Submissions from 2022
Oxidative stress and detoxification mechanisms of earthworms (Eisenia fetida) after exposure to flupyradifurone in a soil-earthworm system, Zhihua Qiao, Peiyao Li, Jiaqi Tan, Cheng Peng, Fengwen Zhang, Wei Zhang, and Xingyin Jiang
A Rapid Method for Detecting Normal or Modified Plant and Algal Carbonic Anhydrase Activity Using, Ashwani K. Rai, Robert J. DiMario, Remmy W. Kasili, Michael Groszmann, Asaph B. Cousins, David Donze, and James V. Moroney
A set of principles and practical suggestions for equitable fieldwork in biology, Valeria Ramírez-Castañeda, Erin P. Westeen, Jeffrey Frederick, Sina Amini, Daniel R. Wait, Anang S. Achmadi, Noviar Andayani, and Evy Arida
Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in Caenorhabditis elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson
Reproductive tradeoffs govern sexually dimorphic tubular lysosome induction in C. elegans, Cara D. Ramos, K. Adam Bohnert, and Alyssa E. Johnson
A draft of the genome of the Gulf Coast tick, Amblyomma maculatum, Jose M. Ribeiro, Natalia J. Bayona-Vásquez, Khemraj Budachetri, Deepak Kumar, Julia Catherine Frederick, Faizan Tahir, Brant C. Faircloth, and Travis C. Glenn
Loss of Adipocyte STAT5 Confers Increased Depot-Specific Adiposity in Male and Female Mice That Is Not Associated With Altered Adipose Tissue Lipolysis, Allison J. Richard, Hardy Hang, Timothy D. Allerton, Peng Zhao, Tamra Mendoza, Sujoy Ghosh, Carrie M. Elks, and Jacqueline M. Stephens
A Community-Integrated Geographic Information System Study of Air Pollution Exposure Impacts in Colfax, LA, Jennifer Richmond-Bryant, Matilda Odera, Wilma Subra, Brenda Vallee, Chloe Tucker, Christopher Oliver, Alyanna Wilson, and Jessica Tran
An Attenuated HSV-1-Derived Malaria Vaccine Expressing Liver-Stage Exported Proteins Induces Sterilizing Protection against Infectious Sporozoite Challenge, Paul J. Rider, Mohd Kamil, Ilknur Yilmaz, Habibe N. Atmaca, Merve Kalkan-Yazici, Mehmet Ziya Doymaz, Konstantin G. Kousoulas, and Ahmed S. Aly
Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason
Reduced Expression of TMEM16A Impairs Nitric Oxide-Dependent Cl Transport in Retinal Amacrine Cells, Tyler Christopher Rodriguez, Li Zhong, Hailey Simpson, and Evanna Gleason
Linking inflammatory adipose tissue to placental abnormalities in obese preeclamptic pregnancies, Brianna N. Rogers, Jacqueline M. Stephens, and Jenny L. Sones
The role of bariatric and metabolic surgery in the development, diagnosis, and treatment of endometrial cancer, Robert C. Ross, Yetunde M. Akinde, Philip R. Schauer, Carel W. le Roux, Donal Brennan, Amelia M. Jernigan, Marco Bueter, and Vance L. Albaugh
Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard
Chloride facilitates Mn(III) formation during photoassembly of the Photosystem II oxygen-evolving complex, Brandon P. Russell and David J. Vinyard
Light-induced shifts in opsin gene expression in the four-eyed fish, Daniele Salgado, Bertha R. Mariluz, Maysa Araujo, Jamily Lorena, Louise N. Perez, Rafaela de Ribeiro, Josane de Sousa, and Patricia N. Schneider
Global urban environmental change drives adaptation in white clover, James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, and Samreen Munim
Neo-sex chromosome evolution and phenotypic differentiation across an elevational gradient in horned larks (Eremophila alpestris), Subir B. Shakya, Cynthia Y. Wang-Claypool, Carla Cicero, Rauri C. K. Bowie, and Nicholas A. Mason
Solid-Support Directional (SSD) RNA-Seq as a Companion Method to CLIP-Seq, Abd-El Monsif Shawky, Mahmoud Dondeti, Zissimos Mourelatos, and Anastasios Vourekas
Pocket2Drug: An Encoder-Decoder Deep Neural Network For The Target-Based Drug Design, W T. Shi, M Singha, G Srivastava, L M. Pu, W T. Shi, and M Brylinski
