and PS I-LHC I-LHC II membranes, Ravindra S. Kale, Jacob L. Seep, Larry Sallans, Laurie K. Frankel, and Terry M. Bricker

Alternates Peroxisomal Contents in Response to Trophic Conditions, Naohiro Kato, Clayton McCuiston, Kimberly A. Szuska, Kyle J. Lauersen, Gabela Nelson, and Alexis Strain

Infant Feeding Varies Across Eating Behavior and Feeding Modalities in Mothers With Low Income, Maryam Kebbe, Abby D. Altazan, Robbie A. Beyl, L Anne Gilmore, and Leanne M. Redman

Experimental evolution reveals complex responses to environmental change, Morgan W. Kelly

A transient reduction in circulating corticosterone reduces object neophobia in male house sparrows, Tosha R. Kelly, Kenedi I. Lynch, Kaitlin E. Couvillion, Jaimie N. Gallagher, Keegan R. Stansberry, Melanie G. Kimball, and Christine R. Lattin

Novel objects alter immediate early gene expression globally for ZENK and regionally for c-Fos in neophobic and non-neophobic house sparrows, Melanie G. Kimball, Eve B. Gautreaux, Kaitlin E. Couvillion, Tosha R. Kelly, Keegan R. Stansberry, and Christine R. Lattin

Liver Kinase B1 Regulates Remodeling of the Tumor Microenvironment in Triple-Negative Breast Cancer, Connor T. King, Margarite D. Matossian, Jonathan J. Savoie, Khoa Nguyen, Maryl K. Wright, C Ethan Byrne, Steven Elliott, and Hope E. Burks

Behavior and neural activation patterns of non-redundant visual and acoustic signaling during courtship in an African cichlid fish, Teisha King, Emily J. Ray, Brandon Tramontana, and Karen Maruska

Behavior and neural activation patterns of non-redundant visual and acoustic signaling during courtship in an African cichlid fish, Teisha King, Emily J. Ray, Brandon Tramontana, and Karen Maruska

Behavior and neural activation patterns of non-redundant visual and acoustic signaling during courtship in an African cichlid fish, Teisha King, Emily J. Ray, Brandon Tramontana, and Karen Maruska

Stress-induced perturbations in intracellular amino acids reprogram mRNA translation in osmoadaptation independently of the ISR, Dawid Krokowski, Raul Jobava, Krzysztof J. Szkop, Chien-Wen Chen, Xu Fu, Sarah Venus, Bo-Jhih Guan, and Jing Wu

Activating transcription factor 6 protects against endothelial barrier dysfunction, Khadeja-Tul Kubra, Mohammad S. Akhter, Yogesh Saini, Konstantin G. Kousoulas, and Nektarios Barabutis

Yeast Crf1p: An activator in need is an activator indeed, Sanjay Kumar, Muneera Mashkoor, and Anne Grove

Spectral And Intensity Control Of High Energy Terahertz Radiation From Bulk Liquids, V R. Kumar, K Jana, I Dey, K C. Vardhan, V R. Kumar, J M. Brown, M B. Gaarde, A Couairon, and G R. Kumar

Increased resolution in the face of conflict: phylogenomics of the Neotropical bellflowers (Campanulaceae: Lobelioideae), a rapid plant radiation, Laura P. Lagomarsino, Lauren Frankel, Simon Uribe-Convers, Alexandre Antonelli, and Nathan Muchhala

Increased resolution in the face of conflict: phylogenomics of the Neotropical bellflowers (Campanulaceae: Lobelioideae), a rapid plant radiation, Laura P. Lagomarsino, Lauren Frankel, Simon Uribe-Convers, Alexandre Antonelli, and Nathan Muchhala

A CURE for Physiological Characterization of Bacterioplankton in Liquid Culture, V Celeste Lanclos, Jordan T. Coelho, Catie S. Cleveland, Alex J. Hyer, Mindy C. McCallum, Emily R. Savoie, Scott Kosiba, and J Cameron Thrash