Artificial intelligence to guide precision anticancer therapy with multitargeted kinase inhibitors, Manali Singha, Limeng Pu, Brent A. Stanfield, Ifeanyi K. Uche, Paul J. Rider, Konstantin G. Kousoulas, J Ramanujam, and Michal Brylinski
TFIIIC-based chromatin insulators through eukaryotic evolution, Rebecca E. Sizer, Nisreen Chahid, Sienna P. Butterfield, David Donze, Nia J. Bryant, and Robert J. White
The β integrin EGF domains support a constitutive extended conformation, and the cytoplasmic domain impairs outside-in signaling, Guannan Song, Fei Meng, and Bing-Hao Luo
Lifestyle interventions in pregnancy targeting GDM prevention: looking ahead to precision medicine, Joshua R. Sparks, Nidhi Ghildayal, Marie-France Hivert, and Leanne M. Redman
Impact of COVID-19 Stay-at-Home Orders on Health Behaviors and Anxiety in Black and White Americans, Joshua R. Sparks, Maryam Kebbe, Emily W. Flanagan, Robbie A. Beyl, Abby D. Altazan, Shengping Yang, and Leanne M. Redman
Cross protective efficacy of the Non-Neurotropic live attenuated herpes simplex virus type 1 vaccine VC-2 is enhanced by intradermal vaccination and deletion of glycoprotein G, Brent A. Stanfield, Fernando J. Bravo, David A. Dixon, Vladimir N. Chouljenko, Konstantin G. Kousoulas, and David I. Bernstein
Cebidae Element Alignments and a Complex Non-Human Primate Radiation, Jessica M. Storer, Jerilyn A. Walker, Morgan A. Brown, and Mark A. Batzer
Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer
Owl Monkey Insertion Polymorphisms and Phylogenetics, Jessica M. Storer, Jerilyn A. Walker, Lydia C. Rewerts, Morgan A. Brown, Thomas O. Beckstrom, Scott W. Herke, Christian Roos, and Mark A. Batzer
Recently Integrated Alu Elements In Capuchin Monkeys: A Resource For Cebus/Sapajus Genomics, J M. Storer, J A. Walker, C E. Rockwell, G Mores, J M. Storer, J D. Orkin, A D. Melin, K A. Phillips, C Roos, and M A. Batzer
Divergence in the ABA gene regulatory network underlies differential growth control, Ying Sun, Dong-Ha Oh, Lina Duan, Prashanth Ramachandran, Andrea Ramirez, Anna Bartlett, Kieu-Nga Tran, Guannan Wang, Maheshi Dassanayake, and José R. Dinneny
Electron transfer activity of the nanodisc-bound mitochondrial outer membrane protein mitoNEET, Homyra Tasnim and Huangen Ding
On the Need for New Measures of Phylogenomic Support, Robert C. Thomson and Jeremy M. Brown
Utility of a Recombinant HSV-1 Vaccine Vector for Personalized Cancer Vaccines, Ifeanyi Kingsley Uche, Brent A. Stanfield, Jared S. Rudd, Konstantin G. Kousoulas, and Paul J. Rider
Elucidating the Colletotrichum spp. diversity responsible for papaya anthracnose in Brazil, Willie Anderson Vieira, Josiene Silva Veloso, Anthony Carlos Silva, Angélica Dos Nunes, Vinson P. Doyle, Lisa A. Castlebury, and Marcos Paz Câmara
Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker
Preface: special issues on photosystem II, David Vinyard, Charles F. Yocum, and Terry M. Bricker
Multifunctional role of GPCR signaling in epithelial tube formation, Vishakha Vishwakarma, Thao Phuong Le, and SeYeon Chung
IL-1 beta Promotes Expansion of IL-33(+) Lung Epithelial Stem Cells after Respiratory Syncytial Virus Infection during Infancy, Luan D. Vu, Anh T. Q. Phan, Diego R. Hijano, David T. Siefker, Heather Tillman, and Stephania A. Cormier
Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry
Absence of antibody responses to SARS-CoV-2 N protein in COVID-19 vaccine breakthrough cases, Luan D. Vu, Shonta Wallace, Anh Tq Phan, Rebecca C. Christofferson, Erik Turner, Sean Parker, Karen Elkind-Hirsch, and Darrell Landry