A CURE for Physiological Characterization of Bacterioplankton in Liquid Culture, V Celeste Lanclos, Jordan T. Coelho, Catie S. Cleveland, Alex J. Hyer, Mindy C. McCallum, Emily R. Savoie, Scott Kosiba, and J Cameron Thrash

Constitutive gene expression differs in three brain regions important for cognition in neophobic and non-neophobic house sparrows (Passer domesticus), Christine R. Lattin, Cheryl S. Rosenfeld, Tosha R. Kelly, Morgan W. Kelly, and Kevin M. Johnson

Recent advances of carbon-based nano zero valent iron for heavy metals remediation in soil and water: A critical review, Weiyu Liang, Gehui Wang, Cheng Peng, Jiaqi Tan, Jiang Wan, Pengfei Sun, Qiannan Li, and Xiaowen Ji

Urbanization delays plant leaf senescence and extends growing season length in cold but not in warm areas of the Northern Hemisphere, Daijiang Li, Brian J. Stucky, Benjamin Baiser, Robert Guralnick, and Patricia Morellato

Brominated flame retardants (BFRs) in sediment from a typical e-waste dismantling region in Southern China: Occurrence, spatial distribution, composition profiles, and ecological risks, Siyuan Ling, Shanqi Zhou, Jiaqi Tan, Cong Lu, Mengru Fu, Cheng Peng, Wei Zhang, and Shuangqing Hu

Chemical Ecology of Oviposition Dynamics in Drosophila suzukii (Diptera: Drosophilidae), Aerianna Littler, Pritika Pandey, Kenneth L. O'Dell, and Zainulabeuddin Syed

PDF

Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687), Devin P. Locke, La Deana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny, Shiaw Pyng Yang, Zhengyuan Wang, Asif T. Chinwalla, Pat Minx, et al.

Chronic stress and captivity alter the cloacal microbiome of a wild songbird, Anne A. Madden, Angela M. Oliverio, Patrick J. Kearns, Jessica B. Henley, Noah Fierer, Philip T. B. Starks, Benjamin E. Wolfe, L. Michael Romero, and Christine R. Lattin

Expert range maps of global mammal distributions harmonised to three taxonomic authorities, Charles J. Marsh, Yanina V. Sica, Connor J. Burgin, Wendy A. Dorman, Robert C. Anderson, Isabel Del Toro Mijares, Jessica G. Vigneron, and Vijay Barve

Genetic, vocal, and body size divergence across the Northern Peruvian Low supports two species within the Masked Flowerpiercer (Diglossa cyanea), Silvia C. Martínez-Gómez, Carlos Esteban Lara, J. V. Remsen Jr., Robb T. Brumfield, and Andrés M. Cuervo

Endocrine and neuroendocrine regulation of social status in cichlid fishes, Karen P. Maruska, Chase M. Anselmo, Teisha King, Robert B. Mobley, Emily J. Ray, and Rose Wayne

Will the application of biocontrol fungi disrupt predation of Acanthococcus lagerstroemiae by coccinellids?, Giovana Matos Franco, Yan Chen, Vinson P. Doyle, Stephen A. Rehner, and Rodrigo Diaz

The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex, J Keller McKowen, Satya V. Avva, Mukesh Maharjan, Fabiana M. Duarte, Jacob M. Tome, Julius Judd, Jamie L. Wood, and Sunday Negedu

A genome resource for Acacia, Australia's largest plant genus, Todd G. McLay, Daniel J. Murphy, Gareth D. Holmes, Sarah Mathews, Gillian K. Brown, David J. Cantrill, Frank Udovicic, and Theodore R. Allnutt

Link

Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes, Bruno F. Melo, Brian L. Sidlauskas, Thomas J. Near, Fabio F. Roxo, and Ava Ghezelayagh

Unbiased genetic screen identifies Caenorhabditis elegans genes conserved for nodavirus genome replication, Fei Meng, Teng Yan, Krishna Dahal, and Rui Lu

Expression and localization of neuronal nitric oxide synthase in the brain and sensory tissues of the African cichlid fish Astatotilapia burtoni, Robert B. Mobley, Emily J. Ray, and Karen P. Maruska

Systematics Of Lepidothrix Manakins (Aves: Passeriformes: Pipridae) Using Radcap Markers, A E. Moncrieff, B C. Faircloth, and R T. Brumfield

Comparing Likelihood Ratios To Understand Genome-Wide Variation In Phylogenetic Support, G G. Mount and J M. Brown

DeepDrug: Applying AI for the Advancement of Drug Discovery, Supratik Mukhopadhyay, Michal Brylinski, Adam Bess, Frej Berglind, Chris Galliano, and Patrick F. McGrew

River Network Rearrangements Promote Speciation In Lowland Amazonian Birds, L J. Musher, M Giakoumis, J Albert, G Del-Rio, L J. Musher, G Thom, A Aleixo, C C. Ribas, R T. Brumfield, B T. Smith, et al.

River network rearrangements promote speciation in lowland Amazonian birds, Lukas J. Musher, Melina Giakoumis, James Albert, Glaucia Del-Rio, Marco Rego, Gregory Thom, Alexandre Aleixo, Camila C. Ribas, Robb T. Brumfield, Brian Tilston Smith, et al.

Tctp regulates the level and localization of Foxo for cell growth in Drosophila, Sujin Nam, Thao Phuong Le, SeYeon Chung, and Kwang-Wook Choi

Global response of conservationists across mass media likely constrained bat persecution due to COVID-19, Veronica Nanni, Stefano Mammola, Nuria Macías-Hernández, Alessia Castrogiovanni, Ana L. Salgado, Enrico Lunghi, Gentile Francesco Ficetola, and Corrado Modica

Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed), Dong‐Ha Oh, Kurt P. Kowalski, Quynh N. Quach, Chathura Wijesinghege, Philippa Tanford, Maheshi Dassanayake, and Keith Clay

Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed), Dong‐Ha Oh, Kurt P. Kowalski, Quynh N. Quach, Chathura Wijesinghege, Philippa Tanford, Maheshi Dassanayake, and Keith Clay

Role of Nischarin in the pathology of diseases: a special emphasis on breast cancer, Samuel C. Okpechi, Hassan Yousefi, Khoa Nguyen, Thomas Cheng, Nikhilesh V. Alahari, Bridgette Collins-Burow, Matthew E. Burow, and Suresh K. Alahari

PDF

Exploring The Effects Of Genetic Variation On Gene Regulation In Cancer In The Context Of 3D Genome Structure, N Osman, A M. Shawky, and M Brylinski

Living with high potassium: balance between nutrient acquisition and K-induced salt stress signaling, Pramod Pantha, Dong-Ha Oh, David Longstreth, and Maheshi Dassanayake

Investigating physical and mechanical properties of nest soils used by mud dauber wasps from a geotechnical engineering perspective, Joon S. Park, Noura S. Saleh, Hai Lin, Hussein Alqrinawi, and Nathan P. Lord

Prolonged effects of DPP-4 inhibitors on steato-hepatitic changes in Sprague-Dawley rats fed a high-cholesterol diet, Rashmi Pathak, Avinash Kumar, Henry A. Palfrey, Kirsten P. Stone, Narayan R. Raju, Thomas W. Gettys, and Subramanyam N. Murthy

PDF

Bridging the Research Gap between Live Collections in Zoos and Preserved Collections in Natural History Museums, Sinlan Poo, Steven M. Whitfield, Alexander Shepack, Gregory J. Watkins-Colwell, Gil Nelson, Jillian Goodwin, Allison Bogisich, Patricia L.R. Brennan, Jennifer D'agostino, Michelle S. Koo, et al.