Functional trait data for vascular plant species from northeastern North America, Donald M. Waller, Alison K. Paulson, Jeannine H. Richards, William S. Alverson, Kathryn L. Amatangelo, Chengke Bai, Sarah E. Johnson, Daijiang Li, Grégory Sonnier, and Rachel H. Toczydlowski
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth, Hiruni N. Weerasooriya, Robert J. DiMario, Viviana C. Rosati, Ashwani K. Rai, Lillian M. LaPlace, Victoria D. Filloon, David J. Longstreth, and James V. Moroney
The Spraguea Parasitism in Anglerfishes of the Genus Lophius, Earl Weidner
Microsporidia Have a Peculiar Outer Membrane with Exterior Cytoplasmic Proteins, Earl Weidner and Robin Overstreet
Short-Term Exposure to Thermophilic Temperatures Facilitates CO Uptake by Thermophiles Maintained under Predominantly Mesophilic Conditions, Caitlin K. Wilson and Gary M. King
Phylogenomic analysis of the bowfin (Amia calva) reveals unrecognized species diversity in a living fossil lineage, Jeremy J. Wright, Spencer A. Bruce, Daniel A. Sinopoli, Jay R. Palumbo, and Donald J. Stewart
Multiple Domains of Staphylococcal Superantigen-like Protein 11 (SSL11) Contribute to Neutrophil Inhibition, Chen Yang, Joseph T. Barbieri, Nancy M. Dahms, and Chen Chen
Notch signaling pathway: a comprehensive prognostic and gene expression profile analysis in breast cancer, Hassan Yousefi, Afshin Bahramy, Narges Zafari, Mahsa Rostamian Delavar, Khoa Nguyen, Atousa Haghi, Tahmineh Kandelouei, and Cecilia Vittori
Hippo signaling pathway: A comprehensive gene expression profile analysis in breast cancer, Hassan Yousefi, Mahsa Rostamian Delavar, Fatemeh Piroozian, Masoud Baghi, Khoa Nguyen, Thomas Cheng, Cecilia Vittori, and David Worthylake
Meta-analysis of salt marsh vegetation impacts and recovery: a synthesis following the Deepwater Horizon oil spill, Scott Zengel, Jennifer Weaver, Irving A. Mendelssohn, Sean A. Graham, Qianxin Lin, Mark W. Hester, Jonathan M. Willis, and Brian R. Silliman
Automated landmarking via multiple templates, Chi Zhang, Arthur Porto, Sara Rolfe, Altan Kocatulum, and A Murat Maga
Exploring Conflicts in Whole Genome Phylogenetics: A Case Study within Manakins (Aves: Pipridae), Min Zhao, Sarah M. Kurtis, Noor D. White, Andre E. Moncrieff, Rafael N. Leite, Robb T. Brumfield, Edward L. Braun, and Rebecca T. Kimball
Impacts of global change on the phyllosphere microbiome, Yong-Guan Zhu, Chao Xiong, Zhong Wei, Qing-Lin Chen, Bin Ma, Shu-Yi-Dan Zhou, Jiaqi Tan, and Li-Mei Zhang
Submissions from 2021
Prospects for beyond the Standard Model physics searches at the Deep Underground Neutrino Experiment: DUNE Collaboration, B Abi, R Acciarri, M A. Acero, G Adamov, D Adams, M Adinolfi, Z Ahmad, and J Ahmed
An Ethanolic Extract of Artemisia dracunculus L. Enhances the Metabolic Benefits of Exercise in Diet-induced Obese Mice, Timothy D. Allerton, Greg M. Kowalski, James Stampley, Brian A. Irving, John R. Lighton, Z Elizabeth Floyd, and Jacqueline M. Stephens
Exercise reduced the formation of new adipocytes in the adipose tissue of mice in vivo, Timothy D. Allerton, Jonathan J. Savoie, Mark D. Fitch, Marc K. Hellerstein, Jacqueline M. Stephens, and Ursula White
Transgenic expression of late embryogenesis abundant proteins improves tolerance to water stress in, John M. Anderson and Steven C. Hand
Limited plasticity in thermally tolerant ectotherm populations: evidence for a trade-off, Jordanna M. Barley, Brian S. Cheng, Matthew Sasaki, Sarah Gignoux-Wolfsohn, Cynthia G. Hays, Alysha B. Putnam, Seema Sheth, Andrew R. Villeneuve, and Morgan Kelly
Climate drivers of adult insect activity are conditioned by life history traits, Michael W. Belitz, Vijay Barve, Joshua R. Doby, Maggie M. Hantak, Elise A. Larsen, Daijiang Li, Jessica A. Oswald, Neeka Sewnath, Mitchell Walters, Narayani Barve, et al.