PDF

An Integrated Network Representation Of Multiple Cancer-Specific Data For Graph-Based Machine Learning, L M. Pu, M Singha, H C. Wu, C Busch, L M. Pu, and M Brylinski

Evaluation of Photosynthetic Efficiency in Photorespiratory Mutants by Chlorophyll Fluorescence Analysis, Joseph Qian, Nicholas Ferrari, Richard Garcia, Mary Beth Rollins, and Paul F. South

Oxidative stress and detoxification mechanisms of earthworms (Eisenia fetida) after exposure to flupyradifurone in a soil-earthworm system, Zhihua Qiao, Peiyao Li, Jiaqi Tan, Cheng Peng, Fengwen Zhang, Wei Zhang, and Xingyin Jiang

A Rapid Method for Detecting Normal or Modified Plant and Algal Carbonic Anhydrase Activity Using, Ashwani K. Rai, Robert J. DiMario, Remmy W. Kasili, Michael Groszmann, Asaph B. Cousins, David Donze, and James V. Moroney

A set of principles and practical suggestions for equitable fieldwork in biology, Valeria Ramírez-Castañeda, Erin P. Westeen, Jeffrey Frederick, Sina Amini, Daniel R. Wait, Anang S. Achmadi, Noviar Andayani, and Evy Arida

Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in Caenorhabditis elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson

Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in C. elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson

A draft of the genome of the Gulf Coast tick, Amblyomma maculatum, Jose M. Ribeiro, Natalia J. Bayona-Vásquez, Khemraj Budachetri, Deepak Kumar, Julia Catherine Frederick, Faizan Tahir, Brant C. Faircloth, and Travis C. Glenn

Loss of Adipocyte STAT5 Confers Increased Depot-Specific Adiposity in Male and Female Mice That Is Not Associated With Altered Adipose Tissue Lipolysis, Allison J. Richard, Hardy Hang, Timothy D. Allerton, Peng Zhao, Tamra Mendoza, Sujoy Ghosh, Carrie M. Elks, and Jacqueline M. Stephens

A Community-Integrated Geographic Information System Study of Air Pollution Exposure Impacts in Colfax, LA, Jennifer Richmond-Bryant, Matilda Odera, Wilma Subra, Brenda Vallee, Chloe Tucker, Christopher Oliver, Alyanna Wilson, and Jessica Tran

An Attenuated HSV-1-Derived Malaria Vaccine Expressing Liver-Stage Exported Proteins Induces Sterilizing Protection against Infectious Sporozoite Challenge, Paul J. Rider, Mohd Kamil, Ilknur Yilmaz, Habibe N. Atmaca, Merve Kalkan-Yazici, Mehmet Ziya Doymaz, Konstantin G. Kousoulas, and Ahmed S. Aly

PDF

A new species of New Guinea Worm-Eating Snake (Serpentes, Elapidae, Toxicocalamus Boulenger, 1896) from Western Highlands Province, Papua New Guinea, Jackson R. Roberts, Bulisa Iova, and Christopher C. Austin

Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason

Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason

Linking inflammatory adipose tissue to placental abnormalities in obese preeclamptic pregnancies, Brianna N. Rogers, Jacqueline M. Stephens, and Jenny L. Sones

The role of bariatric and metabolic surgery in the development, diagnosis, and treatment of endometrial cancer, Robert C. Ross, Yetunde M. Akinde, Philip R. Schauer, Carel W. le Roux, Donal Brennan, Amelia M. Jernigan, Marco Bueter, and Vance L. Albaugh

Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard

Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard

Light-induced shifts in opsin gene expression in the four-eyed fish, Daniele Salgado, Bertha R. Mariluz, Maysa Araujo, Jamily Lorena, Louise N. Perez, Rafaela de Ribeiro, Josane de Sousa, and Patricia N. Schneider

Global urban environmental change drives adaptation in white clover, James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, and Samreen Munim

Link

Neo-sex chromosome evolution and phenotypic differentiation across an elevational gradient in horned larks (Eremophila alpestris), Subir B. Shakya, Cynthia Y. Wang-Claypool, Carla Cicero, Rauri C. K. Bowie, and Nicholas A. Mason

Solid-Support Directional (SSD) RNA-Seq as a Companion Method to CLIP-Seq, Abd-El Monsif Shawky, Mahmoud Dondeti, Zissimos Mourelatos, and Anastasios Vourekas