Gut-brain communication and obesity: understanding functions of the vagus nerve, Hans-Rudolf Berthoud, Vance L. Albaugh, and Winfried L. Neuhuber
Optimized Methodology for Reference Region and Image-Derived Input Function Kinetic Modeling in Preclinical PET, Jason Bini, Christine R. Lattin, Takuya Toyonaga, Sjoerd J. Finnema, and Richard E. Carson
and Metabolic Health: Untapped Potential of an Ancient Remedy for Modern Use, Anik Boudreau, Allison J. Richard, Innocence Harvey, and Jacqueline M. Stephens
Phylogenomic Analyses Reveal Non-Monophyly Of The Antbird Genera Herpsilochmus And Sakesphorus (Thamnophilidae), With Description Of A New Genus For Herpsilochmus Sellowi, G A. Bravo, B M. Whitney, R Belmonte-Lopes, M R. Bornschein, G A. Bravo, R Beco, J Battilana, L N. Naka, A Aleixo, M R. Pie, et al.
Analyzing a phenological anomaly in Yucca of the southwestern United States, Laura Brenskelle, Vijay Barve, Lucas C. Majure, Rob P. Guralnick, and Daijiang Li
A Role for Adipocytes and Adipose Stem Cells in the Breast Tumor Microenvironment and Regenerative Medicine, Courtney K. Brock, Katherine L. Hebert, Maria Artiles, Maryl K. Wright, Thomas Cheng, Gabrielle O. Windsor, Khoa Nguyen, and Madlin S. Alzoubi
Multiple Species And Deep Genomic Divergences Despite Little Phenotypic Differentiation In An Ancient Neotropical Songbird, Tunchiornis Ochraceiceps (Sclater, 1860) (Aves: Vireonidae), N Buainain, M F. Maximiano, M Ferreira, A Aleixo, N Buainain, R T. Brumfield, J Cracraft, and C C. Ribas
The critical importance of vouchers in genomics, Janet C. Buckner, Robert C. Sanders, Brant C. Faircloth, and Prosanta Chakrabarty
The critical importance of vouchers in genomics, Janet C. Buckner, Robert C. Sanders, Brant C. Faircloth, and Prosanta Chakrabarty
Genome assemblies for two Neotropical trees: Jacaranda copaia and Handroanthus guayacan, John T. Burley, James R. Kellner, Stephen P. Hubbell, Brant C. Faircloth, and R K. Dawe
KAT8, lysine acetyltransferase 8, is required for adipocyte differentiation in vitro, Jasmine A. Burrell and Jacqueline M. Stephens
Noise during mouthbrooding impairs maternal care behaviors and juvenile development and alters brain transcriptomes in the African cichlid fish Astatotilapia burtoni, Julie M. Butler and Karen P. Maruska
Opsin Expression Varies with Reproductive State in the Cichlid Fish Astatotilapia burtoni, Julie M. Butler and Karen P. Maruska
Organelle-Specific Autophagy in Cellular Aging and Rejuvenation, Tyler J. Butsch, Bhaswati Ghosh, and K Adam Bohnert
Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae), Liming Cai, Brian J. Arnold, Zhenxiang Xi, Danielle E. Khost, Niki Patel, Claire B. Hartmann, Sugumaran Manickam, and Sawitree Sasirat
Reduced turnaround times through multi-sectoral community collaboration during the first surge of SARS-CoV-2 and associated effect on patient care and hospital operations, Rebecca C. Christofferson, Hollis R. O'Neal, Tonya Jagneaux, Catherine O'Neal, Christine S. Walsh, E Handly Mayton, Luan D. Vu, and Abigail I. Fish
Isoform-specific roles of the Drosophila filamin-type protein Jitterbug (Jbug) during development, SeYeon Chung, Thao Phuong Le, Vishakha Vishwakarma, Yim Ling Cheng, and Deborah J. Andrew
Dissecting molecular details and functional effects of the high-affinity copper binding site in plasminogen activator Inhibitor-1, Yuzhuo Chu, Joel C. Bucci, and Cynthia B. Peterson
Pancreatic, but not myeloid-cell, expression of interleukin-1alpha is required for maintenance of insulin secretion and whole body glucose homeostasis, J Jason Collier, Heidi M. Batdorf, Thomas M. Martin, Kristen E. Rohli, David H. Burk, Danhong Lu, Chris R. Cooley, and Michael D. Karlstad
Bats And Humans During Thesars-Cov-2Outbreak: The Case Of Bat-Coronaviruses From Mexico, P Colunga-Salas and G Hernandez-Canchola
to Explore Nucleolar Stress, Kathryn R. DeLeo, Sonu S. Baral, Alex Houser, Allison James, Phelan Sewell, Shova Pandey, and Patrick J. DiMario
Anaerobic carbon monoxide uptake by microbial communities in volcanic deposits at different stages of successional development on o‐yama volcano, Miyake‐jima, Japan, Amber N. Depoy, Gary M. King, and Hiroyuki Ohta
Degradative Tubular Lysosomes Link Pexophagy To Starvation And Early Aging In C. Elegans, D A. Dolese, M P. Junot, B Ghosh, T J. Butsch, D A. Dolese, and K A. Bohnert
A reporting format for leaf-level gas exchange data and metadata, Kim S. Ely, Alistair Rogers, Deborah A. Agarwal, Elizabeth A. Ainsworth, Loren P. Albert, Ashehad Ali, Jeremiah Anderson, Michael J. Aspinwall, Chandra Bellasio, Carl Bernacchi, et al.
A Role for Exercise to Counter Skeletal Muscle Clock Disruption, Melissa L. Erickson, Karyn A. Esser, William E. Kraus, Thomas W. Buford, and Leanne M. Redman
Maternal metabolic health drives mesenchymal stem cell metabolism and infant fat mass at birth, Melissa L. Erickson, Zachary W. Patinkin, Allison M. Duensing, Dana Dabelea, Leanne M. Redman, and Kristen E. Boyle
Positive Selection and Heat-Response Transcriptomes Reveal Adaptive Features of the Brassicaceae Desert Model, Anastatica hierochuntica, Gil Eshel, Nick Duppen, Guannan Wang, Dong-Ha Oh, Yana Kazachkova, Pawel Herzyk, Anna Amtmann, Michal Gordon, Vered Chalifa-Caspi, Michelle Arland Oscar, et al.
Surf and turf vision: Patterns and predictors of visual acuity in compound eye evolution, Kathryn D. Feller, Camilla R. Sharkey, Alyssa McDuffee-Altekruse, Heather D. Bracken-Grissom, Nathan P. Lord, Megan L. Porter, and Lorian E. Schweikert
H3K4 trimethylation dynamics impact diverse developmental and environmental responses in plants, Maryam Foroozani, Matthew P. Vandal, and Aaron P. Smith
More-curated Data Outperforms More Data: Treatment of Cryptic and Known Paralogs Improves Phylogenomic Analysis and Resolves a Northern Andean Origin of Freziera (Pentaphylacaceae), Laura Frost and Laura Lagomarsino
A supergene underlies linked variation in color and morphology in a Holarctic songbird, Erik R. Funk, Nicholas A. Mason, Snæbjörn Pálsson, Tomáš Albrecht, Jeff A. Johnson, and Scott A. Taylor
, sp. nov., is an emerging root-associated pathogen responsible for taproot decline of soybean in the southern United States, Teddy Garcia-Aroca, Paul P. Price, Maria Tomaso-Peterson, Tom W. Allen, Tessie H. Wilkerson, Terry N. Spurlock, Travis R. Faske, and Burt Bluhm
Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability, Marit E. Geijer, Di Zhou, Kathiresan Selvam, Barbara Steurer, Chirantani Mukherjee, Bastiaan Evers, Simona Cugusi, and Marvin van Toorn
Publisher Correction: Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability, Marit E. Geijer, Di Zhou, Kathiresan Selvam, Barbara Steurer, Chirantani Mukherjee, Bastiaan Evers, Simona Cugusi, and Marvin van Toorn
Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous, Ava Ghezelayagh, Richard C. Harrington, Edward D. Burress, Matthew A. Campbell, Janet C. Buckner, Prosanta Chakrabarty, Jessica R. Glass, W. Tyler McCraney, Peter J. Unmack, Christine E. Thacker, et al.
PEG3 controls lipogenesis through ACLY, Subash Ghimire, Juan J. Loor, and Joomyeong Kim
Maternal cold exposure induces distinct transcriptome changes in the placenta and fetal brown adipose tissue in mice, Sujoy Ghosh, Chul-Hong Park, Jisu Lee, Nathan Lee, Rui Zhang, Clara Huesing, Dorien Reijnders, and Jennifer Sones