PDF

Pocket2Drug: An Encoder-Decoder Deep Neural Network For The Target-Based Drug Design, W T. Shi, M Singha, G Srivastava, L M. Pu, W T. Shi, and M Brylinski

Artificial intelligence to guide precision anticancer therapy with multitargeted kinase inhibitors, Manali Singha, Limeng Pu, Brent A. Stanfield, Ifeanyi K. Uche, Paul J. Rider, Konstantin G. Kousoulas, J Ramanujam, and Michal Brylinski

TFIIIC-based chromatin insulators through eukaryotic evolution, Rebecca E. Sizer, Nisreen Chahid, Sienna P. Butterfield, David Donze, Nia J. Bryant, and Robert J. White

The β integrin EGF domains support a constitutive extended conformation, and the cytoplasmic domain impairs outside-in signaling, Guannan Song, Fei Meng, and Bing-Hao Luo

MILYERINGIDAE: TYPHLEOTRIS, MALAGASY CAVEFISH, TOHO, John S. Sparks, Prosanta Chakrabarty, and Melanie L.J. Stiassny

Lifestyle interventions in pregnancy targeting GDM prevention: looking ahead to precision medicine, Joshua R. Sparks, Nidhi Ghildayal, Marie-France Hivert, and Leanne M. Redman

Impact of COVID-19 Stay-at-Home Orders on Health Behaviors and Anxiety in Black and White Americans, Joshua R. Sparks, Maryam Kebbe, Emily W. Flanagan, Robbie A. Beyl, Abby D. Altazan, Shengping Yang, and Leanne M. Redman

Cross protective efficacy of the Non-Neurotropic live attenuated herpes simplex virus type 1 vaccine VC-2 is enhanced by intradermal vaccination and deletion of glycoprotein G, Brent A. Stanfield, Fernando J. Bravo, David A. Dixon, Vladimir N. Chouljenko, Konstantin G. Kousoulas, and David I. Bernstein

Cebidae Element Alignments and a Complex Non-Human Primate Radiation, Jessica M. Storer, Jerilyn A. Walker, Morgan A. Brown, and Mark A. Batzer

Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer

Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer

PDF

Recently Integrated Alu Elements In Capuchin Monkeys: A Resource For Cebus/Sapajus Genomics, J M. Storer, J A. Walker, C E. Rockwell, G Mores, J M. Storer, J D. Orkin, A D. Melin, K A. Phillips, C Roos, and M A. Batzer

Divergence in the ABA gene regulatory network underlies differential growth control, Ying Sun, Dong-Ha Oh, Lina Duan, Prashanth Ramachandran, Andrea Ramirez, Anna Bartlett, Kieu-Nga Tran, Guannan Wang, Maheshi Dassanayake, and José R. Dinneny

Electron transfer activity of the nanodisc-bound mitochondrial outer membrane protein mitoNEET, Homyra Tasnim and Huangen Ding

PDF

On the Need for New Measures of Phylogenomic Support, Robert C. Thomson and Jeremy M. Brown

Utility of a Recombinant HSV-1 Vaccine Vector for Personalized Cancer Vaccines, Ifeanyi Kingsley Uche, Brent A. Stanfield, Jared S. Rudd, Konstantin G. Kousoulas, and Paul J. Rider

Elucidating the Colletotrichum spp. diversity responsible for papaya anthracnose in Brazil, Willie Anderson Vieira, Josiene Silva Veloso, Anthony Carlos Silva, Angélica Dos Nunes, Vinson P. Doyle, Lisa A. Castlebury, and Marcos Paz Câmara

Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker

Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker

Multifunctional role of GPCR signaling in epithelial tube formation, Vishakha Vishwakarma, Thao Phuong Le, and SeYeon Chung

Link

IL-1 beta Promotes Expansion of IL-33(+) Lung Epithelial Stem Cells after Respiratory Syncytial Virus Infection during Infancy, Luan D. Vu, Anh T. Q. Phan, Diego R. Hijano, David T. Siefker, Heather Tillman, and Stephania A. Cormier

Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry

Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry